TAfinder detailed results

Overview

Job ID 9mizKMmBqU
Sequence name Escherichia coli strain DH5alpha chromosome, complete genome.
Predicted type IV

Toxin (Protein)


Predicted family cptA (T6368) Predicted domain Cpta_toxin (Cpta)
Locus tag C1467_RS04555 Length 135 a.a.
Coordinates 861689..862096 (+)

Antitoxin (Protein)


Predicted family cptB (AT6368) Predicted domain -
Locus tag C1467_RS04550 Length 88 a.a.
Coordinates 861442..861708 (+)

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
C1467_RS04525 856730..857473 + 744 WP_000951964.1 SDR family oxidoreductase -
C1467_RS04530 857530..858963 - 1434 WP_001307385.1 6-phospho-beta-glucosidase BglA -
C1467_RS04535 859008..859319 + 312 WP_001182954.1 N(4)-acetylcytidine aminohydrolase -
C1467_RS04540 859483..860142 + 660 WP_000250274.1 hemolysin III family protein -
C1467_RS04545 860219..861199 - 981 WP_000886062.1 tRNA-modifying protein YgfZ -
C1467_RS04550 861442..861708 + 267 WP_000354046.1 FAD assembly factor SdhE Antitoxin
C1467_RS04555 861689..862096 + 408 WP_000244772.1 protein YgfX Toxin
C1467_RS04560 862136..862657 - 522 WP_001055874.1 flavodoxin FldB -
C1467_RS04565 862769..863665 + 897 WP_000806638.1 site-specific tyrosine recombinase XerD -
C1467_RS04570 863690..864400 + 711 WP_000715214.1 bifunctional protein-disulfide isomerase/oxidoreductase DsbC -
C1467_RS04575 864406..866139 + 1734 WP_000813215.1 single-stranded-DNA-specific exonuclease RecJ -

Domains

The domains were predicted by HMMER and were sorted by score.

Toxin

Cpta_toxin (Cpta) (E-value: 4.1e-46, Score:154.5)

(2-132)

Antitoxin


No domain identified.



Sequences

Toxin        


Download         Length: 135 a.a.        Molecular weight: 16048.02 Da        Isoelectric Point: 11.2511

>WP_000244772.1 TA_10 Toxin
VVLWQSDLRVSWRAQWLSLLIHGLVAAVILLMPWPLSYTPLWMVLLSLVVFDCVRSQRRI
NARQGEIRLLMDGRLRWQGQEWCIVKAPWMIKSGMMLRLRSDGGKRQHLWLAADSMDEAE
WRDLRRILLQQETQR*

Download         Length: 408 bp

>WP_000244772.1 TA_10 Toxin
GTGGTCCTGTGGCAATCTGATTTGCGCGTCTCCTGGCGCGCACAGTGGCTTTCCTTGCTG
ATTCATGGGCTGGTTGCCGCTGTTATTTTACTCATGCCCTGGCCACTCAGTTACACCCCG
TTATGGATGGTGTTACTTTCGCTGGTGGTGTTTGATTGCGTTCGCAGCCAGCGGCGTATT
AATGCTCGCCAGGGGGAAATTCGCTTGTTGATGGACGGGCGTTTGCGTTGGCAAGGGCAG
GAGTGGTGCATCGTCAAAGCACCGTGGATGATTAAGAGCGGCATGATGCTGCGTTTACGT
TCTGATGGCGGTAAACGGCAACATTTATGGCTGGCAGCCGACAGCATGGACGAAGCCGAA
TGGCGGGATTTACGGCGGATTTTGTTGCAACAAGAGACGCAAAGATAA

Antitoxin


Download         Length: 88 a.a.        Molecular weight: 10547.12 Da        Isoelectric Point: 5.1599

>WP_000354046.1 TA_10 Antitoxin
MDINNKARIHWACRRGMRELDISIMPFFEHEYDSLSDDEKRIFIRLLECDDPDLFNWLMN
HGKPADAELEMMVRLIQTRNRERGPVAI*

Download         Length: 267 bp

>WP_000354046.1 TA_10 Antitoxin
ATGGACATTAACAACAAAGCCCGCATTCATTGGGCATGCCGCCGTGGTATGCGCGAACTC
GATATTTCAATCATGCCGTTTTTCGAACATGAGTACGACAGCTTAAGCGATGACGAAAAA
CGCATCTTTATTCGTCTGCTGGAATGTGACGATCCGGACCTGTTTAACTGGCTGATGAAT
CACGGTAAACCGGCCGATGCAGAACTGGAAATGATGGTCCGACTCATCCAGACACGGAAC
CGGGAACGTGGTCCTGTGGCAATCTGA

Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
T6368 Escherichia coli str. K-12 substr. MG1655

99.259

100

0.985
Protein Organism Identities (%) Coverage (%) Ha-value
AT6368 Escherichia coli str. K-12 substr. MG1655

100

100

0.989
AT10045 Shewanella oneidensis MR-1

53.086

98.78

0.483
AT10068 Acinetobacter baumannii strain ATCC 17978

33.871

72.941

0.236