TAfinder detailed results
Overview
| Job ID | 9mizKMmBqU | ||
| Sequence name | Escherichia coli strain DH5alpha chromosome, complete genome. | ||
| Predicted type | II | ||
Orphan Antitoxin (Protein)
| Predicted family | relB (AT727) | Predicted domain | - |
| Locus tag | C1467_RS25205 | Length | 42 a.a. |
| Coordinates | 2304099..2304227 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| C1467_RS11960 | 2300013..2300264 | - | 252 | WP_000005552.1 | excisionase family protein | - |
| C1467_RS11965 | 2300337..2302814 | - | 2478 | WP_000048348.1 | exonuclease | - |
| C1467_RS11970 | 2302907..2303098 | - | 192 | WP_001083297.1 | lysis protein YdfD | - |
| C1467_RS11975 | 2303095..2303283 | - | 189 | WP_000854559.1 | cell division inhibition protein DicB | - |
| C1467_RS11985 | 2303851..2304069 | - | 219 | WP_001171942.1 | protein YdfC | - |
| C1467_RS25555 | 2304099..2304227 | - | 129 | WP_000344964.1 | protein YdfB | Antitoxin |
| C1467_RS11995 | 2304229..2304384 | - | 156 | WP_000379575.1 | DUF1391 family protein | - |
| C1467_RS12000 | 2304551..2304958 | - | 408 | WP_000448564.1 | DNA-binding transcriptional dual regulator DicA | - |
| C1467_RS12005 | 2305042..2305272 | + | 231 | WP_000920568.1 | dicB transcriptional regulator DicC | - |
| C1467_RS12010 | 2305256..2305777 | + | 522 | WP_000705358.1 | toxin YdaT family protein | - |
| C1467_RS12015 | 2305758..2306723 | + | 966 | WP_000054512.1 | hypothetical protein | - |
| C1467_RS12020 | 2306764..2307186 | + | 423 | WP_001151262.1 | DUF977 family protein | - |
| C1467_RS12025 | 2307183..2307672 | + | 489 | Protein_2212 | class I SAM-dependent methyltransferase | - |
| C1467_RS25205 | 2308150..2308571 | + | 420 | Protein_2213 | hypothetical protein | - |
Domains
The domains were predicted by HMMER and were sorted by score.
Orphan Antitoxin
No domain identified.
Sequences
Orphan Antitoxin
Download Length: Molecular weight: 4688.08 Da Isoelectric Point: 3.7704
>WP_000344964.1 Orphan_TA_48 Antitoxin
MDFDTIMEKAYEEYFEGLAEGEEALSFSEFKQALSSSAKSNG*
MDFDTIMEKAYEEYFEGLAEGEEALSFSEFKQALSSSAKSNG*
Download Length: 129 bp
>WP_000344964.1 Orphan_TA_48 Antitoxin
TCAGCCGTTAGATTTTGCCGAACTGGAAAGCGCCTGTTTAAACTCACTGAAGCTGAGAGC
TTCTTCGCCTTCGGCAAGGCCTTCGAAGTATTCTTCGTAAGCCTTTTCCATGATTGTGTC
GAAATCCAT
TCAGCCGTTAGATTTTGCCGAACTGGAAAGCGCCTGTTTAAACTCACTGAAGCTGAGAGC
TTCTTCGCCTTCGGCAAGGCCTTCGAAGTATTCTTCGTAAGCCTTTTCCATGATTGTGTC
GAAATCCAT
Similar Proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| AT727 | Streptococcus pneumoniae R6 |
40 |
31.25 |
0.233 |
| AT326 | Streptococcus pneumoniae TIGR4 |
40 |
31.25 |
0.233 |