TAfinder detailed results

Overview

Job ID 9mizKMmBqU
Sequence name Escherichia coli strain DH5alpha chromosome, complete genome.
Predicted type I

Orphan Toxin (Protein)


Predicted family hokA (T10208) Predicted domain -
Locus tag C1467_RS00955 Length 49 a.a.
Coordinates 184373..184522 (+)

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
C1467_RS00915 179611..180522 + 912 WP_001168544.1 glycine--tRNA ligase subunit alpha -
C1467_RS00920 180532..182601 + 2070 WP_001291771.1 glycine--tRNA ligase subunit beta -
C1467_RS00925 182902..184271 + 1368 WP_085947770.1 IS3-like element IS150 family transposase -
C1467_RS00930 184373..184522 + 150 Protein_171 type I toxin-antitoxin system toxin HokA Toxin
C1467_RS00935 184713..184925 - 213 WP_000014594.1 RNA chaperone/antiterminator CspA -
C1467_RS00940 185206..185496 - 291 WP_000455798.1 HTH-type transcriptional regulator -
C1467_RS00945 185930..186640 + 711 WP_000190517.1 DUF3053 domain-containing protein -
C1467_RS00950 186690..187664 - 975 WP_000805027.1 glyoxylate/hydroxypyruvate reductase GhrB -
C1467_RS00955 187768..188427 - 660 WP_000747625.1 OmpA family lipoprotein -

Domains

The domains were predicted by HMMER and were sorted by score.

Orphan Toxin


No domain identified.



Sequences

Orphan Toxin        


Download         Length:         Molecular weight: 5912.14 Da        Isoelectric Point: 7.7173

>Protein_171 Orphan_TA_3 Toxin
MPQKYRLLSLIVICFTLLFFTWMIRDSLCELHIKQGSYELAAFLACNLKE

Download         Length: 150 bp

>Protein_171 Orphan_TA_3 Toxin
ATGCCGCAGAAATATAGATTACTTTCTTTAATAGTGATTTGTTTCACGCTTTTATTTTTC
ACCTGGATGATAAGAGATTCACTGTGTGAATTGCATATTAAACAGGGGAGTTATGAGCTG
GCGGCATTTTTAGCCTGCAATTTAAAAGAG

Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
T10208 Escherichia coli C

100

100

1
T10210 Hafnia alvei

68.182

84.615

0.6
T6370 Escherichia coli

54

100

0.54
T6324 Escherichia coli

40

86.538

0.36
T6363 uncultured bacterium

40

86.538

0.36
T10039 Escherichia coli O157:H7 str. Sakai

42.857

82.353

0.36
T10209 Escherichia coli strain ECOR24

41.86

86

0.36
T6369 Escherichia coli K-12

40.476

85.714

0.34
T10124 Erwinia amylovora ATCC 49946

53.846

81.25

0.28