TAfinder detailed results
Overview
| Job ID | 9mizKMmBqU | ||
| Sequence name | Escherichia coli strain DH5alpha chromosome, complete genome. | ||
| Predicted type | II | ||
Orphan Antitoxin (Protein)
| Predicted family | panA (AT10015) | Predicted domain | - |
| Locus tag | C1467_RS20895 | Length | 271 a.a. |
| Coordinates | 4023153..4023968 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| C1467_RS20870 | 4019459..4022365 | + | 2907 | WP_001117011.1 | RNA polymerase-associated protein RapA | - |
| C1467_RS20875 | 4022377..4023036 | + | 660 | WP_000525176.1 | bifunctional tRNA pseudouridine(32) synthase/23S rRNA pseudouridine(746) synthase RluA | - |
| C1467_RS20880 | 4023153..4023968 | - | 816 | WP_001200573.1 | co-chaperone DjlA | Antitoxin |
| C1467_RS20885 | 4024223..4026577 | + | 2355 | WP_000746176.1 | LPS assembly protein LptD | - |
| C1467_RS20890 | 4026630..4027916 | + | 1287 | WP_000800457.1 | peptidylprolyl isomerase SurA | - |
| C1467_RS20895 | 4027916..4028905 | + | 990 | WP_000241256.1 | 4-hydroxythreonine-4-phosphate dehydrogenase PdxA | - |
Domains
The domains were predicted by HMMER and were sorted by score.
Orphan Antitoxin
No domain identified.
Sequences
Orphan Antitoxin
Download Length: Molecular weight: 30565.34 Da Isoelectric Point: 10.3140
>WP_001200573.1 Orphan_TA_96 Antitoxin
MQYWGKIIGVAVALLMGGGFWGVVLGLLIGHMFDKARSRKMAWFANQRERQALFFATTFE
VMGHLTKSKGRVTEADIHIASQLMDRMNLHGASRTAAQNAFRVGKSDNYPLREKMRQFRS
VCFGRFDLIRMFLEIQIQAAFADGSLHPNERAVLYVIAEELGISRAQFDQFLRMMQGGAQ
FGGGYQQQSGGGNWQQAQRGPTLEDACNVLGVKPTDDATTIKRAYRKLMSEHHPDKLVAK
GLPPEMMEMAKQKAQEIQQAYELIKQQKGFK*
MQYWGKIIGVAVALLMGGGFWGVVLGLLIGHMFDKARSRKMAWFANQRERQALFFATTFE
VMGHLTKSKGRVTEADIHIASQLMDRMNLHGASRTAAQNAFRVGKSDNYPLREKMRQFRS
VCFGRFDLIRMFLEIQIQAAFADGSLHPNERAVLYVIAEELGISRAQFDQFLRMMQGGAQ
FGGGYQQQSGGGNWQQAQRGPTLEDACNVLGVKPTDDATTIKRAYRKLMSEHHPDKLVAK
GLPPEMMEMAKQKAQEIQQAYELIKQQKGFK*
Download Length: 816 bp
>WP_001200573.1 Orphan_TA_96 Antitoxin
TTATTTAAACCCTTTCTGCTGCTTTATCAGCTCATATGCCTGCTGAATTTCCTGCGCTTT
CTGCTTCGCCATCTCCATCATCTCAGGCGGCAAACCTTTCGCCACCAGCTTATCGGGATG
GTGTTCACTCATCAGCTTACGGTAGGCACGTTTGATGGTGGTCGCATCATCCGTCGGCTT
CACGCCCAGCACATTACAGGCATCTTCCAGCGTCGGGCCACGCTGCGCTTGCTGCCAGTT
ACCACCGCCAGATTGCTGCTGATAACCGCCGCCAAACTGTGCACCGCCCTGCATCATGCG
CAAAAACTGGTCAAACTGGGCGCGGGAGATCCCTAATTCTTCAGCAATGACATACAGCAC
CGCCCGTTCATTCGGGTGCAGTGAACCATCAGCAAACGCCGCCTGAATCTGGATCTCCAG
AAACATACGAATTAAGTCAAAACGACCAAAGCAGACACTGCGAAACTGGCGCATCTTTTC
GCGCAGCGGGTAATTGTCTGATTTTCCCACCCGGAACGCATTTTGCGCCGCAGTACGGGA
AGCGCCATGAAGATTCATTCGGTCCATCAACTGGCTGGCGATATGAATATCAGCCTCCGT
GACGCGACCTTTGGATTTGGTTAAATGCCCCATCACTTCAAAAGTGGTGGCAAAAAACAG
CGCCTGACGCTCACGCTGGTTGGCGAACCACGCCATTTTACGGCTACGGGCTTTATCAAA
CATATGGCCAATTAACAGGCCTAACACTACGCCCCAAAAGCCGCCGCCCATCAGTAAGGC
CACGGCCACGCCAATGATTTTTCCCCAATACTGCAT
TTATTTAAACCCTTTCTGCTGCTTTATCAGCTCATATGCCTGCTGAATTTCCTGCGCTTT
CTGCTTCGCCATCTCCATCATCTCAGGCGGCAAACCTTTCGCCACCAGCTTATCGGGATG
GTGTTCACTCATCAGCTTACGGTAGGCACGTTTGATGGTGGTCGCATCATCCGTCGGCTT
CACGCCCAGCACATTACAGGCATCTTCCAGCGTCGGGCCACGCTGCGCTTGCTGCCAGTT
ACCACCGCCAGATTGCTGCTGATAACCGCCGCCAAACTGTGCACCGCCCTGCATCATGCG
CAAAAACTGGTCAAACTGGGCGCGGGAGATCCCTAATTCTTCAGCAATGACATACAGCAC
CGCCCGTTCATTCGGGTGCAGTGAACCATCAGCAAACGCCGCCTGAATCTGGATCTCCAG
AAACATACGAATTAAGTCAAAACGACCAAAGCAGACACTGCGAAACTGGCGCATCTTTTC
GCGCAGCGGGTAATTGTCTGATTTTCCCACCCGGAACGCATTTTGCGCCGCAGTACGGGA
AGCGCCATGAAGATTCATTCGGTCCATCAACTGGCTGGCGATATGAATATCAGCCTCCGT
GACGCGACCTTTGGATTTGGTTAAATGCCCCATCACTTCAAAAGTGGTGGCAAAAAACAG
CGCCTGACGCTCACGCTGGTTGGCGAACCACGCCATTTTACGGCTACGGGCTTTATCAAA
CATATGGCCAATTAACAGGCCTAACACTACGCCCCAAAAGCCGCCGCCCATCAGTAAGGC
CACGGCCACGCCAATGATTTTTCCCCAATACTGCAT
Similar Proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| AT10015 | Corynebacterium doosanense CAU 212 = DSM 45436 strain CAU 212(T) |
31.081 |
39.362 |
0.085 |