TAfinder detailed results
Overview
| Job ID | 9mizKMmBqU | ||
| Sequence name | Escherichia coli strain DH5alpha chromosome, complete genome. | ||
| Predicted type | II | ||
Orphan Antitoxin (Protein)
| Predicted family | - (AT183) | Predicted domain | - |
| Locus tag | C1467_RS03905 | Length | 299 a.a. |
| Coordinates | 736005..736904 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| C1467_RS03855 | 732282..732539 | - | 258 | WP_000848540.1 | lipoprotein YqhH | - |
| C1467_RS03860 | 732590..733516 | - | 927 | WP_000691598.1 | YbjP/YqhG family protein | - |
| C1467_RS03865 | 733716..734543 | - | 828 | WP_000013149.1 | 2,5-didehydrogluconate reductase DkgA | - |
| C1467_RS03870 | 734648..735811 | - | 1164 | WP_001058813.1 | alcohol dehydrogenase | - |
| C1467_RS03875 | 736005..736904 | + | 900 | WP_000817717.1 | DNA-binding transcriptional regulator YqhC | Antitoxin |
| C1467_RS03880 | 736944..737603 | - | 660 | WP_000268419.1 | DedA family general envelope maintenance protein YghB | - |
| C1467_RS03885 | 737743..738930 | - | 1188 | WP_000763933.1 | cystathionine beta-lyase | - |
| C1467_RS03895 | 739181..739915 | + | 735 | WP_000527844.1 | tol-pal system-associated acyl-CoA thioesterase | - |
| C1467_RS03900 | 739922..740347 | + | 426 | WP_001240712.1 | TonB system transport protein ExbD | - |
| C1467_RS03905 | 740619..741503 | - | 885 | WP_000018760.1 | NADP(+)-dependent aldehyde reductase | - |
Domains
The domains were predicted by HMMER and were sorted by score.
Orphan Antitoxin
No domain identified.
Sequences
Orphan Antitoxin
Download Length: Molecular weight: 33814.18 Da Isoelectric Point: 7.0954
>WP_000817717.1 Orphan_TA_16 Antitoxin
MKREEICRLLADKVNKLKIKENSLSELLPDVRLLYGETPFARTPVMYEPGIIILFSGHKI
GYINERVFRYDANEYLLLTVPLPFECETYATSEVPLAGLRLNVDILQLQELLMDIGEDEH
FQPSMAASGINSATLSEEILCAAERLLDVMERPLDARILGKQIIREILYYVLTGPCGGAL
LALVSRQTHFSLISRVLKRIENKYTENLSVEQLAAEANMSVSAFHHNFKSVTSTSPLQYL
KNYRLHKARMMIIHDGMKASAAAMRVGYESASQFSREFKRYFGVTPGEDAARMRAMQGN*
MKREEICRLLADKVNKLKIKENSLSELLPDVRLLYGETPFARTPVMYEPGIIILFSGHKI
GYINERVFRYDANEYLLLTVPLPFECETYATSEVPLAGLRLNVDILQLQELLMDIGEDEH
FQPSMAASGINSATLSEEILCAAERLLDVMERPLDARILGKQIIREILYYVLTGPCGGAL
