TAfinder detailed results
Overview
| Job ID | 9mizKMmBqU | ||
| Sequence name | Escherichia coli strain DH5alpha chromosome, complete genome. | ||
| Predicted type | II | ||
Orphan Antitoxin (Protein)
| Predicted family | tsbA (AT10115) | Predicted domain | - |
| Locus tag | C1467_RS03185 | Length | 251 a.a. |
| Coordinates | 600431..601186 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| C1467_RS03145 | 596126..598642 | - | 2517 | WP_001136449.1 | fimbria/pilus outer membrane usher protein | - |
| C1467_RS03150 | 598672..599367 | - | 696 | WP_000044768.1 | molecular chaperone | - |
| C1467_RS03155 | 599447..600031 | - | 585 | WP_001045442.1 | fimbrial protein | - |
| C1467_RS03160 | 600431..601186 | - | 756 | WP_001307409.1 | galactosamine-6-phosphate isomerase | Antitoxin |
| C1467_RS03165 | 601187..601978 | - | 792 | WP_000534351.1 | PTS galactosamine transporter subunit IID | - |
| C1467_RS03170 | 601968..602771 | - | 804 | WP_000544489.1 | PTS galactosamine transporter subunit IIC | - |
| C1467_RS03175 | 602810..603286 | - | 477 | WP_000098022.1 | PTS galactosamine transporter subunit IIB | - |
| C1467_RS03180 | 603453..604313 | - | 861 | WP_000022766.1 | tagatose-bisphosphate aldolase subunit KbaY | - |
| C1467_RS03185 | 604326..605480 | - | 1155 | WP_001114869.1 | AgaS family sugar isomerase | - |
Domains
The domains were predicted by HMMER and were sorted by score.
Orphan Antitoxin
No domain identified.
Sequences
Orphan Antitoxin
Download Length: Molecular weight: 27782.91 Da Isoelectric Point: 5.8385
>WP_001307409.1 Orphan_TA_11 Antitoxin
MERGTASGGASLLKEFHPVQTLQQVENYTALSERASEYLLAVIRSKPDAVICLATGATPL
LTYHYLVEKIHQQQVDISQLTFVKLDEWVDLPLTMPGTCETFLQQHIVQPLGLREDQLIS
FRSEEINETECERVTNLIARKGGLDLCVLGLGKNGHLGLNEPGESLQPACHISQLDARTQ
QHEMLKTTGRPVTRGITLGLKDILNAREVLLLVTGEGKQDATERFLTAKVSTAIPASFLW
LHSNFICLINT*
MERGTASGGASLLKEFHPVQTLQQVENYTALSERASEYLLAVIRSKPDAVICLATGATPL
LTYHYLVEKIHQQQVDISQLTFVKLDEWVDLPLTMPGTCETFLQQHIVQPLGLREDQLIS
FRSEEINETECERVTNLIARKGGLDLCVLGLGKNGHLGLNEPGESLQPACHISQLDARTQ
QHEMLKTTGRPVTRGITLGLKDILNAREVLLLVTGEGKQDATERFLTAKVSTAIPASFLW
LHSNFICLINT*
Download Length: 756 bp
>WP_001307409.1 Orphan_TA_11 Antitoxin
TTAGGTATTAATTAAACAAATAAAGTTACTGTGCAGCCATAAAAACGAAGCCGGGATAGC
GGTGGAGACTTTAGCCGTGAGAAAACGTTCTGTCGCATCCTGCTTTCCTTCGCCAGTCAC
CAATAACAAAACCTCGCGGGCATTGAGAATATCCTTCAGGCCTAAGGTGATCCCACGAGT
CACGGGGCGACCCGTGGTTTTTAACATCTCATGTTGCTGTGTTCTGGCATCAAGTTGACT
GATATGGCAGGCCGGTTGTAGGCTTTCTCCCGGTTCGTTCAGCCCAAGATGACCGTTTTT
CCCCAATCCTAGAACGCATAAATCCAGACCGCCTTTGCGCGCAATCAGGTTCGTTACCCG
TTCGCACTCTGTCTCATTTATCTCTTCGGAGCGAAAGCTGATGAGCTGGTCTTCACGCAG
CCCCAGCGGCTGCACGATATGCTGTTGTAGGAAAGTTTCGCAGGTGCCAGGCATCGTTAA
TGGCAGATCCACCCATTCGTCGAGCTTCACGAAGGTGAGCTGGCTGATATCAACCTGCTG
CTGGTGGATTTTTTCTACCAGATAATGATACGTCAGTAATGGCGTGGCTCCGGTCGCCAG
GCAAATCACGGCATCCGGTTTGCTACGGATCACAGCCAATAAATATTCGCTGGCTCGTTC
ACTTAACGCCGTATAGTTTTCAACTTGCTGAAGGGTTTGCACAGGATGAAATTCCTTAAG
TAAAGAGGCACCGCCAGAAGCAGTGCCTCGTTCCAT
TTAGGTATTAATTAAACAAATAAAGTTACTGTGCAGCCATAAAAACGAAGCCGGGATAGC
GGTGGAGACTTTAGCCGTGAGAAAACGTTCTGTCGCATCCTGCTTTCCTTCGCCAGTCAC
CAATAACAAAACCTCGCGGGCATTGAGAATATCCTTCAGGCCTAAGGTGATCCCACGAGT
CACGGGGCGACCCGTGGTTTTTAACATCTCATGTTGCTGTGTTCTGGCATCAAGTTGACT
GATATGGCAGGCCGGTTGTAGGCTTTCTCCCGGTTCGTTCAGCCCAAGATGACCGTTTTT
CCCCAATCCTAGAACGCATAAATCCAGACCGCCTTTGCGCGCAATCAGGTTCGTTACCCG
TTCGCACTCTGTCTCATTTATCTCTTCGGAGCGAAAGCTGATGAGCTGGTCTTCACGCAG
CCCCAGCGGCTGCACGATATGCTGTTGTAGGAAAGTTTCGCAGGTGCCAGGCATCGTTAA
TGGCAGATCCACCCATTCGTCGAGCTTCACGAAGGTGAGCTGGCTGATATCAACCTGCTG
CTGGTGGATTTTTTCTACCAGATAATGATACGTCAGTAATGGCGTGGCTCCGGTCGCCAG
GCAAATCACGGCATCCGGTTTGCTACGGATCACAGCCAATAAATATTCGCTGGCTCGTTC
ACTTAACGCCGTATAGTTTTCAACTTGCTGAAGGGTTTGCACAGGATGAAATTCCTTAAG
TAAAGAGGCACCGCCAGAAGCAGTGCCTCGTTCCAT
Similar Proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| AT10115 | Staphylococcus aureus subsp. aureus N315 |
32.5 |
20.101 |
0.052 |
| AT10040 | Staphylococcus aureus subsp. aureus N315 |
32.5 |
20.101 |
0.052 |