TAfinder detailed results
Overview
| Job ID | 9mizKMmBqU | ||
| Sequence name | Escherichia coli strain DH5alpha chromosome, complete genome. | ||
| Predicted type | II | ||
Orphan Toxin (Protein)
| Predicted family | mazF (T137) | Predicted domain | cd06171 (Sigma70_r4) |
| Locus tag | C1467_RS19575 | Length | 238 a.a. |
| Coordinates | 3756204..3756920 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| C1467_RS19510 | 3751442..3752581 | - | 1140 | WP_000528869.1 | RNA ligase RtcB family protein | - |
| C1467_RS19520 | 3752827..3753279 | - | 453 | WP_001059857.1 | GNAT family N-acetyltransferase | - |
| C1467_RS19525 | 3753276..3754331 | - | 1056 | WP_001226182.1 | DNA polymerase IV | - |
| C1467_RS19530 | 3754402..3755325 | - | 924 | WP_001232561.1 | putative lateral flagellar export/assembly protein LafU | - |
| C1467_RS19535 | 3755328..3756191 | - | 864 | WP_001169518.1 | flagellar motor stator protein MotA | - |
| C1467_RS19540 | 3756204..3756920 | - | 717 | WP_000938729.1 | FliA/WhiG family RNA polymerase sigma factor | Toxin |
| C1467_RS19545 | 3756940..3757407 | - | 468 | WP_000725257.1 | flagellar basal body-associated FliL family protein | - |
| C1467_RS19550 | 3757415..3758476 | - | 1062 | WP_001067473.1 | flagellar hook-length control protein FliK | - |
| C1467_RS19555 | 3758473..3758784 | - | 312 | WP_000414996.1 | hypothetical protein | - |
| C1467_RS19560 | 3758789..3759181 | - | 393 | WP_000285319.1 | flagellar export chaperone FliS | - |
| C1467_RS19565 | 3759204..3760520 | - | 1317 | WP_000609676.1 | flagellar filament capping protein FliD | - |
| C1467_RS19575 | 3760727..3761641 | - | 915 | WP_000949083.1 | lateral flagellin LafA | - |
Domains
The domains were predicted by HMMER and were sorted by score.
Orphan Toxin
No domain identified.
Sequences
Orphan Toxin
Download Length: Molecular weight: 27532.51 Da Isoelectric Point: 4.8307
>WP_000938729.1 Orphan_TA_90 Toxin
MLQDVFESEEFAAAPVLTPQQESHYLQAYLPLVRKVVRQLAPQCNCIIDRQDMEQTALMG
LLNAIRRYGLPDEGFAGYAVHRIRGAILDELRALDWRPRQLRQKYHQMKDLIRETRKKLG
HEPEWSELAVEGISHEDYLEYQQLEGAETLASLDELLNGEGPGIPLVGRELEDQFVTQQM
LQQALSQLSEKEQLILSMYYQHEMNLKEIALVLGLTEARICQLNKQIAQKIRDFVYPN*
MLQDVFESEEFAAAPVLTPQQESHYLQAYLPLVRKVVRQLAPQCNCIIDRQDMEQTALMG
LLNAIRRYGLPDEGFAGYAVHRIRGAILDELRALDWRPRQLRQKYHQMKDLIRETRKKLG
HEPEWSELAVEGISHEDYLEYQQLEGAETLASLDELLNGEGPGIPLVGRELEDQFVTQQM
LQQALSQLSEKEQLILSMYYQHEMNLKEIALVLGLTEARICQLNKQIAQKIRDFVYPN*
Download Length: 717 bp
>WP_000938729.1 Orphan_TA_90 Toxin
TTAATTCGGATAGACAAAATCACGAATTTTCTGCGCGATCTGTTTATTCAGTTGACAAAT
TCGGGCCTCGGTTAGCCCTAATACCAGCGCAATCTCTTTGAGATTCATCTCATGCTGGTA
ATACATGGAGAGGATCAGTTGCTCTTTTTCGCTTAATTGTGAAAGCGCCTGTTGCAGCAT
TTGCTGAGTGACAAACTGATCTTCCAGCTCCCGGCCAACAAGCGGAATGCCTGGCCCTTC
GCCGTTCAGCAGTTCGTCCAGGCTGGCGAGCGTTTCCGCCCCTTCCAGTTGCTGATATTC
GAGATAATCTTCATGTGAGATCCCTTCCACGGCCAGTTCTGACCACTCCGGTTCGTGCCC
CAGTTTTTTGCGCGTTTCGCGAATCAGATCTTTCATCTGATGATATTTCTGTCGCAGCTG
GCGCGGTCGCCAGTCGAGAGCGCGCAGCTCATCCAGGATCGCGCCGCGAATACGATGCAC
GGCATAGCCCGCAAAACCTTCGTCCGGCAGCCCGTAGCGGCGGATGGCATTAAGCAGCCC
CATTAACGCCGTTTGTTCCATATCCTGACGATCAATAATGCAATTACACTGCGGGGCAAG
TTGCCGCACCACTTTACGCACCAACGGTAAATAGGCCTGCAAGTAGTGGCTCTCCTGCTG
CGGGGTTAATACCGGCGCGGCAGCAAATTCTTCCGACTCGAATACATCCTGTAGCAT
TTAATTCGGATAGACAAAATCACGAATTTTCTGCGCGATCTGTTTATTCAGTTGACAAAT
TCGGGCCTCGGTTAGCCCTAATACCAGCGCAATCTCTTTGAGATTCATCTCATGCTGGTA
ATACATGGAGAGGATCAGTTGCTCTTTTTCGCTTAATTGTGAAAGCGCCTGTTGCAGCAT
TTGCTGAGTGACAAACTGATCTTCCAGCTCCCGGCCAACAAGCGGAATGCCTGGCCCTTC
GCCGTTCAGCAGTTCGTCCAGGCTGGCGAGCGTTTCCGCCCCTTCCAGTTGCTGATATTC
GAGATAATCTTCATGTGAGATCCCTTCCACGGCCAGTTCTGACCACTCCGGTTCGTGCCC
CAGTTTTTTGCGCGTTTCGCGAATCAGATCTTTCATCTGATGATATTTCTGTCGCAGCTG
GCGCGGTCGCCAGTCGAGAGCGCGCAGCTCATCCAGGATCGCGCCGCGAATACGATGCAC
GGCATAGCCCGCAAAACCTTCGTCCGGCAGCCCGTAGCGGCGGATGGCATTAAGCAGCCC
CATTAACGCCGTTTGTTCCATATCCTGACGATCAATAATGCAATTACACTGCGGGGCAAG
TTGCCGCACCACTTTACGCACCAACGGTAAATAGGCCTGCAAGTAGTGGCTCTCCTGCTG
CGGGGTTAATACCGGCGCGGCAGCAAATTCTTCCGACTCGAATACATCCTGTAGCAT
Similar Proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| T137 | Deinococcus radiodurans R1 |
41.026 |
33.333 |
0.067 |