TAfinder detailed results

Overview

Job ID 9mizKMmBqU
Sequence name Escherichia coli strain DH5alpha chromosome, complete genome.
Predicted type II

Toxin (Protein)


Predicted family - Predicted domain GnsAB_toxin (GnsA)
Locus tag C1467_RS15435 Length 57 a.a.
Coordinates 2942381..2942554 (-)

Antitoxin (Protein)


Predicted family - Predicted domain YmcE_antitoxin (YmcE)
Locus tag C1467_RS15440 Length 76 a.a.
Coordinates 2942544..2942774 (-)

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
C1467_RS15425 2938444..2941188 + 2745 WP_015695619.1 TMAO reductase system sensor histidine kinase/response regulator TorS -
C1467_RS15430 2941260..2942333 + 1074 WP_000829669.1 4Fe-4S binding protein -
C1467_RS15435 2942381..2942554 - 174 WP_001019197.1 addiction module toxin, GnsA/GnsB family Toxin
C1467_RS15440 2942544..2942774 - 231 WP_001331090.1 protein YmcE Antitoxin
C1467_RS15445 2942749..2942937 - 189 WP_071524879.1 cold-shock protein -
C1467_RS15450 2942948..2943160 - 213 WP_000066490.1 cold shock protein CspG -
C1467_RS15455 2943446..2943658 + 213 WP_000087763.1 cold shock-like protein CspH -
C1467_RS15460 2944101..2944406 + 306 WP_001295358.1 threonine-rich inner membrane protein GfcA -
C1467_RS15465 2944513..2945157 + 645 WP_001247610.1 lipoprotein GfcB -
C1467_RS15470 2945154..2945900 + 747 WP_001038062.1 capsule biosynthesis GfcC family protein -

Domains

The domains were predicted by HMMER and were sorted by score.

Toxin

GnsAB_toxin (GnsA) (E-value: 1.3e-35, Score:119.2)

(2-54)

Antitoxin

YmcE_antitoxin (YmcE) (E-value: 9.8e-56, Score:184)

(1-76)


Sequences

Toxin        


Download         Length: 57 a.a.        Molecular weight: 6543.55 Da        Isoelectric Point: 5.0824

>WP_001019197.1 TA_26 Toxin
VNIEELKKQAETEIADFIAQKIAELNKNTGKEVSEIRFTAREKMTGLESYDVKIKIM*

Download         Length: 174 bp

>WP_001019197.1 TA_26 Toxin
TCACATTATTTTGATTTTGACATCATAACTTTCAAGCCCGGTCATTTTTTCTCGTGCGGT
GAAGCGAATTTCAGAGACTTCTTTCCCTGTATTCTTGTTCAGCTCGGCGATTTTTTGCGC
GATAAAGTCGGCGATTTCCGTTTCGGCTTGTTTTTTTAACTCTTCAATATTCAC

Antitoxin


Download         Length: 76 a.a.        Molecular weight: 8673.08 Da        Isoelectric Point: 6.1174

>WP_001331090.1 TA_26 Antitoxin
MRRWISQNNIRLPRGAFFISALFFFNAVCIVSDNLLIIESFGEMAYNISYLTKVPGTNTL
LACCCLSRPEEVNSEY*

Download         Length: 231 bp

>WP_001331090.1 TA_26 Antitoxin
TCAATATTCACTGTTAACCTCTTCTGGTCTTGAAAGACAGCAACACGCCAGTAAGGTGTT
GGTTCCCGGTACCTTGGTCAGGTAAGAAATGTTATAAGCCATCTCCCCGAAAGATTCAAT
AATCAACAGGTTATCGCTTACTATACATACAGCGTTGAAGAAAAATAAGGCAGATATAAA
AAAGGCTCCACGAGGGAGCCTGATATTATTTTGTGAAATCCAGCGGCGCAT

Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value