TAfinder detailed results
Overview
| Job ID | 9mizKMmBqU | ||
| Sequence name | Escherichia coli strain DH5alpha chromosome, complete genome. | ||
| Predicted type | II | ||
Orphan Antitoxin (Protein)
| Predicted family | NpoA (AT10134) | Predicted domain | - |
| Locus tag | C1467_RS07110 | Length | 263 a.a. |
| Coordinates | 1374945..1375736 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| C1467_RS07070 | 1370162..1371466 | - | 1305 | WP_001315775.1 | penicillin binding protein PBP4B | - |
| C1467_RS07075 | 1371471..1372895 | - | 1425 | WP_001040482.1 | PTS N-acetylmuramic acid transporter subunit IIBC | - |
| C1467_RS07080 | 1372899..1373795 | - | 897 | WP_001175648.1 | N-acetylmuramic acid 6-phosphate etherase | - |
| C1467_RS07085 | 1373959..1374816 | + | 858 | WP_000966471.1 | HTH-type transcriptional regulator MurR | - |
| C1467_RS07090 | 1374945..1375736 | + | 792 | WP_000517443.1 | SDR family oxidoreductase UcpA | Antitoxin |
| C1467_RS07095 | 1375907..1376923 | + | 1017 | WP_000290231.1 | thiosulfate/sulfate ABC transporter substrate-binding protein CysP | - |
| C1467_RS07100 | 1376923..1377756 | + | 834 | WP_000458406.1 | sulfate/thiosulfate ABC transporter permease CysT | - |
| C1467_RS07105 | 1377756..1378631 | + | 876 | WP_000852685.1 | sulfate/thiosulfate ABC transporter permease CysW | - |
| C1467_RS07110 | 1378621..1379718 | + | 1098 | WP_000021040.1 | sulfate/thiosulfate ABC transporter ATP-binding protein CysA | - |
Domains
The domains were predicted by HMMER and were sorted by score.
Orphan Antitoxin
No domain identified.
Sequences
Orphan Antitoxin
Download Length: Molecular weight: 27864.00 Da Isoelectric Point: 4.8975
>WP_000517443.1 Orphan_TA_27 Antitoxin
MGKLTGKTALITGALQGIGEGIARTFARHGANLILLDISPEIEKLADELCGRGHRCTAVV
ADVRDPASVAAAIKRAKEKEGRIDILVNNAGVCRLGSFLDMSDEDRDFHIDINIKGVWNV
TKAVLPEMIARKDGRIVMMSSVTGDMVADPGETAYALTKAAIVGLTKSLAVEYAQSGIRV
NAICPGYVRTPMAESIARQSNPEDPESVLTEMAKAIPMRRLADPLEVGELAAFLASDESS
YLTGTQNVIDGGSTLPETVSVGI*
MGKLTGKTALITGALQGIGEGIARTFARHGANLILLDISPEIEKLADELCGRGHRCTAVV
ADVRDPASVAAAIKRAKEKEGRIDILVNNAGVCRLGSFLDMSDEDRDFHIDINIKGVWNV
TKAVLPEMIARKDGRIVMMSSVTGDMVADPGETAYALTKAAIVGLTKSLAVEYAQSGIRV
NAICPGYVRTPMAESIARQSNPEDPESVLTEMAKAIPMRRLADPLEVGELAAFLASDESS
YLTGTQNVIDGGSTLPETVSVGI*
Download Length: 792 bp
>WP_000517443.1 Orphan_TA_27 Antitoxin
ATGGGTAAACTCACGGGCAAGACAGCACTGATTACGGGCGCATTGCAGGGAATTGGCGAA
GGAATTGCCAGAACTTTTGCGCGTCATGGCGCAAACCTAATCTTGCTGGATATCTCCCCT
GAGATCGAAAAGCTGGCGGACGAACTGTGTGGTCGTGGTCATCGCTGTACGGCGGTTGTC
GCCGATGTGCGTGACCCGGCGTCGGTAGCCGCAGCTATCAAACGCGCGAAGGAAAAAGAA
GGGCGCATTGATATCCTGGTGAATAACGCAGGCGTTTGTCGTCTGGGCAGTTTCCTCGAT
ATGAGCGATGAAGATCGCGATTTCCATATTGACATCAATATTAAAGGCGTATGGAACGTC
ACGAAGGCGGTGCTGCCAGAGATGATTGCGCGCAAAGATGGTCGCATTGTGATGATGTCT
TCAGTCACTGGTGATATGGTGGCCGATCCTGGCGAAACGGCGTACGCCTTAACGAAAGCG
GCGATTGTTGGCCTGACAAAATCGCTGGCGGTGGAGTACGCGCAGTCTGGTATTCGCGTT
AACGCCATTTGCCCGGGATACGTGCGCACACCAATGGCGGAAAGCATTGCCCGCCAGTCG
AACCCGGAAGATCCAGAGTCGGTGCTGACTGAAATGGCGAAAGCAATCCCGATGCGTCGC
CTCGCCGATCCGCTGGAAGTCGGCGAACTGGCGGCCTTCCTCGCATCGGATGAATCCAGC
TATTTAACCGGTACACAGAATGTGATTGATGGCGGCAGCACACTGCCGGAGACGGTTAGC
GTCGGTATCTGA
ATGGGTAAACTCACGGGCAAGACAGCACTGATTACGGGCGCATTGCAGGGAATTGGCGAA
GGAATTGCCAGAACTTTTGCGCGTCATGGCGCAAACCTAATCTTGCTGGATATCTCCCCT
GAGATCGAAAAGCTGGCGGACGAACTGTGTGGTCGTGGTCATCGCTGTACGGCGGTTGTC
GCCGATGTGCGTGACCCGGCGTCGGTAGCCGCAGCTATCAAACGCGCGAAGGAAAAAGAA
GGGCGCATTGATATCCTGGTGAATAACGCAGGCGTTTGTCGTCTGGGCAGTTTCCTCGAT
ATGAGCGATGAAGATCGCGATTTCCATATTGACATCAATATTAAAGGCGTATGGAACGTC
ACGAAGGCGGTGCTGCCAGAGATGATTGCGCGCAAAGATGGTCGCATTGTGATGATGTCT
TCAGTCACTGGTGATATGGTGGCCGATCCTGGCGAAACGGCGTACGCCTTAACGAAAGCG
GCGATTGTTGGCCTGACAAAATCGCTGGCGGTGGAGTACGCGCAGTCTGGTATTCGCGTT
AACGCCATTTGCCCGGGATACGTGCGCACACCAATGGCGGAAAGCATTGCCCGCCAGTCG
AACCCGGAAGATCCAGAGTCGGTGCTGACTGAAATGGCGAAAGCAATCCCGATGCGTCGC
CTCGCCGATCCGCTGGAAGTCGGCGAACTGGCGGCCTTCCTCGCATCGGATGAATCCAGC
TATTTAACCGGTACACAGAATGTGATTGATGGCGGCAGCACACTGCCGGAGACGGTTAGC
GTCGGTATCTGA
Similar Proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| AT10134 | Acetobacter pasteurianus strain Ab3 |
31.907 |
90.493 |
0.311 |