TAfinder detailed results

Overview

Job ID 9mizKMmBqU
Sequence name Escherichia coli strain DH5alpha chromosome, complete genome.
Predicted type I

Toxin (Protein)


Predicted family ldrD (T6326) Predicted domain Ldr_toxin (Ldr)
Locus tag C1467_RS14280 Length 35 a.a.
Coordinates 2737752..2737859 (+)

Antitoxin (RNA)


Predicted family rdlD (AT6347) Predicted domain -
Locus tag NuclAT_17 Length 68 bp
Coordinates 2737637..2737704 (-)

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
C1467_RS14250 2732919..2734313 - 1395 WP_000086213.1 inverse autotransporter invasin YchO -
C1467_RS14255 2734498..2734851 + 354 WP_001169671.1 DsrE/F sulfur relay family protein YchN -
C1467_RS14260 2734895..2735589 - 693 Protein_2637 glutathione-specific gamma-glutamylcyclotransferase -
C1467_RS14265 2735747..2735977 - 231 WP_001146444.1 putative cation transport regulator ChaB -
C1467_RS14270 2736247..2737347 + 1101 WP_001295620.1 sodium-potassium/proton antiporter ChaA -
- 2737637..2737704 - 207 - - Antitoxin
C1467_RS14280 2737752..2737859 + 108 WP_000170965.1 type I toxin-antitoxin system toxin Ldr family protein Toxin
C1467_RS14285 2738288..2738395 + 108 WP_000170926.1 type I toxin-antitoxin system toxin Ldr family protein -
C1467_RS25050 2738823..2738930 + 108 WP_000170954.1 type I toxin-antitoxin system toxin Ldr family protein -
C1467_RS14295 2739079..2739933 - 855 WP_000811065.1 3-deoxy-8-phosphooctulonate synthase -
C1467_RS14300 2739969..2740778 - 810 WP_001257044.1 invasion regulator SirB1 -
C1467_RS14305 2740782..2741174 - 393 WP_000200378.1 invasion regulator SirB2 -
C1467_RS14310 2741171..2742004 - 834 WP_000456571.1 peptide chain release factor N(5)-glutamine methyltransferase -

Domains

The domains were predicted by HMMER and were sorted by score.

Toxin

Ldr_toxin (Ldr) (E-value: 2.3e-26, Score:89.6)

(1-35)


Sequences

Toxin        


Download         Length: 35 a.a.        Molecular weight: 4001.77 Da        Isoelectric Point: 11.4779

>WP_000170965.1 TA_23 Toxin
MTLAQFAMTFWHDLAAPILAGIITAAIVSWWRNRK*

Download         Length: 108 bp

>WP_000170965.1 TA_23 Toxin
ATGACGCTCGCGCAGTTTGCCATGACTTTCTGGCACGACCTGGCAGCACCGATCCTGGCG
GGGATTATTACCGCAGCGATTGTCAGCTGGTGGCGTAACCGGAAGTAA

Antitoxin


Download         Length: 68 bp

>NuclAT_17 TA_23 Antitoxin
AGAGAAAACCCCCGCACGTTGAGAGGTAAAACCTGACAACAAAACGGGGGCTAATCTTGA
AACCAGAC

Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
T6326 Escherichia coli str. K-12 substr. MC4100

97.143

100

0.944
T6346 Escherichia coli K-12 strain ER3413

97.143

100

0.944
T6338 Escherichia coli str. K-12 substr. MDS42

97.143

100

0.944
T6334 Escherichia coli str. K-12 substr. DH10B

97.143

100

0.944
T6342 Escherichia coli str. K-12 substr. W3110

97.143

100

0.944
T6330 Escherichia coli str. K-12 substr. MG1655

97.143

100

0.944
T6327 Escherichia coli str. K-12 substr. MC4100

97.143

100

0.944
T6325 Escherichia coli str. K-12 substr. MC4100

97.143

100

0.944
T6347 Escherichia coli K-12 strain ER3413

97.143

100

0.944
T6345 Escherichia coli K-12 strain ER3413

97.143

100

0.944
T6339 Escherichia coli str. K-12 substr. MDS42

97.143

100

0.944
T6337 Escherichia coli str. K-12 substr. MDS42

97.143

100

0.944
T6335 Escherichia coli str. K-12 substr. DH10B

97.143

100

0.944
T6333 Escherichia coli str. K-12 substr. DH10B

97.143

100

0.944
T6343 Escherichia coli str. K-12 substr. W3110

97.143

100

0.944
T6341 Escherichia coli str. K-12 substr. W3110

97.143

100

0.944
T6331 Escherichia coli str. K-12 substr. MG1655

97.143

100

0.944
T6329 Escherichia coli str. K-12 substr. MG1655

97.143

100

0.944
T6328 Escherichia coli str. K-12 substr. MC4100

57.143

100

0.556
T6348 Escherichia coli K-12 strain ER3413

57.143

100

0.556
T6340 Escherichia coli str. K-12 substr. MDS42

57.143

100

0.556
T6336 Escherichia coli str. K-12 substr. DH10B

57.143

100

0.556
T6344 Escherichia coli str. K-12 substr. W3110

57.143

100

0.556
T6332 Escherichia coli str. K-12 substr. MG1655

57.143

100

0.556
Protein Organism Identities (%) Coverage (%) Ha-value