TAfinder detailed results
Overview
| Job ID | 9mizKMmBqU | ||
| Sequence name | Escherichia coli strain DH5alpha chromosome, complete genome. | ||
| Predicted type | II | ||
Orphan Antitoxin (Protein)
| Predicted family | vapB (AT6245) | Predicted domain | PF00440 (TetR_N) |
| Locus tag | C1467_RS11745 | Length | 196 a.a. |
| Coordinates | 2254357..2254947 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| C1467_RS11715 | 2250454..2252046 | - | 1593 | WP_000125609.1 | PTS maltose transporter subunit IICB | - |
| C1467_RS11720 | 2252221..2253249 | + | 1029 | WP_000179513.1 | mal regulon transcriptional regulator MalI | - |
| C1467_RS11725 | 2253361..2254128 | + | 768 | WP_000483360.1 | 7-alpha-hydroxysteroid dehydrogenase | - |
| C1467_RS11730 | 2254357..2254947 | + | 591 | WP_000969095.1 | DNA-binding transcriptional regulator UidR | Antitoxin |
| C1467_RS11735 | 2255335..2257146 | + | 1812 | WP_000945924.1 | beta-glucuronidase | - |
| C1467_RS11740 | 2257143..2258516 | + | 1374 | WP_001075858.1 | glucuronide transporter | - |
| C1467_RS11745 | 2258555..2259820 | + | 1266 | WP_001227032.1 | glucuronide uptake porin UidC | - |
Domains
The domains were predicted by HMMER and were sorted by score.
Orphan Antitoxin
No domain identified.
Sequences
Orphan Antitoxin
Download Length: Molecular weight: 21815.14 Da Isoelectric Point: 5.9324
>WP_000969095.1 Orphan_TA_45 Antitoxin
MMDNMQTEAQPTRTRILNAAREIFSENGFHSASMKAICKSCAISPGTLYHHFISKEALIQ
AIILQDQERALARFREPIEGIHFVDYMVESIVSLTHEAFGQRALVVEIMAEGMRNPQVAA
MLKNKHMTITEFVAQRMRDAQQKGEISPDINTSMTSRLLLDLTYGVLADIEAEDLAREAS
FAQGLRAMIGGILTAS*
MMDNMQTEAQPTRTRILNAAREIFSENGFHSASMKAICKSCAISPGTLYHHFISKEALIQ
AIILQDQERALARFREPIEGIHFVDYMVESIVSLTHEAFGQRALVVEIMAEGMRNPQVAA
MLKNKHMTITEFVAQRMRDAQQKGEISPDINTSMTSRLLLDLTYGVLADIEAEDLAREAS
FAQGLRAMIGGILTAS*
Download Length: 591 bp
>WP_000969095.1 Orphan_TA_45 Antitoxin
ATGATGGATAACATGCAGACTGAAGCACAACCGACACGGACCCGGATCCTCAATGCTGCC
AGAGAGATTTTTTCAGAAAATGGATTTCACAGTGCCTCGATGAAAGCCATCTGTAAATCC
TGCGCCATTAGTCCCGGGACGCTCTATCACCATTTCATCTCCAAAGAAGCCTTGATTCAG
GCGATTATCTTACAGGACCAGGAGAGGGCGCTGGCCCGTTTCCGGGAACCGATTGAAGGG
ATTCATTTTGTTGACTATATGGTCGAGTCTATTGTCTCTCTCACCCATGAAGCCTTTGGG
CAACGGGCGCTGGTGGTTGAAATTATGGCGGAAGGGATGCGTAACCCACAGGTCGCCGCC
ATGCTTAAAAATAAGCATATGACGATCACTGAATTTGTTGCCCAGCGGATGCGTGATGCC
CAGCAAAAAGGCGAGATAAGCCCAGACATCAACACGTCAATGACTTCACGTTTACTGCTG
GATCTGACCTACGGTGTACTGGCCGATATCGAAGCGGAAGACCTGGCGCGTGAAGCGTCG
TTTGCTCAGGGATTACGCGCGATGATTGGCGGTATCTTAACCGCATCCTGA
ATGATGGATAACATGCAGACTGAAGCACAACCGACACGGACCCGGATCCTCAATGCTGCC
AGAGAGATTTTTTCAGAAAATGGATTTCACAGTGCCTCGATGAAAGCCATCTGTAAATCC
TGCGCCATTAGTCCCGGGACGCTCTATCACCATTTCATCTCCAAAGAAGCCTTGATTCAG
GCGATTATCTTACAGGACCAGGAGAGGGCGCTGGCCCGTTTCCGGGAACCGATTGAAGGG
ATTCATTTTGTTGACTATATGGTCGAGTCTATTGTCTCTCTCACCCATGAAGCCTTTGGG
CAACGGGCGCTGGTGGTTGAAATTATGGCGGAAGGGATGCGTAACCCACAGGTCGCCGCC
ATGCTTAAAAATAAGCATATGACGATCACTGAATTTGTTGCCCAGCGGATGCGTGATGCC
CAGCAAAAAGGCGAGATAAGCCCAGACATCAACACGTCAATGACTTCACGTTTACTGCTG
GATCTGACCTACGGTGTACTGGCCGATATCGAAGCGGAAGACCTGGCGCGTGAAGCGTCG
TTTGCTCAGGGATTACGCGCGATGATTGGCGGTATCTTAACCGCATCCTGA
Similar Proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| AT6245 | Mycobacterium tuberculosis H37Rv |
34.568 |
19.951 |
0.142 |
| AT6245 | Mycobacterium tuberculosis H37Rv |
31.579 |
14.039 |
0.091 |