MGE detailed information
MGE type: Non-Mobilizable plasmid MGE length: 111777 bp
Accession: NZ_LT963394 Location: 1..111777 Organism: Pseudomonas syringae pv. cerasicola isolate CFBP6109 Replicon: plasmid PP3
Accession: NZ_LT963394 Location: 1..111777 Organism: Pseudomonas syringae pv. cerasicola isolate CFBP6109 Replicon: plasmid PP3
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| C6H44_RS29925 () | 186..2330 | + | 2145 | WP_060411279.1 | DotA/TraY family protein | - |
| C6H44_RS29930 () | 2433..2678 | + | 246 | WP_003344389.1 | hypothetical protein | - |
| C6H44_RS29935 () | 2675..3325 | + | 651 | WP_054998685.1 | plasmid IncI1-type surface exclusion protein ExcA | - |
| C6H44_RS29940 () | 3418..4620 | + | 1203 | WP_060411280.1 | hypothetical protein | - |
| C6H44_RS29945 () | 4610..4987 | - | 378 | WP_003344395.1 | PIN domain-containing protein | Toxin Detail |
| C6H44_RS29950 () | 4984..5184 | - | 201 | WP_020309477.1 | type II toxin-antitoxin system VapB family antitoxin | Antitoxin Detail |
| C6H44_RS29955 () | 5277..6362 | + | 1086 | WP_060411281.1 | thioredoxin fold domain-containing protein | - |
| C6H44_RS29960 () | 6349..8637 | + | 2289 | WP_060411282.1 | type IV secretory system conjugative DNA transfer family protein | - |
| C6H44_RS29970 () | 9075..9503 | + | 429 | WP_060411283.1 | GntR family transcriptional regulator | - |
| C6H44_RS29975 () | 9723..9920 | + | 198 | WP_010209245.1 | ribbon-helix-helix protein, CopG family | - |
| C6H44_RS29980 () | 10281..11594 | + | 1314 | WP_060411284.1 | replication initiation protein | - |
| C6H44_RS29985 () | 11715..11948 | + | 234 | Protein_12 | peptidase S24 | - |
| C6H44_RS29995 () | 12128..13357 | - | 1230 | WP_104725427.1 | IS91 family transposase IS801 | Transposase |
| C6H44_RS30000 () | 13338..13619 | - | 282 | WP_060411106.1 | hypothetical protein | - |
| C6H44_RS30005 () | 13968..15190 | + | 1223 | WP_104725400.1 | IS3 family transposase IS51 | Transposase |
| C6H44_RS30010 () | 15229..15995 | - | 767 | Protein_16 | IS91 family transposase IS801 | Transposase |
| C6H44_RS30015 () | 16356..16499 | - | 144 | Protein_17 | Tn3 family transposase | - |
| C6H44_RS30020 () | 16498..16698 | - | 201 | Protein_18 | DUF4158 domain-containing protein | - |
| C6H44_RS30025 () | 16682..23896 | - | 7215 | WP_104725472.1 | type III effector protein XopAD | - |
| C6H44_RS30035 () | 24450..25088 | - | 639 | WP_060411062.1 | Tn3 family transposase TnpR_TnEc1 | Transposase |
| C6H44_RS30040 () | 25387..25788 | + | 402 | Protein_21 | ParA family protein | - |
| C6H44_RS30045 () | 25933..26910 | - | 978 | WP_032701292.1 | IS5 family transposase IS52 | Transposase |
| C6H44_RS30055 () | 27268..27522 | + | 255 | WP_003381801.1 | hypothetical protein | - |
| C6H44_RS30060 () | 27947..28612 | - | 666 | WP_060411120.1 | LexA family transcriptional regulator | - |
| C6H44_RS30065 () | 28700..28930 | + | 231 | WP_032704469.1 | helix-turn-helix domain-containing protein | - |
