TAfinder detailed results
Overview
| Job ID | 9mizKMmBqU | ||
| Sequence name | Escherichia coli strain DH5alpha chromosome, complete genome. | ||
| Predicted type | II | ||
Orphan Antitoxin (Protein)
| Predicted family | vapB (AT131) | Predicted domain | - |
| Locus tag | C1467_RS25240 | Length | 152 a.a. |
| Coordinates | 3992759..3993217 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| C1467_RS20720 | 3988198..3989685 | - | 1488 | WP_000785152.1 | UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase | - |
| C1467_RS20725 | 3989672..3991438 | - | 1767 | WP_000642196.1 | peptidoglycan glycosyltransferase FtsI | - |
| C1467_RS20730 | 3991454..3991819 | - | 366 | WP_000625658.1 | cell division protein FtsL | - |
| C1467_RS20735 | 3991816..3992757 | - | 942 | WP_000970479.1 | 16S rRNA (cytosine(1402)-N(4))-methyltransferase RsmH | - |
| C1467_RS20740 | 3992759..3993217 | - | 459 | WP_001295770.1 | division/cell wall cluster transcriptional repressor MraZ | Antitoxin |
| C1467_RS20755 | 3993819..3994823 | - | 1005 | WP_000762401.1 | catabolite repressor/activator | - |
| C1467_RS20760 | 3994905..3994991 | - | 87 | WP_001303787.1 | fruR/shl operon leader peptide | - |
| C1467_RS20765 | 3995003..3995494 | - | 492 | WP_001252744.1 | acetolactate synthase small subunit | - |
| C1467_RS20770 | 3995497..3997221 | - | 1725 | WP_000425668.1 | acetolactate synthase 3 large subunit | - |
| C1467_RS25240 | 3997340..3997384 | + | 45 | WP_128566915.1 | hypothetical protein | - |
Domains
The domains were predicted by HMMER and were sorted by score.
Orphan Antitoxin
No domain identified.
Sequences
Orphan Antitoxin
Download Length: Molecular weight: 17359.99 Da Isoelectric Point: 5.5957
>WP_001295770.1 Orphan_TA_95 Antitoxin
MFRGATLVNLDSKGRLSVPTRYREQLLENAAGQMVCTIDIHHPCLLLYPLPEWEIIEQKL
SRLSSMNPVERRVQRLLLGHASECQMDGAGRLLIAPVLRQHAGLTKEVMLVGQFNKFELW
DETTWHQQVKEDIDAEQLATGDLSERLQDLSL*
MFRGATLVNLDSKGRLSVPTRYREQLLENAAGQMVCTIDIHHPCLLLYPLPEWEIIEQKL
SRLSSMNPVERRVQRLLLGHASECQMDGAGRLLIAPVLRQHAGLTKEVMLVGQFNKFELW
DETTWHQQVKEDIDAEQLATGDLSERLQDLSL*
Download Length: 459 bp
>WP_001295770.1 Orphan_TA_95 Antitoxin
TTATAGAGACAAGTCCTGCAGTCGCTCCGATAAGTCTCCGGTAGCCAACTGCTCTGCGTC
GATATCTTCCTTGACCTGTTGATGCCAGGTTGTTTCATCCCACAGCTCAAACTTGTTGAA
CTGTCCAACCAGCATCACTTCTTTTGTCAGCCCGGCATGTTGCCGCAGTACTGGCGCGAT
TAACAATCGACCTGCGCCATCCATCTGACATTCGCTGGCATGACCTAACAGTAGGCGCTG
CACACGGCGCTCAACCGGGTTCATGCTCGACAGACGCGATAATTTTTGCTCGATAATTTC
CCATTCAGGCAGGGGGTAAAGCAGCAGGCACGGGTGATGAATGTCAATGGTGCAAACCAT
TTGACCGGCAGCGTTCTCAAGCAGCTGTTCCCGGTAACGGGTAGGCACTGATAAGCGCCC
TTTGCTGTCGAGATTGACTAACGTTGCTCCCCGGAACAT
TTATAGAGACAAGTCCTGCAGTCGCTCCGATAAGTCTCCGGTAGCCAACTGCTCTGCGTC
GATATCTTCCTTGACCTGTTGATGCCAGGTTGTTTCATCCCACAGCTCAAACTTGTTGAA
CTGTCCAACCAGCATCACTTCTTTTGTCAGCCCGGCATGTTGCCGCAGTACTGGCGCGAT
TAACAATCGACCTGCGCCATCCATCTGACATTCGCTGGCATGACCTAACAGTAGGCGCTG
CACACGGCGCTCAACCGGGTTCATGCTCGACAGACGCGATAATTTTTGCTCGATAATTTC
CCATTCAGGCAGGGGGTAAAGCAGCAGGCACGGGTGATGAATGTCAATGGTGCAAACCAT
TTGACCGGCAGCGTTCTCAAGCAGCTGTTCCCGGTAACGGGTAGGCACTGATAAGCGCCC
TTTGCTGTCGAGATTGACTAACGTTGCTCCCCGGAACAT
Similar Proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| AT131 | Mycobacterium tuberculosis H37Rv |
33.333 |
55.882 |
0.124 |