TAfinder detailed results
Overview
| Job ID | 9mizKMmBqU | ||
| Sequence name | Escherichia coli strain DH5alpha chromosome, complete genome. | ||
| Predicted type | II | ||
Orphan Toxin (Protein)
| Predicted family | doc (T10179) | Predicted domain | - |
| Locus tag | C1467_RS19855 | Length | 166 a.a. |
| Coordinates | 3811337..3811837 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| C1467_RS19820 | 3807770..3809911 | - | 2142 | WP_000103316.1 | type VI secretion system tip protein VgrG | - |
| C1467_RS25230 | 3809951..3810088 | - | 138 | WP_001297813.1 | hypothetical protein | - |
| C1467_RS19830 | 3810121..3810639 | - | 519 | WP_001142958.1 | Hcp family type VI secretion system effector | - |
| C1467_RS19835 | 3811337..3811837 | + | 501 | WP_000037395.1 | type VI secretion system contractile sheath small subunit | Toxin |
| C1467_RS19840 | 3811872..3812096 | + | 225 | WP_000123970.1 | hypothetical protein | - |
| C1467_RS19845 | 3812147..3813622 | + | 1476 | WP_000056978.1 | type VI secretion system contractile sheath large subunit | - |
| C1467_RS19850 | 3813629..3814042 | + | 414 | WP_000611742.1 | type VI secretion system baseplate subunit TssE | - |
| C1467_RS19855 | 3814046..3815896 | + | 1851 | WP_000393844.1 | type VI secretion system baseplate subunit TssF | - |
Domains
The domains were predicted by HMMER and were sorted by score.
Orphan Toxin
No domain identified.
Sequences
Orphan Toxin
Download Length: Molecular weight: 18036.41 Da Isoelectric Point: 4.5248
>WP_000037395.1 Orphan_TA_92 Toxin
MSKKFEGSVAPRERINISYVPKTDGQTAEVELPLNMLVVGDTGNTQETSSLDERQAVSVN
KHNFGAVMAEAAIGLNFTVPATLKGSTTDDELNVALNIKSLDDFSPDSVARQVPEVNKLL
ELREALTALKGPMGNLPAFRTQLQALLENEESREQLLKEIGLVSNK*
MSKKFEGSVAPRERINISYVPKTDGQTAEVELPLNMLVVGDTGNTQETSSLDERQAVSVN
KHNFGAVMAEAAIGLNFTVPATLKGSTTDDELNVALNIKSLDDFSPDSVARQVPEVNKLL
ELREALTALKGPMGNLPAFRTQLQALLENEESREQLLKEIGLVSNK*
Download Length: 501 bp
>WP_000037395.1 Orphan_TA_92 Toxin
ATGAGCAAAAAATTTGAAGGCAGCGTCGCGCCTCGCGAGCGTATTAATATATCGTATGTC
CCAAAAACAGATGGCCAGACGGCTGAAGTGGAACTTCCGCTTAACATGCTCGTTGTCGGC
GATACCGGAAATACGCAGGAAACATCCTCACTGGATGAACGTCAGGCAGTTTCCGTTAAC
AAGCACAATTTCGGTGCAGTGATGGCTGAAGCAGCCATTGGCCTCAATTTTACTGTCCCC
GCCACCCTGAAGGGAAGCACAACAGACGATGAACTGAATGTGGCGCTGAATATCAAATCA
CTGGATGATTTTTCACCAGATAGCGTGGCCCGGCAGGTTCCGGAAGTGAATAAATTGCTG
GAACTGCGTGAAGCACTGACTGCACTGAAGGGGCCGATGGGTAACCTTCCGGCATTCCGT
ACCCAGCTCCAGGCATTGCTGGAAAATGAAGAGTCCCGCGAGCAGTTGCTCAAAGAAATC
GGTCTGGTGAGCAATAAATAA
ATGAGCAAAAAATTTGAAGGCAGCGTCGCGCCTCGCGAGCGTATTAATATATCGTATGTC
CCAAAAACAGATGGCCAGACGGCTGAAGTGGAACTTCCGCTTAACATGCTCGTTGTCGGC
GATACCGGAAATACGCAGGAAACATCCTCACTGGATGAACGTCAGGCAGTTTCCGTTAAC
AAGCACAATTTCGGTGCAGTGATGGCTGAAGCAGCCATTGGCCTCAATTTTACTGTCCCC
GCCACCCTGAAGGGAAGCACAACAGACGATGAACTGAATGTGGCGCTGAATATCAAATCA
CTGGATGATTTTTCACCAGATAGCGTGGCCCGGCAGGTTCCGGAAGTGAATAAATTGCTG
GAACTGCGTGAAGCACTGACTGCACTGAAGGGGCCGATGGGTAACCTTCCGGCATTCCGT
ACCCAGCTCCAGGCATTGCTGGAAAATGAAGAGTCCCGCGAGCAGTTGCTCAAAGAAATC
GGTCTGGTGAGCAATAAATAA
Similar Proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| T10179 | Staphylococcus epidermidis isolate BPH0662 |
32.653 |
37.405 |
0.096 |