TAfinder detailed results

Overview

Job ID 9mizKMmBqU
Sequence name Escherichia coli strain DH5alpha chromosome, complete genome.
Predicted type II

Toxin (Protein)


Predicted family PrpT (T10079) Predicted domain COG3668 (ParE)
Locus tag C1467_RS09280 Length 98 a.a.
Coordinates 1792645..1792941 (-)

Antitoxin (Protein)


Predicted family PrpA (AT10079) Predicted domain TIGR02606 (CC2985)
Locus tag C1467_RS09285 Length 98 a.a.
Coordinates 1792943..1793239 (-)

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
C1467_RS09260 1788967..1789446 + 480 WP_000978889.1 phage tail protein -
C1467_RS09265 1789446..1790609 + 1164 WP_000882938.1 phage late control D family protein -
C1467_RS09270 1790690..1790908 + 219 WP_000468308.1 prophage transcriptional regulator OgrK -
C1467_RS09275 1791181..1792542 - 1362 WP_000476011.1 tRNA 5-hydroxyuridine modification protein YegQ -
C1467_RS09280 1792645..1792941 - 297 WP_001220181.1 type II toxin-antitoxin system RelE/ParE family toxin Toxin
C1467_RS09285 1792943..1793239 - 297 WP_001307279.1 type II toxin-antitoxin system ParD family antitoxin Antitoxin
C1467_RS09290 1793448..1793780 - 333 WP_000929408.1 YegP family protein -
C1467_RS09295 1793971..1794693 - 723 WP_000137869.1 two-component system response regulator BaeR -
C1467_RS09300 1794690..1796093 - 1404 WP_000675150.1 two-component system sensor histidine kinase BaeS -
C1467_RS09305 1796090..1797505 - 1416 WP_000130893.1 MFS transporter -

Domains

The domains were predicted by HMMER and were sorted by score.

Toxin

COG3668 (ParE) (E-value: 3.3e-06, Score:25.6)

(8-99)

Antitoxin

TIGR02606 (CC2985) (E-value: 4.2e-26, Score:89.2)

(2-79)

PF03693 (RHH) (E-value: 5.5e-21, Score:72.8)

(1-76)

COG3609 (ParD) (E-value: 3.5e-09, Score:35.3)

(6-79)


Sequences

Toxin        


Download         Length: 98 a.a.        Molecular weight: 11508.09 Da        Isoelectric Point: 6.2099

>WP_001220181.1 TA_14 Toxin
VRIIKLMPKANEDLEGIWYYSYHHFGEPQADRYVEHLSDVLQILSNNNIGTPRPELGEGI
FVLPFERHVIYFLQSPGEIIVIRILNQNQDATRHLHWS*

Download         Length: 297 bp

>WP_001220181.1 TA_14 Toxin
TTAGCTCCAGTGTAAATGTCTGGTGGCGTCCTGGTTTTGGTTAAGGATACGAATGACGAT
AATTTCCCCTGGTGATTGCAGGAAATAAATGACGTGGCGTTCAAAAGGAAGAACAAAAAT
ACCTTCGCCTAATTCAGGTCTGGGCGTACCTATATTATTGTTACTCAGAATCTGGAGAAC
GTCTGAAAGATGTTCCACATATCTGTCGGCTTGTGGTTCGCCGAAATGGTGATAGCTGTA
ATACCAGATGCCTTCTAAATCCTCATTGGCTTTTGGCATGAGTTTAATAATACGCAC

Antitoxin


Download         Length: 98 a.a.        Molecular weight: 11293.95 Da        Isoelectric Point: 8.5304

>WP_001307279.1 TA_14 Antitoxin
MTYTDVRFLLTGGRKMARTMTVDLGDELREFIESLIESGDYRTQSEVIRESLRLLREKQA
ESRLQALRDMLAEGLSSGEAQPWEKDAFLRKVKAGIRK*

Download         Length: 297 bp

>WP_001307279.1 TA_14 Antitoxin
TTATTTCCTTATCCCTGCTTTCACCTTCCGTAAGAACGCGTCCTTTTCCCACGGCTGAGC
TTCACCACTACTCAACCCTTCTGCGAGCATGTCACGTAACGCTTGCAGGCGAGACTCTGC
TTGCTTTTCTCGAAGTAATCGCAGTGACTCACGGATCACTTCGCTTTGGGTGCGATAGTC
GCCGGATTCAATTAAGGACTCGATAAATTCACGCAACTCATCGCCGAGATCAACCGTCAT
CGTTCTGGCCATTTTACGCCCGCCTGTAAGTAAAAATCTTACATCAGTGTATGTCAT

Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
T10079 Pseudoalteromonas rubra strain SCSIO 6842

34.066

92.857

0.313
T105 Mycobacterium tuberculosis H37Rv

31.522

93.878

0.293
T170 Vibrio cholerae O1 biovar El Tor str. N16961

28.421

90.476

0.273
T164 Vibrio cholerae O1 biovar El Tor str. N16961

28.421

90.476

0.273
T228 Caulobacter crescentus CB15

28.261

95.833

0.263
T169 Vibrio cholerae O1 biovar El Tor str. N16961

32.184

87.879

0.283
T233 Caulobacter crescentus CB15

29.885

78.378

0.263
T6129 Streptococcus mutans

18.627

91.071

0.192
T6128 Streptococcus mutans

18.627

91.071

0.192
Protein Organism Identities (%) Coverage (%) Ha-value
AT10079 Pseudoalteromonas rubra strain SCSIO 6842

61.039

89.535

0.475
AT169 Vibrio cholerae O1 biovar El Tor str. N16961

41.772

98.75

0.333
AT105 Mycobacterium tuberculosis H37Rv

37.975

95.181

0.303
AT228 Caulobacter crescentus CB15

36

85.227

0.273
AT233 Caulobacter crescentus CB15

36.667

72.289

0.222