| C6H44_RS30070 () | 29280..29987 | + | 708 | WP_099315812.1 | Type IV secretion system protein virB1 | VF |
| C6H44_RS30075 () | 29987..30322 | + | 336 | WP_057459626.1 | hypothetical protein | - |
| C6H44_RS30080 () | 30335..30736 | + | 402 | Protein_28 | VirB3 family type IV secretion system protein | - |
| C6H44_RS30085 () | 30672..33224 | + | 2553 | WP_173645201.1 | conjugal transfer protein | - |
| C6H44_RS30090 () | 33221..33907 | + | 687 | WP_104725468.1 | P-type DNA transfer protein VirB5 | - |
| C6H44_RS30100 () | 35514..35759 | - | 246 | WP_143518614.1 | hypothetical protein | - |
| C6H44_RS30105 () | 35780..37006 | + | 1227 | WP_104725473.1 | IS91 family transposase ISPsy3 | Transposase |
| C6H44_RS30110 () | 37186..37551 | + | 366 | Protein_34 | recombinase family protein | - |
| C6H44_RS30115 () | 37646..37924 | + | 279 | WP_004667962.1 | hypothetical protein | - |
| C6H44_RS30120 () | 37975..38160 | + | 186 | WP_003381808.1 | hypothetical protein | - |
| C6H44_RS30125 () | 38239..39312 | - | 1074 | WP_104725406.1 | IS630 family transposase ISPsy1 | Transposase |
| C6H44_RS30130 () | 39421..40494 | - | 1074 | WP_057460452.1 | IS630 family transposase ISPsy1 | Transposase |
| C6H44_RS30135 () | 40604..40786 | + | 183 | WP_099277372.1 | type II toxin-antitoxin system RelE/ParE family toxin | - |
| C6H44_RS30140 () | 40890..41603 | + | 714 | WP_004667960.1 | UPF0149 family protein | - |
| C6H44_RS30145 () | 41677..42420 | + | 744 | WP_004667958.1 | hypothetical protein | - |
| C6H44_RS30150 () | 42417..43229 | + | 813 | WP_004662079.1 | DUF3037 domain-containing protein | - |
| C6H44_RS30160 () | 43453..44151 | - | 699 | WP_004643894.1 | GNAT family N-acetyltransferase | - |
| C6H44_RS30165 () | 44296..45576 | - | 1281 | WP_104725474.1 | IS91 family transposase ISPsy3 | Transposase |
| C6H44_RS30170 () | 45960..46610 | + | 651 | WP_003344252.1 | ParA family protein | - |
| C6H44_RS30175 () | 46691..46981 | + | 291 | WP_010217231.1 | hypothetical protein | - |
| C6H44_RS31200 () | 47055..47198 | + | 144 | WP_155511877.1 | hypothetical protein | - |
| C6H44_RS30180 () | 47283..48251 | + | 969 | WP_104725475.1 | IS5 family transposase ISPsy2 | Transposase |
| C6H44_RS30185 () | 48264..49486 | + | 1223 | WP_104725405.1 | IS3 family transposase IS51 | Transposase |
| C6H44_RS30190 () | 49988..50224 | + | 237 | Protein_50 | FadR family transcriptional regulator | - |
| C6H44_RS30195 () | 50367..51344 | - | 978 | WP_032701292.1 | IS5 family transposase IS52 | Transposase |
| C6H44_RS30200 () | 52898..53197 | + | 300 | Protein_52 | hypothetical protein | - |
| C6H44_RS30205 () | 53271..54248 | + | 978 | WP_032701292.1 | IS5 family transposase IS52 | Transposase |
| C6H44_RS30210 () | 54379..54987 | + | 609 | WP_104725469.1 | hypothetical protein | - |
| C6H44_RS30215 () | 55168..55463 | - | 296 | Protein_55 | DDE-type integrase/transposase/recombinase | - |
