TAfinder detailed results

Overview

Job ID 9mizKMmBqU
Sequence name Escherichia coli strain DH5alpha chromosome, complete genome.
Predicted type I

Toxin (Protein)


Predicted family ralR (T6362) Predicted domain -
Locus tag C1467_RS13545 Length 64 a.a.
Coordinates 2596555..2596749 (+)

Antitoxin (RNA)


Predicted family ralA (AT10218) Predicted domain -
Locus tag NuclAT_1 Length 179 bp
Coordinates 2596748..2596926 (-)

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
C1467_RS13515 2591680..2591832 + 153 WP_001169153.1 DUF1391 family protein -
C1467_RS13520 2592253..2592474 + 222 WP_000560220.1 killing protein KilR -
C1467_RS13525 2592474..2592644 + 171 WP_001349883.1 YdaE family protein -
C1467_RS13530 2592719..2592994 + 276 WP_001349884.1 hypothetical protein -
C1467_RS13535 2593096..2595696 + 2601 WP_000105152.1 exodeoxyribonuclease VIII -
C1467_RS13540 2595689..2596498 + 810 WP_000166319.1 recombination protein RecT -
C1467_RS13545 2596555..2596749 + 195 WP_001317028.1 type I toxin-antitoxin system endodeoxyribonuclease toxin RalR Toxin
C1467_RS13550 2596742..2596951 + 210 WP_000276809.1 double-strand break reduction protein RcbA -
- 2596748..2596926 - 540 - - Antitoxin
C1467_RS13555 2597030..2597245 + 216 WP_000079604.1 excisionase XisR -
C1467_RS13560 2597247..2598482 + 1236 WP_000040852.1 site-specific integrase -
C1467_RS13565 2598534..2599469 + 936 WP_001157422.1 tRNA 2-thiocytidine(32) synthetase TtcA -
C1467_RS13570 2599598..2600971 - 1374 WP_000123740.1 ATP-dependent RNA helicase DbpA -
C1467_RS25570 2601001..2601174 - 174 WP_001296046.1 protein YnaL -

Domains

The domains were predicted by HMMER and were sorted by score.

Toxin


No domain identified.



Sequences

Toxin        


Download         Length: 64 a.a.        Molecular weight: 7018.89 Da        Isoelectric Point: 8.9538

>WP_001317028.1 TA_21 Toxin
MRYDNVKPCPFCGCPSVTVKAISGYYRAKCNGCESRTGYGGSEKEALERWNKRTTGNNNG
GVHV*

Download         Length: 195 bp

>WP_001317028.1 TA_21 Toxin
ATGAGATATGACAATGTTAAACCATGTCCATTTTGTGGTTGTCCATCAGTAACGGTGAAA
GCCATTTCAGGGTATTACCGAGCGAAGTGTAACGGATGCGAATCCCGAACCGGTTATGGT
GGAAGTGAAAAAGAAGCACTCGAAAGATGGAATAAACGAACCACTGGAAATAATAATGGA
GGTGTTCATGTATAA

Antitoxin


Download         Length: 179 bp

>NuclAT_1 TA_21 Antitoxin
AAAATTACCGCCACTATTGAAAAGGAAGGTGGCACTCCTACTAACTGGACAAGATATTCA
AAATCTAAACTAACGAAATCAGAATGCGAAAAAATGCTCTCAGGTAAAAAAGAAGCAGGC
GTTTCCAGAGAGCAGAAAGTAAAATTGATAAATTTTAATTGCGAGAAACTTCAGTCCTC

Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
T6362 Escherichia coli str. K-12 substr. MG1655

100

100

0.985
T10218 Escherichia coli O157:H7 str. EDL933

100

100

0.754
Protein Organism Identities (%) Coverage (%) Ha-value