TAfinder detailed results

Overview

Job ID 9mizKMmBqU
Sequence name Escherichia coli strain DH5alpha chromosome, complete genome.
Predicted type II

Orphan Antitoxin (Protein)


Predicted family vapB (AT4250) Predicted domain COG3905 (RHH)
Locus tag C1467_RS23950 Length 72 a.a.
Coordinates 4633962..4634180 (-)

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
C1467_RS23885 4629373..4630275 + 903 WP_000331377.1 formate dehydrogenase O subunit beta -
C1467_RS23890 4630272..4630907 + 636 WP_000829013.1 formate dehydrogenase cytochrome b556 subunit -
C1467_RS23895 4630904..4631833 + 930 WP_000027702.1 formate dehydrogenase accessory protein FdhE -
C1467_RS23900 4632196..4633404 - 1209 WP_006250222.1 IS4-like element ISVsa5 family transposase -
C1467_RS23910 4633474..4633743 - 270 WP_158649079.1 hypothetical protein -
C1467_RS23915 4633962..4634180 - 219 WP_001295676.1 CopG family transcriptional regulator Antitoxin
C1467_RS23925 4634785..4635075 - 291 WP_000356397.1 NadS family protein -
C1467_RS23930 4635076..4635387 - 312 WP_000897305.1 hypothetical protein -
C1467_RS23935 4635616..4636524 + 909 WP_001162704.1 alpha/beta hydrolase -
C1467_RS23940 4636588..4637529 - 942 WP_001297068.1 fatty acid biosynthesis protein FabY -
C1467_RS23945 4637574..4638011 - 438 WP_000560983.1 D-aminoacyl-tRNA deacylase -
C1467_RS23950 4638008..4638880 - 873 WP_000920762.1 virulence factor BrkB family protein -

Domains

The domains were predicted by HMMER and were sorted by score.

Orphan Antitoxin


No domain identified.



Sequences

Orphan Antitoxin        


Download         Length:         Molecular weight: 8407.73 Da        Isoelectric Point: 10.6107

>WP_001295676.1 Orphan_TA_109 Antitoxin
MAMNTVFLHLSEEAIKRLNKLRGWRKVSRSAILREAVEQYLERQQFPVRKAKGGRQKGEV
VGVDDQCKEHKE*

Download         Length: 219 bp

>WP_001295676.1 Orphan_TA_109 Antitoxin
TCATTCCTTATGCTCCTTACACTGATCATCAACACCAACTACCTCCCCCTTTTGCCTGCC
TCCCTTTGCTTTACGCACCGGAAATTGCTGCCGCTCCAGATATTGCTCAACCGCTTCGCG
TAAAATTGCAGATCGTGAAACCTTACGCCAGCCCCGAAGTTTGTTCAGCCGTTTAATTGC
CTCTTCTGATAAATGAAGAAAAACCGTATTCATCGCCAT

Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
AT4250 Klebsiella pneumoniae subsp. pneumoniae MGH 78578

50

52.5

0.288
AT180 Pseudomonas aeruginosa PAO1

35.849

70.667

0.26
AT6134 Paracoccus aminophilus

30

45.977

0.164
AT309 Pseudomonas putida KT2440

41.379

32.222

0.164