LALVSRQTHFSLISRVLKRIENKYTENLSVEQLAAEANMSVSAFHHNFKSVTSTSPLQYL
KNYRLHKARMMIIHDGMKASAAAMRVGYESASQFSREFKRYFGVTPGEDAARMRAMQGN*
Download Length: 900 bp
>WP_000817717.1 Orphan_TA_16 Antitoxin
ATGAAACGTGAAGAGATTTGCCGCTTGCTGGCGGATAAAGTTAATAAACTGAAAATTAAA
GAAAATAGTTTGTCAGAACTGTTGCCCGATGTGCGTTTGTTGTATGGCGAGACGCCTTTC
GCACGTACACCGGTGATGTACGAGCCTGGCATCATAATTCTCTTTTCCGGGCATAAAATC
GGTTATATCAATGAACGCGTGTTTCGTTATGATGCCAATGAATACCTGCTGCTGACGGTG
CCGTTGCCGTTTGAGTGCGAAACCTATGCCACGTCAGAGGTGCCGCTGGCAGGGTTGCGT
CTCAATGTCGATATTTTGCAGTTACAGGAACTGTTGATGGACATTGGCGAAGATGAGCAT
TTCCAGCCGTCGATGGCAGCCAGCGGGATTAACTCCGCCACGTTATCAGAAGAGATTTTA
TGCGCGGCGGAGCGGTTACTCGACGTGATGGAGCGACCACTGGATGCGCGTATTCTCGGC
AAACAGATCATCCGCGAAATTCTGTACTACGTGCTGACCGGACCTTGCGGCGGCGCGTTA
CTGGCGCTGGTCAGTCGCCAGACTCACTTCAGTCTGATTAGCCGCGTGCTGAAACGGATT
GAGAATAAATACACCGAAAACCTGAGCGTCGAGCAACTGGCGGCAGAAGCCAACATGAGC
GTATCGGCGTTCCACCATAATTTTAAGTCTGTCACCAGCACCTCGCCGTTGCAGTATTTG
AAGAATTACCGTCTGCATAAGGCGCGGATGATGATCATCCATGACGGCATGAAGGCTAGC
GCAGCAGCGATGCGCGTCGGCTATGAAAGCGCATCGCAATTTAGCCGTGAGTTTAAACGT
TACTTCGGTGTGACGCCGGGGGAAGATGCGGCAAGAATGCGGGCGATGCAGGGGAATTAA
ATGAAACGTGAAGAGATTTGCCGCTTGCTGGCGGATAAAGTTAATAAACTGAAAATTAAA
GAAAATAGTTTGTCAGAACTGTTGCCCGATGTGCGTTTGTTGTATGGCGAGACGCCTTTC
GCACGTACACCGGTGATGTACGAGCCTGGCATCATAATTCTCTTTTCCGGGCATAAAATC
GGTTATATCAATGAACGCGTGTTTCGTTATGATGCCAATGAATACCTGCTGCTGACGGTG
CCGTTGCCGTTTGAGTGCGAAACCTATGCCACGTCAGAGGTGCCGCTGGCAGGGTTGCGT
CTCAATGTCGATATTTTGCAGTTACAGGAACTGTTGATGGACATTGGCGAAGATGAGCAT
TTCCAGCCGTCGATGGCAGCCAGCGGGATTAACTCCGCCACGTTATCAGAAGAGATTTTA
TGCGCGGCGGAGCGGTTACTCGACGTGATGGAGCGACCACTGGATGCGCGTATTCTCGGC
AAACAGATCATCCGCGAAATTCTGTACTACGTGCTGACCGGACCTTGCGGCGGCGCGTTA
CTGGCGCTGGTCAGTCGCCAGACTCACTTCAGTCTGATTAGCCGCGTGCTGAAACGGATT
GAGAATAAATACACCGAAAACCTGAGCGTCGAGCAACTGGCGGCAGAAGCCAACATGAGC
GTATCGGCGTTCCACCATAATTTTAAGTCTGTCACCAGCACCTCGCCGTTGCAGTATTTG
AAGAATTACCGTCTGCATAAGGCGCGGATGATGATCATCCATGACGGCATGAAGGCTAGC
GCAGCAGCGATGCGCGTCGGCTATGAAAGCGCATCGCAATTTAGCCGTGAGTTTAAACGT
TACTTCGGTGTGACGCCGGGGGAAGATGCGGCAAGAATGCGGGCGATGCAGGGGAATTAA
Similar Proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| AT183 | Pseudomonas aeruginosa PAO1 |
30.208 |
33.803 |
0.097 |