TAfinder detailed results
Overview
| Job ID | 9mizKMmBqU | ||
| Sequence name | Escherichia coli strain DH5alpha chromosome, complete genome. | ||
| Predicted type | II | ||
Orphan Antitoxin (Protein)
| Predicted family | relB (AT6256) | Predicted domain | - |
| Locus tag | C1467_RS11900 | Length | 204 a.a. |
| Coordinates | 2286286..2286900 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| C1467_RS11865 | 2281814..2282707 | + | 894 | WP_001019544.1 | LysR family transcriptional regulator | - |
| C1467_RS11870 | 2282842..2284062 | + | 1221 | WP_000225276.1 | DNA-binding transcriptional repressor Mlc | - |
| C1467_RS11875 | 2284187..2284882 | + | 696 | WP_000919231.1 | dethiobiotin synthase | - |
| C1467_RS11880 | 2284835..2286127 | - | 1293 | WP_071524606.1 | voltage-gated ClC-type chloride channel ClcB | - |
| C1467_RS11885 | 2286286..2286900 | - | 615 | WP_000148710.1 | Tat proofreading chaperone DmsD | Antitoxin |
| C1467_RS11890 | 2286943..2287797 | - | 855 | WP_000526503.1 | dimethyl sulfoxide reductase anchor subunit family protein | - |
| C1467_RS11895 | 2287799..2288416 | - | 618 | WP_000213028.1 | dimethylsulfoxide reductase subunit B | - |
| C1467_RS11900 | 2288427..2290850 | - | 2424 | WP_001340362.1 | DmsA/YnfE/YnfF family dimethyl sulfoxide reductase | - |
Domains
The domains were predicted by HMMER and were sorted by score.
Orphan Antitoxin
No domain identified.
Sequences
Orphan Antitoxin
Download Length: Molecular weight: 23344.64 Da Isoelectric Point: 4.6364
>WP_000148710.1 Orphan_TA_46 Antitoxin
MTHFSQQDNFSVAARVLGALFYYAPESAEAAPLVAVLTSDGWETQWPLPEASLAPLVTAF
QTQCEETHAQAWQRLFVGPWALPSPPWGSVWLDRESVLFGDSTLALRQWMREKGIQFEMK
QNEPEDHFGSLLLMAAWLAENGRQTECEELLAWHLFPWSTRFLDVFIEKAEHPFYRALGE
LARLTLAQWQSQLLIPVAVKPLFR*
MTHFSQQDNFSVAARVLGALFYYAPESAEAAPLVAVLTSDGWETQWPLPEASLAPLVTAF
QTQCEETHAQAWQRLFVGPWALPSPPWGSVWLDRESVLFGDSTLALRQWMREKGIQFEMK
QNEPEDHFGSLLLMAAWLAENGRQTECEELLAWHLFPWSTRFLDVFIEKAEHPFYRALGE
LARLTLAQWQSQLLIPVAVKPLFR*
Download Length: 615 bp
>WP_000148710.1 Orphan_TA_46 Antitoxin
CTATCGAAACAGCGGTTTAACCGCGACAGGAATTAACAGTTGTGATTGCCATTGCGCCAG
CGTTAAGCGAGCCAGTTCACCCAGTGCACGGTAGAAAGGGTGTTCTGCTTTTTCGATAAA
AACATCAAGAAAACGTGTTGACCACGGAAAAAGGTGCCATGCCAGCAATTCTTCGCATTC
TGTCTGGCGACCATTTTCCGCCAACCACGCAGCCATCAACAGCAGTGAACCAAAATGATC
TTCCGGTTCGTTTTGCTTCATTTCAAACTGAATGCCTTTCTCGCGCATCCACTGACGAAG
TGCCAATGTTGAATCGCCAAACAGCACAGATTCGCGATCCAGCCAGACCGACCCCCACGG
CGGAGACGGCAGTGCCCACGGGCCGACAAACAAACGCTGCCAGGCCTGGGCGTGAGTCTC
TTCACACTGTGTCTGAAAAGCCGTCACCAGCGGCGCTAATGACGCTTCTGGTAGAGGCCA
CTGAGTTTCCCAGCCGTCACTGGTGAGTACCGCAACCAGAGGTGCGGCTTCCGCACTCTC
TGGAGCGTAATAAAACAGCGCGCCCAACACGCGCGCCGCGACAGAAAAATTATCTTGCTG
TGAAAAATGGGTCAT
CTATCGAAACAGCGGTTTAACCGCGACAGGAATTAACAGTTGTGATTGCCATTGCGCCAG
CGTTAAGCGAGCCAGTTCACCCAGTGCACGGTAGAAAGGGTGTTCTGCTTTTTCGATAAA
AACATCAAGAAAACGTGTTGACCACGGAAAAAGGTGCCATGCCAGCAATTCTTCGCATTC
TGTCTGGCGACCATTTTCCGCCAACCACGCAGCCATCAACAGCAGTGAACCAAAATGATC
TTCCGGTTCGTTTTGCTTCATTTCAAACTGAATGCCTTTCTCGCGCATCCACTGACGAAG
TGCCAATGTTGAATCGCCAAACAGCACAGATTCGCGATCCAGCCAGACCGACCCCCACGG
CGGAGACGGCAGTGCCCACGGGCCGACAAACAAACGCTGCCAGGCCTGGGCGTGAGTCTC
TTCACACTGTGTCTGAAAAGCCGTCACCAGCGGCGCTAATGACGCTTCTGGTAGAGGCCA
CTGAGTTTCCCAGCCGTCACTGGTGAGTACCGCAACCAGAGGTGCGGCTTCCGCACTCTC
TGGAGCGTAATAAAACAGCGCGCCCAACACGCGCGCCGCGACAGAAAAATTATCTTGCTG
TGAAAAATGGGTCAT
Similar Proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| AT6256 | Bifidobacterium longum subsp. infantis ATCC 15697 = JCM 1222 |
35.135 |
40.217 |
0.063 |