TAfinder detailed results

Overview

Job ID 9mizKMmBqU
Sequence name Escherichia coli strain DH5alpha chromosome, complete genome.
Predicted type I

Toxin (Protein)


Predicted family hokX (T10211) Predicted domain -
Locus tag C1467_RS05470 Length 50 a.a.
Coordinates 1059075..1059227 (+)

Antitoxin (RNA)


Predicted family sokX (AT10211) Predicted domain -
Locus tag NuclAT_25 Length 55 bp
Coordinates 1058981..1059035 (-)

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
C1467_RS05450 1054491..1056290 + 1800 WP_000211906.1 NADPH-dependent assimilatory sulfite reductase flavoprotein subunit -
C1467_RS05455 1056290..1058002 + 1713 WP_001290706.1 assimilatory sulfite reductase (NADPH) hemoprotein subunit -
C1467_RS05460 1058076..1058810 + 735 WP_000039843.1 phosphoadenosine phosphosulfate reductase -
- 1058981..1059035 - 168 - - Antitoxin
C1467_RS05470 1059075..1059227 + 153 WP_000956460.1 Hok/Gef family protein Toxin
C1467_RS05475 1059422..1062121 + 2700 WP_001233950.1 CRISPR-associated helicase/endonuclease Cas3 -
C1467_RS05480 1062219..1063781 + 1563 WP_001084096.1 type I-E CRISPR-associated protein Cse1/CasA -

Domains

The domains were predicted by HMMER and were sorted by score.

Toxin


No domain identified.



Sequences

Toxin        


Download         Length: 50 a.a.        Molecular weight: 5602.81 Da        Isoelectric Point: 7.7899

>WP_000956460.1 TA_12 Toxin
MLTKYALVAIIVLCFTVLGFTLMVGDSLCELSIRERGMEFKAVLAYESKK*

Download         Length: 153 bp

>WP_000956460.1 TA_12 Toxin
ATGCTGACAAAATATGCCCTTGTGGCAATCATAGTGCTGTGTTTTACAGTACTGGGATTC
ACGCTGATGGTAGGCGACTCGTTGTGTGAGTTGAGTATCAGAGAACGTGGTATGGAGTTT
AAGGCAGTTCTCGCTTACGAATCGAAGAAGTAG

Antitoxin


Download         Length: 55 bp

>NuclAT_25 TA_12 Antitoxin
ACAAAAGCCCCAGGCGATATTTCTATCAACCTGAGGCTTACGTTCGAACCCAAAC

Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value