TAfinder detailed results
Overview
| Job ID | 9mizKMmBqU | ||
| Sequence name | Escherichia coli strain DH5alpha chromosome, complete genome. | ||
| Predicted type | II | ||
Orphan Antitoxin (Protein)
| Predicted family | NpoA (AT10134) | Predicted domain | - |
| Locus tag | C1467_RS03935 | Length | 294 a.a. |
| Coordinates | 740619..741503 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| C1467_RS03875 | 736005..736904 | + | 900 | WP_000817717.1 | DNA-binding transcriptional regulator YqhC | - |
| C1467_RS03880 | 736944..737603 | - | 660 | WP_000268419.1 | DedA family general envelope maintenance protein YghB | - |
| C1467_RS03885 | 737743..738930 | - | 1188 | WP_000763933.1 | cystathionine beta-lyase | - |
| C1467_RS03895 | 739181..739915 | + | 735 | WP_000527844.1 | tol-pal system-associated acyl-CoA thioesterase | - |
| C1467_RS03900 | 739922..740347 | + | 426 | WP_001240712.1 | TonB system transport protein ExbD | - |
| C1467_RS03905 | 740619..741503 | - | 885 | WP_000018760.1 | NADP(+)-dependent aldehyde reductase | Antitoxin |
| C1467_RS03910 | 741694..742188 | + | 495 | WP_000439331.1 | TIGR00645 family protein | - |
| C1467_RS03915 | 742228..743268 | - | 1041 | WP_000262156.1 | L-glyceraldehyde 3-phosphate reductase | - |
| C1467_RS03920 | 743425..744312 | + | 888 | WP_001349899.1 | YghX family hydrolase | - |
| C1467_RS03925 | 744431..744718 | + | 288 | WP_001059136.1 | DUF2623 family protein YghW | - |
| C1467_RS03935 | 744907..746025 | + | 1119 | WP_000145410.1 | hydrogenase 2 small subunit | - |
Domains
The domains were predicted by HMMER and were sorted by score.
Orphan Antitoxin
No domain identified.
Sequences
Orphan Antitoxin
Download Length: Molecular weight: 31487.97 Da Isoelectric Point: 6.7520
>WP_000018760.1 Orphan_TA_17 Antitoxin
MSHLKDPTTQYYTGEYPKQKQPTPGIQAKMTPVPDCGEKTYVGSGRLKDRKALVTGGDSG
IGRAAAIAYAREGADVAISYLPVEEEDAQDVKKIIEECGRKAVLLPGDLSDEKFARSLVH
EAHKALGGLDIMALVAGKQVAIPDIADLTSEQFQKTFAINVFALFWLTQEAIPLLPKGAS
IITTSSIQAYQPSPHLLDYAATKAAILNYSRGLAKQVAEKGIRVNIVAPGPIWTALQISG
GQTQDKIPQFGQQTPMKRAGQPAELAPVYVYLASQESSYVTAEVHGVCGGEHLG*
MSHLKDPTTQYYTGEYPKQKQPTPGIQAKMTPVPDCGEKTYVGSGRLKDRKALVTGGDSG
IGRAAAIAYAREGADVAISYLPVEEEDAQDVKKIIEECGRKAVLLPGDLSDEKFARSLVH
