TAfinder detailed results

Overview

Job ID 9mizKMmBqU
Sequence name Escherichia coli strain DH5alpha chromosome, complete genome.
Predicted type II

Orphan Antitoxin (Protein)


Predicted family PsyrA (AT6032) Predicted domain -
Locus tag C1467_RS13595 Length 57 a.a.
Coordinates 2601001..2601174 (-)

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
C1467_RS13545 2596555..2596749 + 195 WP_001317028.1 type I toxin-antitoxin system endodeoxyribonuclease toxin RalR -
C1467_RS13550 2596742..2596951 + 210 WP_000276809.1 double-strand break reduction protein RcbA -
C1467_RS13555 2597030..2597245 + 216 WP_000079604.1 excisionase XisR -
C1467_RS13560 2597247..2598482 + 1236 WP_000040852.1 site-specific integrase -
C1467_RS13565 2598534..2599469 + 936 WP_001157422.1 tRNA 2-thiocytidine(32) synthetase TtcA -
C1467_RS13570 2599598..2600971 - 1374 WP_000123740.1 ATP-dependent RNA helicase DbpA -
C1467_RS25570 2601001..2601174 - 174 WP_001296046.1 protein YnaL Antitoxin
C1467_RS13580 2601449..2602432 - 984 WP_000387388.1 zinc transporter ZntB -
C1467_RS25340 2602446..2602493 - 48 WP_211180494.1 protein YnaN -
C1467_RS13585 2602687..2603919 + 1233 WP_001307164.1 diguanylate cyclase DgcM -
C1467_RS13590 2603940..2604503 - 564 WP_001046821.1 DNA endonuclease SmrA -
C1467_RS13595 2604833..2605741 - 909 WP_000885467.1 LysR family transcriptional regulator -

Domains

The domains were predicted by HMMER and were sorted by score.

Orphan Antitoxin


No domain identified.



Sequences

Orphan Antitoxin        


Download         Length:         Molecular weight: 6427.51 Da        Isoelectric Point: 5.7207

>WP_001296046.1 Orphan_TA_63 Antitoxin
MTTLIYLQIPVPEPIPGDPVPVPDPIPRPQPMPDPPPDEEPIKLSHRERRSARIRAC*

Download         Length: 174 bp

>WP_001296046.1 Orphan_TA_63 Antitoxin
TTAGCAGGCGCGTATCCTCGCAGATCTACGCTCACGATGCGACAATTTAATCGGTTCTTC
ATCAGGTGGTGGGTCAGGCATGGGTTGCGGGCGAGGGATCGGATCGGGCACTGGAACAGG
ATCGCCAGGAATCGGTTCAGGGACAGGAATTTGCAAATAAATAAGTGTCGTCAT

Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
AT6032 Pseudomonas syringae pv. syringae B728a

37.778

9.89

0.293