TAfinder detailed results
Overview
| Job ID | 9mizKMmBqU | ||
| Sequence name | Escherichia coli strain DH5alpha chromosome, complete genome. | ||
| Predicted type | II | ||
Orphan Antitoxin (Protein)
| Predicted family | NpoA (AT10134) | Predicted domain | - |
| Locus tag | C1467_RS04910 | Length | 253 a.a. |
| Coordinates | 926022..926783 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| C1467_RS04870 | 921112..921744 | - | 633 | WP_001305805.1 | helix-turn-helix transcriptional regulator | - |
| C1467_RS04875 | 922204..923433 | - | 1230 | WP_000065950.1 | amino acid permease | - |
| C1467_RS04880 | 923688..924869 | + | 1182 | WP_000656029.1 | acetyl-CoA C-acetyltransferase | - |
| C1467_RS04885 | 925156..925992 | + | 837 | WP_000383222.1 | 5-dehydro-4-deoxy-D-glucuronate isomerase | - |
| C1467_RS04890 | 926022..926783 | + | 762 | WP_000603517.1 | 2-dehydro-3-deoxy-D-gluconate 5-dehydrogenase KduD | Antitoxin |
| C1467_RS04895 | 927098..928516 | + | 1419 | WP_000256438.1 | arabinose-proton symporter AraE | - |
| C1467_RS04900 | 928645..929337 | + | 693 | WP_000848664.1 | amino acid racemase | - |
| C1467_RS04905 | 929324..930259 | - | 936 | WP_000741827.1 | DNA-binding transcriptional regulator LysR | - |
| C1467_RS04910 | 930381..931643 | + | 1263 | WP_001120711.1 | diaminopimelate decarboxylase | - |
Domains
The domains were predicted by HMMER and were sorted by score.
Orphan Antitoxin
No domain identified.
Sequences
Orphan Antitoxin
Download Length: Molecular weight: 27069.08 Da Isoelectric Point: 5.7295
>WP_000603517.1 Orphan_TA_19 Antitoxin
MILSAFSLEGKVAVVTGCDTGLGQGMALGLAQAGCDIVGINIVEPTETIKQVTALGRRFL
SLTADLRKIDGIPALLDRAVAEFGHIDILVNNAGLIRREDALEFSEKDWDDVMNLNIKSV
FFMSQAAAKHFIAQGNGGKIINIASMLSFQGGIRVPSYTASKSGVMGVTRLMANEWAKHN
INVNAIAPGYMATNNTQQLRADEQRSAEILDRIPAGRWGLPSDLMGPIVFLASSASDYVN
GYTIAVDGGWLAR*
MILSAFSLEGKVAVVTGCDTGLGQGMALGLAQAGCDIVGINIVEPTETIKQVTALGRRFL
SLTADLRKIDGIPALLDRAVAEFGHIDILVNNAGLIRREDALEFSEKDWDDVMNLNIKSV
FFMSQAAAKHFIAQGNGGKIINIASMLSFQGGIRVPSYTASKSGVMGVTRLMANEWAKHN
INVNAIAPGYMATNNTQQLRADEQRSAEILDRIPAGRWGLPSDLMGPIVFLASSASDYVN
GYTIAVDGGWLAR*
Download Length: 762 bp
>WP_000603517.1 Orphan_TA_19 Antitoxin
ATGATTTTAAGTGCATTTTCTCTCGAAGGTAAAGTTGCGGTCGTCACTGGTTGTGATACT
GGACTGGGCCAGGGGATGGCGTTGGGGCTGGCGCAAGCGGGCTGTGACATTGTTGGCATT
AACATCGTTGAACCGACTGAAACCATCAAGCAGGTCACAGCGCTGGGGCGTCGTTTTTTA
AGCCTGACCGCCGATCTGCGAAAGATTGATGGTATTCCAGCACTGCTGGATCGCGCGGTA
GCGGAGTTTGGTCATATTGATATCCTGGTGAATAACGCCGGATTGATTCGCCGCGAAGAC
GCTCTCGAGTTCAGCGAAAAGGACTGGGACGATGTCATGAACCTGAATATCAAGAGCGTA
TTCTTCATGTCTCAGGCAGCGGCGAAACACTTTATCGCGCAAGGCAATGGCGGCAAGATT
ATCAATATCGCGTCAATGCTCTCCTTCCAGGGCGGGATCCGTGTGCCTTCTTATACCGCA
TCAAAAAGCGGTGTGATGGGCGTGACGCGATTGATGGCGAACGAATGGGCTAAACACAAC
ATTAATGTTAATGCGATAGCTCCGGGTTACATGGCGACCAACAATACTCAACAACTGCGG
GCAGATGAACAACGTAGCGCGGAAATTCTCGACCGCATTCCAGCTGGCCGTTGGGGACTG
CCGAGTGACCTGATGGGGCCGATAGTGTTCCTTGCCTCCAGCGCTTCAGATTATGTGAAT
GGTTATACCATTGCCGTGGATGGCGGTTGGCTGGCGCGTTAA
ATGATTTTAAGTGCATTTTCTCTCGAAGGTAAAGTTGCGGTCGTCACTGGTTGTGATACT
GGACTGGGCCAGGGGATGGCGTTGGGGCTGGCGCAAGCGGGCTGTGACATTGTTGGCATT
AACATCGTTGAACCGACTGAAACCATCAAGCAGGTCACAGCGCTGGGGCGTCGTTTTTTA
AGCCTGACCGCCGATCTGCGAAAGATTGATGGTATTCCAGCACTGCTGGATCGCGCGGTA
GCGGAGTTTGGTCATATTGATATCCTGGTGAATAACGCCGGATTGATTCGCCGCGAAGAC
GCTCTCGAGTTCAGCGAAAAGGACTGGGACGATGTCATGAACCTGAATATCAAGAGCGTA
TTCTTCATGTCTCAGGCAGCGGCGAAACACTTTATCGCGCAAGGCAATGGCGGCAAGATT
ATCAATATCGCGTCAATGCTCTCCTTCCAGGGCGGGATCCGTGTGCCTTCTTATACCGCA
TCAAAAAGCGGTGTGATGGGCGTGACGCGATTGATGGCGAACGAATGGGCTAAACACAAC
ATTAATGTTAATGCGATAGCTCCGGGTTACATGGCGACCAACAATACTCAACAACTGCGG
GCAGATGAACAACGTAGCGCGGAAATTCTCGACCGCATTCCAGCTGGCCGTTGGGGACTG
CCGAGTGACCTGATGGGGCCGATAGTGTTCCTTGCCTCCAGCGCTTCAGATTATGTGAAT
GGTTATACCATTGCCGTGGATGGCGGTTGGCTGGCGCGTTAA
Similar Proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| AT10134 | Acetobacter pasteurianus strain Ab3 |
32.114 |
86.62 |
0.311 |