EAHKALGGLDIMALVAGKQVAIPDIADLTSEQFQKTFAINVFALFWLTQEAIPLLPKGAS
IITTSSIQAYQPSPHLLDYAATKAAILNYSRGLAKQVAEKGIRVNIVAPGPIWTALQISG
GQTQDKIPQFGQQTPMKRAGQPAELAPVYVYLASQESSYVTAEVHGVCGGEHLG*
Download Length: 885 bp
>WP_000018760.1 Orphan_TA_17 Antitoxin
TTAACCTAAATGCTCGCCGCCGCACACACCGTGCACTTCTGCGGTGACGTAGCTCGACTC
CTGACTTGCCAGATAAACATATACAGGGGCCAGTTCCGCCGGTTGCCCCGCACGCTTCAT
CGGCGTTTGCTGACCAAACTGCGGGATCTTATCCTGCGTTTGTCCGCCGGAAATTTGCAG
TGCTGTCCAGATCGGGCCTGGCGCGACAATATTCACCCGAATACCTTTCTCCGCGACCTG
TTTTGCCAGGCCACGGCTGTAGTTCAGAATCGCCGCCTTCGTAGCCGCATAGTCCAGTAA
ATGCGGACTTGGCTGGTATGCCTGGATTGACGAAGTGGTGATGATACTTGCACCTTTCGG
TAGCAGGGGGATCGCTTCCTGGGTTAGCCAGAACAGCGCGAAAACGTTAATGGCAAAGGT
CTTTTGAAACTGTTCGCTGGTGAGGTCTGCAATATCCGGAATGGCAACCTGTTTCCCGGC
GACCAGCGCCATAATATCCAGCCCGCCTAACGCCTTATGCGCTTCGTGAACCAGCGAACG
GGCGAATTTCTCATCGCTTAAATCGCCTGGCAGCAGAACGGCTTTGCGTCCGCATTCTTC
AATGATCTTTTTCACATCCTGAGCGTCTTCTTCTTCCACGGGAAGATAACTGATCGCCAC
GTCAGCCCCTTCACGCGCGTAAGCGATGGCGGCAGCGCGACCTATTCCGGAATCGCCCCC
TGTCACCAGTGCTTTACGATCTTTCAGGCGACCGCTACCAACATAGGTTTTCTCGCCGCA
ATCCGGTACCGGTGTCATCTTCGCCTGGATGCCTGGCGTCGGTTGTTTCTGTTTGGGATA
TTCACCAGTGTAATACTGCGTGGTCGGGTCTTTTAAATGAGACAT
TTAACCTAAATGCTCGCCGCCGCACACACCGTGCACTTCTGCGGTGACGTAGCTCGACTC
CTGACTTGCCAGATAAACATATACAGGGGCCAGTTCCGCCGGTTGCCCCGCACGCTTCAT
CGGCGTTTGCTGACCAAACTGCGGGATCTTATCCTGCGTTTGTCCGCCGGAAATTTGCAG
TGCTGTCCAGATCGGGCCTGGCGCGACAATATTCACCCGAATACCTTTCTCCGCGACCTG
TTTTGCCAGGCCACGGCTGTAGTTCAGAATCGCCGCCTTCGTAGCCGCATAGTCCAGTAA
ATGCGGACTTGGCTGGTATGCCTGGATTGACGAAGTGGTGATGATACTTGCACCTTTCGG
TAGCAGGGGGATCGCTTCCTGGGTTAGCCAGAACAGCGCGAAAACGTTAATGGCAAAGGT
CTTTTGAAACTGTTCGCTGGTGAGGTCTGCAATATCCGGAATGGCAACCTGTTTCCCGGC
GACCAGCGCCATAATATCCAGCCCGCCTAACGCCTTATGCGCTTCGTGAACCAGCGAACG
GGCGAATTTCTCATCGCTTAAATCGCCTGGCAGCAGAACGGCTTTGCGTCCGCATTCTTC
AATGATCTTTTTCACATCCTGAGCGTCTTCTTCTTCCACGGGAAGATAACTGATCGCCAC
GTCAGCCCCTTCACGCGCGTAAGCGATGGCGGCAGCGCGACCTATTCCGGAATCGCCCCC
TGTCACCAGTGCTTTACGATCTTTCAGGCGACCGCTACCAACATAGGTTTTCTCGCCGCA
ATCCGGTACCGGTGTCATCTTCGCCTGGATGCCTGGCGTCGGTTGTTTCTGTTTGGGATA
TTCACCAGTGTAATACTGCGTGGTCGGGTCTTTTAAATGAGACAT
Similar Proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| AT10134 | Acetobacter pasteurianus strain Ab3 |
49.819 |
97.535 |
0.468 |