TAfinder detailed results
Overview
| Job ID | 9mizKMmBqU | ||
| Sequence name | Escherichia coli strain DH5alpha chromosome, complete genome. | ||
| Predicted type | II | ||
Orphan Antitoxin (Protein)
| Predicted family | vapB (AT6245) | Predicted domain | PF00440 (TetR_N) |
| Locus tag | C1467_RS15345 | Length | 212 a.a. |
| Coordinates | 2919975..2920613 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| C1467_RS15305 | 2915709..2915918 | - | 210 | WP_000979516.1 | hypothetical protein | - |
| C1467_RS15310 | 2915973..2919935 | + | 3963 | WP_001349943.1 | trifunctional transcriptional regulator/proline dehydrogenase/L-glutamate gamma-semialdehyde dehydrogenase | - |
| C1467_RS15315 | 2919975..2920613 | - | 639 | WP_001331086.1 | HTH-type transcriptional regulator RutR | Antitoxin |
| C1467_RS15320 | 2920901..2921992 | + | 1092 | WP_001349944.1 | pyrimidine utilization protein A | - |
| C1467_RS15325 | 2921992..2922684 | + | 693 | WP_001307708.1 | peroxyureidoacrylate/ureidoacrylate amidohydrolase RutB | - |
| C1467_RS15330 | 2922696..2923082 | + | 387 | WP_001126777.1 | 3-aminoacrylate deaminase | - |
| C1467_RS15335 | 2923090..2923890 | + | 801 | WP_001345413.1 | pyrimidine utilization protein D | - |
| C1467_RS15340 | 2923900..2924490 | + | 591 | WP_001001171.1 | malonic semialdehyde reductase | - |
| C1467_RS15345 | 2924501..2924995 | + | 495 | WP_001028095.1 | pyrimidine utilization flavin reductase protein F | - |
Domains
The domains were predicted by HMMER and were sorted by score.
Orphan Antitoxin
No domain identified.
Sequences
Orphan Antitoxin
Download Length: Molecular weight: 23714.70 Da Isoelectric Point: 9.5412
>WP_001331086.1 Orphan_TA_69 Antitoxin
MTQGAVKTKGKRSRAVSAKKKAILSAALDTFSQFGFHGTRLEQIAELAGVSKTNLLYYFP
SKEALYIAVLRQILDIWLAPLKAFREDFAPLAAIKEYIRLKLEVSRDYPQASRLFCMEML
AGAPLLMDELTGDLKALIDEKSALIAGWVKSGKLAPIDPQHLIFMIWASTQHYADFAPQV
EAVTGATLRDEVFFNQTVENVQRIIIEGIRPR*
MTQGAVKTKGKRSRAVSAKKKAILSAALDTFSQFGFHGTRLEQIAELAGVSKTNLLYYFP
SKEALYIAVLRQILDIWLAPLKAFREDFAPLAAIKEYIRLKLEVSRDYPQASRLFCMEML
AGAPLLMDELTGDLKALIDEKSALIAGWVKSGKLAPIDPQHLIFMIWASTQHYADFAPQV
EAVTGATLRDEVFFNQTVENVQRIIIEGIRPR*
Download Length: 639 bp
>WP_001331086.1 Orphan_TA_69 Antitoxin
TTAACGTGGTCGAATCCCCTCAATAATAATCCGCTGCACGTTTTCAACCGTTTGATTGAA
AAATACCTCATCGCGCAACGTCGCGCCTGTCACCGCCTCCACCTGAGGGGCAAAATCGGC
GTAATGTTGAGTGGAAGCCCAAATCATAAAAATCAAATGCTGCGGATCAATCGGCGCGAG
TTTGCCGCTTTTGACCCAACCGGCAATCAGCGCCGATTTCTCATCAATTAATGCCTTCAA
ATCGCCCGTCAGTTCATCCATTAACAGCGGCGCGCCTGCCAGCATCTCCATACAGAACAG
GCGCGAAGCCTGCGGATAATCGCGGGAGACTTCCAGCTTCAGACGGATGTACTCTTTGAT
CGCCGCCAGCGGGGCGAAATCTTCTCGAAACGCTTTTAACGGTGCCAGCCAGATATCGAG
AATCTGCCGCAGCACGGCAATATACAGCGCCTCTTTTGACGGAAAGTAATACAGCAGATT
GGTTTTTGAAACACCCGCCAACTCTGCGATCTGCTCCAGCCTTGTGCCGTGAAAACCGAA
TTGTGAAAAAGTGTCCAGTGCTGCGCTAAGAATCGCTTTTTTCTTCGCGCTTACTGCGCG
CGAACGTTTACCCTTTGTTTTCACTGCGCCTTGCGTCAT
TTAACGTGGTCGAATCCCCTCAATAATAATCCGCTGCACGTTTTCAACCGTTTGATTGAA
AAATACCTCATCGCGCAACGTCGCGCCTGTCACCGCCTCCACCTGAGGGGCAAAATCGGC
GTAATGTTGAGTGGAAGCCCAAATCATAAAAATCAAATGCTGCGGATCAATCGGCGCGAG
TTTGCCGCTTTTGACCCAACCGGCAATCAGCGCCGATTTCTCATCAATTAATGCCTTCAA
ATCGCCCGTCAGTTCATCCATTAACAGCGGCGCGCCTGCCAGCATCTCCATACAGAACAG
GCGCGAAGCCTGCGGATAATCGCGGGAGACTTCCAGCTTCAGACGGATGTACTCTTTGAT
CGCCGCCAGCGGGGCGAAATCTTCTCGAAACGCTTTTAACGGTGCCAGCCAGATATCGAG
AATCTGCCGCAGCACGGCAATATACAGCGCCTCTTTTGACGGAAAGTAATACAGCAGATT
GGTTTTTGAAACACCCGCCAACTCTGCGATCTGCTCCAGCCTTGTGCCGTGAAAACCGAA
TTGTGAAAAAGTGTCCAGTGCTGCGCTAAGAATCGCTTTTTTCTTCGCGCTTACTGCGCG
CGAACGTTTACCCTTTGTTTTCACTGCGCCTTGCGTCAT
Similar Proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| AT6245 | Mycobacterium tuberculosis H37Rv |
41.509 |
13.054 |
0.103 |
| AT6245 | Mycobacterium tuberculosis H37Rv |
24.468 |
23.153 |
0.108 |