TAfinder detailed results
Overview
| Job ID | 9mizKMmBqU | ||
| Sequence name | Escherichia coli strain DH5alpha chromosome, complete genome. | ||
| Predicted type | II | ||
Orphan Antitoxin (Protein)
| Predicted family | higA (AT6146) | Predicted domain | TIGR02607 (HigA) |
| Locus tag | C1467_RS12730 | Length | 94 a.a. |
| Coordinates | 2437427..2437711 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| C1467_RS12685 | 2433051..2433482 | - | 432 | WP_000152308.1 | peroxiredoxin OsmC | - |
| C1467_RS12695 | 2433828..2434043 | + | 216 | WP_000495766.1 | biofilm-dependent modulation protein | - |
| C1467_RS12700 | 2434145..2434282 | + | 138 | WP_000841554.1 | stationary-phase-induced ribosome-associated protein | - |
| C1467_RS12705 | 2434439..2436136 | + | 1698 | WP_000433464.1 | malate dehydrogenase | - |
| C1467_RS12710 | 2436270..2437280 | + | 1011 | WP_000642407.1 | alcohol dehydrogenase AdhP | - |
| C1467_RS12715 | 2437427..2437711 | + | 285 | WP_000781370.1 | HigA family addiction module antitoxin | Antitoxin |
| C1467_RS12720 | 2437762..2438415 | - | 654 | WP_000045648.1 | formate dehydrogenase-N subunit gamma | - |
| C1467_RS12725 | 2438408..2439292 | - | 885 | WP_001240582.1 | formate dehydrogenase N subunit beta | - |
| C1467_RS12730 | 2439305..2442352 | - | 3048 | WP_011310214.1 | formate dehydrogenase-N subunit alpha | - |
Domains
The domains were predicted by HMMER and were sorted by score.
Orphan Antitoxin
No domain identified.
Sequences
Orphan Antitoxin
Download Length: Molecular weight: 10401.08 Da Isoelectric Point: 8.8567
>WP_000781370.1 Orphan_TA_53 Antitoxin
MKMANHPRPGDIIQESLDELNVSLREFARAMEIAPSTASRLLTGKAALTPEMAIKLSVVI
GSSPQMWLNLQNAWSLAEAEKTVDVSRLRRLVTQ*
MKMANHPRPGDIIQESLDELNVSLREFARAMEIAPSTASRLLTGKAALTPEMAIKLSVVI
GSSPQMWLNLQNAWSLAEAEKTVDVSRLRRLVTQ*
Download Length: 285 bp
>WP_000781370.1 Orphan_TA_53 Antitoxin
ATGAAAATGGCCAATCATCCCCGCCCGGGGGACATTATTCAGGAATCACTGGACGAACTT
AATGTCAGCCTGCGCGAGTTTGCCAGAGCAATGGAAATTGCTCCCTCAACGGCAAGCCGA
TTGCTGACCGGAAAAGCAGCTTTGACACCAGAAATGGCGATTAAACTTTCCGTGGTGATC
GGCAGTTCGCCGCAAATGTGGCTGAATCTGCAAAACGCCTGGAGTCTGGCAGAGGCAGAA
AAAACGGTGGATGTGTCGCGACTACGCCGTCTGGTTACGCAATAA
ATGAAAATGGCCAATCATCCCCGCCCGGGGGACATTATTCAGGAATCACTGGACGAACTT
AATGTCAGCCTGCGCGAGTTTGCCAGAGCAATGGAAATTGCTCCCTCAACGGCAAGCCGA
TTGCTGACCGGAAAAGCAGCTTTGACACCAGAAATGGCGATTAAACTTTCCGTGGTGATC
GGCAGTTCGCCGCAAATGTGGCTGAATCTGCAAAACGCCTGGAGTCTGGCAGAGGCAGAA
AAAACGGTGGATGTGTCGCGACTACGCCGTCTGGTTACGCAATAA
Similar Proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| AT6146 | Proteus vulgaris |
39.535 |
82.692 |
0.358 |
| AT6083 | Pseudomonas putida KT2440 |
34.667 |
75.758 |
0.274 |
| AT6124 | Haemophilus influenzae 86-028NP |
32.895 |
71.028 |
0.263 |
| AT10161 | Pseudomonas aeruginosa PA14 strain MA3 isolate DTU_MIE |
35.616 |
72.277 |
0.274 |
| AT10032 | Pseudomonas aeruginosa PAO1 |
34.247 |
72.277 |
0.263 |
| AT171 | Vibrio cholerae O1 biovar El Tor str. N16961 |
35.294 |
64.762 |
0.253 |
| AT10133 | Acetobacter pasteurianus strain Ab3 |
29.73 |
20.442 |
0.232 |
| AT611 | Staphylococcus aureus subsp. aureus MW2 |
27.119 |
55.14 |
0.168 |