TAfinder detailed results
Overview
| Job ID | 9mizKMmBqU | ||
| Sequence name | Escherichia coli strain DH5alpha chromosome, complete genome. | ||
| Predicted type | II | ||
Orphan Toxin (Protein)
| Predicted family | vapC (T843) | Predicted domain | - |
| Locus tag | C1467_RS24275 | Length | 266 a.a. |
| Coordinates | 4703545..4704345 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| C1467_RS24240 | 4699345..4701606 | - | 2262 | WP_000153973.1 | 5-methyltetrahydropteroyltriglutamate-- homocysteine S-methyltransferase | - |
| C1467_RS24245 | 4701729..4702682 | + | 954 | WP_000573618.1 | HTH-type transcriptional regulator MetR | - |
| C1467_RS24250 | 4702570..4703469 | - | 900 | WP_001196238.1 | biotin transporter | - |
| C1467_RS24255 | 4703545..4704345 | - | 801 | WP_000285352.1 | sugar/pyridoxal phosphate phosphatase YigL | Toxin |
| C1467_RS24260 | 4704353..4705375 | - | 1023 | WP_000487654.1 | lysophospholipase L2 | - |
| C1467_RS24265 | 4705486..4706106 | + | 621 | WP_000171710.1 | homoserine/homoserine lactone efflux protein | - |
| C1467_RS24270 | 4706168..4706788 | - | 621 | WP_000928824.1 | threonine export protein RhtC | - |
| C1467_RS24275 | 4706852..4708681 | - | 1830 | WP_001346040.1 | ATP-dependent DNA helicase RecQ | - |
Domains
The domains were predicted by HMMER and were sorted by score.
Orphan Toxin
No domain identified.
Sequences
Orphan Toxin
Download Length: Molecular weight: 29707.77 Da Isoelectric Point: 5.3280
>WP_000285352.1 Orphan_TA_110 Toxin
MYQVVASDLDGTLLSPDHTLSPYAKETLKLLTARGINFVFATGRHHVDVGQIRDNLEIKS
YMITSNGARVHDLDGNLIFAHNLDRDIASDLFGVVNDNPDIITNVYRDDEWFMNRHRPEE
MRFFKEAVFKYALYEPGLLEPEGVSKVFFTCDSHEQLLPLEQAINARWGDRVNVSFSTLT
CLEVMAGGVSKGHALEAVAKKLGYSLKDCIAFGDGMNDAEMLSMAGKGCIMGSAHQRLKD
LHPELEVIGTNADDAVPHYLRKLYLS*
MYQVVASDLDGTLLSPDHTLSPYAKETLKLLTARGINFVFATGRHHVDVGQIRDNLEIKS
YMITSNGARVHDLDGNLIFAHNLDRDIASDLFGVVNDNPDIITNVYRDDEWFMNRHRPEE
MRFFKEAVFKYALYEPGLLEPEGVSKVFFTCDSHEQLLPLEQAINARWGDRVNVSFSTLT
CLEVMAGGVSKGHALEAVAKKLGYSLKDCIAFGDGMNDAEMLSMAGKGCIMGSAHQRLKD
LHPELEVIGTNADDAVPHYLRKLYLS*
Download Length: 801 bp
>WP_000285352.1 Orphan_TA_110 Toxin
TTACGATAAATAGAGTTTACGCAGATAATGCGGCACCGCGTCGTCGGCATTAGTACCAAT
CACTTCCAGCTCGGGATGAAGGTCTTTCAGACGCTGGTGCGCACTGCCCATAATGCAGCC
TTTCCCCGCCATCGACAGCATTTCGGCGTCGTTCATCCCGTCACCAAACGCAATACAATC
CTTCAGGCTGTAGCCCAGTTTCTTCGCCACTGCTTCCAGCGCATGGCCTTTCGACACGCC
GCCCGCCATCACTTCCAGACAGGTTAAGGTAGAGAAACTGACGTTGACGCGATCGCCCCA
GCGAGCGTTAATCGCCTGCTCCAGCGGCAGCAGTTGTTCATGGGAATCGCAGGTGAAAAA
CACTTTGCTGACGCCTTCCGGCTCCAGTAATCCAGGCTCATACAGCGCATATTTGAACAC
CGCTTCTTTAAAAAAGCGCATCTCTTCCGGGCGATGGCGATTCATAAACCATTCGTCGTC
GCGATAAACGTTAGTAATGATGTCCGGATTGTCGTTGACTACGCCAAACAGATCGCTGGC
AATGTCGCGATCCAGGTTATGAGCAAAAATCAGATTACCATCCAGATCGTGAACGCGCGC
ACCATTGGAGGTAATCATGTAAGACTTAATCTCCAGATTATCGCGAATTTGCCCCACATC
AACGTGGTGACGACCGGTCGCAAACACAAAGTTGATGCCGCGCGCGGTGAGCAGCTTCAG
AGTTTCTTTGGCGTAAGGGGATAACGTATGGTCGGGAGAAAGTAACGTGCCATCTAAATC
AGACGCAACAACCTGGTACAT
TTACGATAAATAGAGTTTACGCAGATAATGCGGCACCGCGTCGTCGGCATTAGTACCAAT
CACTTCCAGCTCGGGATGAAGGTCTTTCAGACGCTGGTGCGCACTGCCCATAATGCAGCC
TTTCCCCGCCATCGACAGCATTTCGGCGTCGTTCATCCCGTCACCAAACGCAATACAATC
CTTCAGGCTGTAGCCCAGTTTCTTCGCCACTGCTTCCAGCGCATGGCCTTTCGACACGCC
GCCCGCCATCACTTCCAGACAGGTTAAGGTAGAGAAACTGACGTTGACGCGATCGCCCCA
GCGAGCGTTAATCGCCTGCTCCAGCGGCAGCAGTTGTTCATGGGAATCGCAGGTGAAAAA
CACTTTGCTGACGCCTTCCGGCTCCAGTAATCCAGGCTCATACAGCGCATATTTGAACAC
CGCTTCTTTAAAAAAGCGCATCTCTTCCGGGCGATGGCGATTCATAAACCATTCGTCGTC
GCGATAAACGTTAGTAATGATGTCCGGATTGTCGTTGACTACGCCAAACAGATCGCTGGC
AATGTCGCGATCCAGGTTATGAGCAAAAATCAGATTACCATCCAGATCGTGAACGCGCGC
ACCATTGGAGGTAATCATGTAAGACTTAATCTCCAGATTATCGCGAATTTGCCCCACATC
AACGTGGTGACGACCGGTCGCAAACACAAAGTTGATGCCGCGCGCGGTGAGCAGCTTCAG
AGTTTCTTTGGCGTAAGGGGATAACGTATGGTCGGGAGAAAGTAACGTGCCATCTAAATC
AGACGCAACAACCTGGTACAT
Similar Proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| T843 | Bradyrhizobium diazoefficiens USDA 110 |
30.645 |
43.972 |
0.071 |