TAfinder detailed results
Overview
| Job ID | 9mizKMmBqU | ||
| Sequence name | Escherichia coli strain DH5alpha chromosome, complete genome. | ||
| Predicted type | II | ||
Orphan Antitoxin (Protein)
| Predicted family | vapB (AT950) | Predicted domain | - |
| Locus tag | C1467_RS10815 | Length | 115 a.a. |
| Coordinates | 2074269..2074616 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| C1467_RS10740 | 2069828..2070187 | + | 360 | WP_000939317.1 | DUF1971 domain-containing protein YeaR | - |
| C1467_RS10745 | 2070191..2070379 | + | 189 | WP_000513743.1 | DUF1869 domain-containing protein | - |
| C1467_RS10750 | 2070395..2070826 | - | 432 | WP_000604942.1 | IS200/IS605 family transposase | - |
| C1467_RS10755 | 2070834..2072042 | + | 1209 | WP_015695611.1 | RNA-guided endonuclease TnpB family protein | - |
| C1467_RS10760 | 2072270..2072518 | + | 249 | WP_000512153.1 | GlsB/YeaQ/YmgE family stress response membrane protein | - |
| C1467_RS10765 | 2072577..2072651 | - | 75 | WP_001386836.1 | protein YoaJ | - |
| C1467_RS10770 | 2072654..2072752 | - | 99 | WP_001219350.1 | YoaK family small membrane protein | - |
| C1467_RS10775 | 2072785..2073810 | - | 1026 | WP_001283455.1 | diguanylate cyclase DgcP | - |
| C1467_RS10780 | 2073993..2074247 | + | 255 | WP_000691903.1 | DUF333 domain-containing lipoprotein YoaF | - |
| C1467_RS10785 | 2074269..2074616 | - | 348 | WP_001297652.1 | DUF488 domain-containing protein | Antitoxin |
| C1467_RS10790 | 2074671..2075852 | - | 1182 | WP_000128477.1 | 2-nitroimidazole transporter | - |
| C1467_RS10795 | 2075949..2076770 | + | 822 | WP_000972232.1 | DNA-binding transcriptional regulator NimR | - |
| C1467_RS10800 | 2076727..2077173 | - | 447 | WP_000460707.1 | DUF441 domain-containing protein | - |
| C1467_RS10805 | 2077343..2077447 | + | 105 | WP_000999630.1 | small membrane protein YoaI | - |
| C1467_RS10810 | 2077448..2077951 | - | 504 | WP_000138052.1 | mischarged aminoacyl-tRNA deacylase | - |
| C1467_RS10815 | 2077994..2079484 | - | 1491 | WP_000766132.1 | diguanylate cyclase DgcJ | - |
Domains
The domains were predicted by HMMER and were sorted by score.
Orphan Antitoxin
No domain identified.
Sequences
Orphan Antitoxin
Download Length: Molecular weight: 13340.19 Da Isoelectric Point: 6.7213
>WP_001297652.1 Orphan_TA_40 Antitoxin
MNIQCKRVYDPAEQSDGYRVLVDRLWPRGIKKTDLALDEWDKEITPSTELRKAFHGEVVD
FATFREQYLAELAQHEQEGKRLADIAKKQPLTLLYAAKNTTQNHALVLADWLRSL*
MNIQCKRVYDPAEQSDGYRVLVDRLWPRGIKKTDLALDEWDKEITPSTELRKAFHGEVVD
FATFREQYLAELAQHEQEGKRLADIAKKQPLTLLYAAKNTTQNHALVLADWLRSL*
Download Length: 348 bp
>WP_001297652.1 Orphan_TA_40 Antitoxin
TCACAAGCTACGTAGCCAGTCGGCCAGCACCAGCGCATGGTTCTGCGTGGTGTTTTTTGC
TGCGTAGAGCAGGGTCAGCGGCTGTTTTTTGGCGATGTCCGCCAGCCGCTTTCCTTCTTG
CTCGTGTTGCGCCAGTTCTGCAAGATATTGCTCGCGAAAGGTTGCAAAATCGACGACTTC
GCCGTGAAAGGCTTTGCGCAGTTCCGTTGACGGCGTGATTTCTTTATCCCACTCATCAAG
GGCTAAATCGGTTTTTTTGATACCGCGCGGCCAGAGGCGGTCGACCAGTACGCGATAACC
ATCGCTCTGTTCAGCCGGATCATAAACGCGTTTGCACTGAATATTCAT
TCACAAGCTACGTAGCCAGTCGGCCAGCACCAGCGCATGGTTCTGCGTGGTGTTTTTTGC
TGCGTAGAGCAGGGTCAGCGGCTGTTTTTTGGCGATGTCCGCCAGCCGCTTTCCTTCTTG
CTCGTGTTGCGCCAGTTCTGCAAGATATTGCTCGCGAAAGGTTGCAAAATCGACGACTTC
GCCGTGAAAGGCTTTGCGCAGTTCCGTTGACGGCGTGATTTCTTTATCCCACTCATCAAG
GGCTAAATCGGTTTTTTTGATACCGCGCGGCCAGAGGCGGTCGACCAGTACGCGATAACC
ATCGCTCTGTTCAGCCGGATCATAAACGCGTTTGCACTGAATATTCAT
Similar Proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| AT950 | Sulfolobus solfataricus P2 |
45.455 |
95.652 |
0.431 |