MGE detailed information
MGE type: Genomic_island MGE length: 40951 bp
Accession: NZ_LT992488 Location: 2151121..2192071 Organism: Vibrio cholerae strain 4295STDY6534232 Replicon: chromosome
Accession: NZ_LT992488 Location: 2151121..2192071 Organism: Vibrio cholerae strain 4295STDY6534232 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| DG176_RS10150 () | 2146386..2150948 | - | 4563 | WP_000702220.1 | accessory colonization factor AcfD | - |
| DG176_RS10155 () | 2151121..2151768 | + | 648 | WP_001173022.1 | accessory colonization factor AcfA | - |
| DG176_RS10160 () | 2151771..2152679 | - | 909 | WP_001880634.1 | M23 family metallopeptidase | - |
| DG176_RS10165 () | 2152688..2153161 | - | 474 | WP_053029780.1 | RDD family protein | - |
| DG176_RS10170 () | 2153177..2153947 | - | 771 | WP_001880633.1 | accessory colonization factor AcfC | - |
| DG176_RS10175 () | 2153953..2155833 | - | 1881 | WP_000672505.1 | methyl-accepting chemotaxis protein AcfB | - |
| DG176_RS10180 () | 2155840..2156601 | - | 762 | WP_000456980.1 | toxin-coregulated pilus pre-pilin peptidase TcpJ | - |
| DG176_RS10185 () | 2156601..2157431 | - | 831 | WP_000579582.1 | pilus/toxin transcriptional regulator ToxT | - |
| DG176_RS10190 () | 2157638..2158654 | - | 1017 | WP_001269573.1 | colonization factor TcpF | - |
| DG176_RS10195 () | 2158664..2159686 | - | 1023 | WP_000691946.1 | toxin-coregulated pilus assembly protein TcpE | - |
| DG176_RS10200 () | 2159661..2161172 | - | 1512 | WP_000020697.1 | toxin-coregulated pilus assembly ATPase TcpT | - |
| DG176_RS10205 () | 2161162..2161620 | - | 459 | WP_001022338.1 | toxin-coregulated pilus protein TcpS | - |
| DG176_RS10210 () | 2161636..2162472 | - | 837 | WP_001880631.1 | toxin-coregulated pilus protein TcpD | - |
| DG176_RS10215 () | 2162460..2162915 | - | 456 | WP_000200904.1 | toxin-coregulated pilus protein TcpR | - |
| DG176_RS10220 () | 2162908..2164377 | - | 1470 | WP_000750979.1 | toxin-coregulated pilus secretin TcpC | - |
| DG176_RS10225 () | 2164380..2164832 | - | 453 | WP_000742753.1 | toxin-coregulated pilus protein TcpQ | - |
| DG176_RS10230 () | 2164832..2166124 | - | 1293 | WP_001234004.1 | toxin-coregulated pilus minor pilin TcpB | - |
| DG176_RS10235 () | 2166204..2166878 | - | 675 | WP_050926100.1 | toxin-coregulated pilus major pilin TcpA | - |
| DG176_RS10240 () | 2167421..2167831 | - | 411 | WP_000549073.1 | toxin-coregulated pilus protein TcpH | - |
| DG176_RS10245 () | 2167816..2168481 | - | 666 | WP_000542596.1 | toxin-coregulated pilus transcriptional regulator TcpP | - |
| DG176_RS10250 () | 2168922..2170784 | + | 1863 | WP_000591844.1 | toxin-coregulated pilus methyl-accepting chemotaxis protein TcpI | - |
| DG176_RS10255 () | 2171060..2171554 | - | 495 | WP_000218964.1 | thiol peroxidase | - |
| DG176_RS10260 () | 2171664..2172602 | - | 939 | WP_001232137.1 | hypothetical protein | - |
| DG176_RS10265 () | 2172599..2177200 | - | 4602 | WP_000482254.1 | membrane protein | - |
| DG176_RS10270 () | 2177313..2180354 | - | 3042 | WP_001880619.1 | fibronectin type III domain-containing protein | - |
| DG176_RS10275 () | 2180534..2182054 | + | 1521 | WP_000640055.1 | aldehyde dehydrogenase | - |
| DG176_RS10280 () | 2182396..2183076 | + | 681 | Protein_1920 | IS5 family transposase | - |
| DG176_RS10285 () | 2183102..2184079 | - | 978 | WP_001889101.1 | IS481-like element ISVch1 family transposase | - |
| DG176_RS10295 () | 2184683..2186044 | + | 1362 | WP_000392003.1 | type II toxin-antitoxin system HipA family toxin | Toxin Detail |
| DG176_RS10300 () | 2186041..2186508 | + | 468 | WP_000804849.1 | helix-turn-helix domain-containing protein | Antitoxin Detail |
| DG176_RS10305 () | 2186936..2187514 | + | 579 | WP_000109982.1 | class I SAM-dependent methyltransferase | - |
| DG176_RS10310 () | 2187518..2190454 | + | 2937 | WP_001283872.1 | DEAD/DEAH box helicase family protein | - |
| DG176_RS10315 () | 2190524..2191228 | + | 705 | WP_001880605.1 | NERD domain-containing protein | - |
| DG176_RS10320 () | 2191562..2192071 | - | 510 | WP_001077909.1 | hypothetical protein | - |
| DG176_RS10325 () | 2192269..2193948 | - | 1680 | WP_001139117.1 | SWIM zinc finger domain-containing protein | - |
| DG176_RS10335 () | 2194171..2194854 | + | 684 | WP_000841479.1 | MFS transporter | - |
| DG176_RS10340 () | 2194922..2196538 | - | 1617 | WP_000620446.1 | NAD(P)/FAD-dependent oxidoreductase | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|