| C6H44_RS30220 () | 55695..56768 | + | 1074 | WP_007247680.1 | IS630 family transposase ISPsy1 | Transposase |
| C6H44_RS30225 () | 56877..57950 | + | 1074 | WP_057460452.1 | IS630 family transposase ISPsy1 | Transposase |
| C6H44_RS30230 () | 58042..58895 | + | 854 | WP_099277549.1 | IS5 family transposase | - |
| C6H44_RS30235 () | 59042..60022 | - | 981 | WP_057403839.1 | IS5 family transposase ISPsy2 | Transposase |
| C6H44_RS30240 () | 60196..60645 | + | 450 | WP_044324991.1 | hypothetical protein | - |
| C6H44_RS30245 () | 60675..61748 | - | 1074 | WP_057460452.1 | IS630 family transposase ISPsy1 | Transposase |
| C6H44_RS30250 () | 61916..62893 | + | 978 | WP_032701292.1 | IS5 family transposase IS52 | Transposase |
| C6H44_RS30255 () | 63156..63467 | - | 312 | WP_060411320.1 | hypothetical protein | - |
| C6H44_RS30260 () | 63516..64169 | - | 654 | WP_004666657.1 | hypothetical protein | VF |
| C6H44_RS30265 () | 64527..65165 | + | 639 | WP_104725476.1 | Tn3 family transposase TnpR_TnEc1 | Transposase |
| C6H44_RS30275 () | 65720..72148 | + | 6429 | WP_104725477.1 | type III effector protein XopAD | - |
| C6H44_RS30280 () | 72334..73563 | + | 1230 | WP_104725427.1 | IS91 family transposase IS801 | Transposase |
| C6H44_RS30285 () | 73728..73927 | - | 200 | Protein_68 | IS3 family transposase IS51 | Transposase |
| C6H44_RS30290 () | 73978..74061 | - | 84 | Protein_69 | hypothetical protein | - |
| C6H44_RS30295 () | 74259..74888 | + | 630 | WP_004666923.1 | AAA family ATPase | - |
| C6H44_RS30300 () | 74909..75127 | + | 219 | WP_004666922.1 | chromosome partitioning protein ParB | - |
| C6H44_RS30305 () | 75434..75715 | + | 282 | Protein_72 | SOS response-associated peptidase family protein | - |
| C6H44_RS30310 () | 76085..76537 | + | 453 | WP_019331432.1 | hypothetical protein | - |
| C6H44_RS30315 () | 76631..76810 | + | 180 | WP_017685223.1 | hypothetical protein | - |
| C6H44_RS30320 () | 77077..77301 | + | 225 | WP_054097264.1 | carbon storage regulator | - |
| C6H44_RS30325 () | 77337..77750 | + | 414 | WP_060411041.1 | TraR/DksA family transcriptional regulator | - |
| C6H44_RS30330 () | 77788..78009 | + | 222 | WP_060411040.1 | hypothetical protein | - |
| C6H44_RS30340 () | 78335..78955 | - | 621 | WP_005747119.1 | Tn3 family transposase TnpR_TnEc1 | Transposase |
| C6H44_RS30345 () | 79342..79662 | - | 321 | WP_015060653.1 | type II toxin-antitoxin system YafQ family toxin | - |
| C6H44_RS30350 () | 79743..80816 | + | 1074 | WP_057460452.1 | IS630 family transposase ISPsy1 | Transposase |
| C6H44_RS30355 () | 80819..81100 | - | 282 | WP_060411183.1 | type II toxin-antitoxin system RelB/DinJ family antitoxin | - |
| C6H44_RS30370 () | 82340..82717 | + | 378 | WP_007247501.1 | hypothetical protein | - |
| C6H44_RS30375 () | 82764..83600 | + | 837 | WP_057459645.1 | DUF945 domain-containing protein | - |
| C6H44_RS30380 () | 83832..85054 | + | 1223 | WP_104725470.1 | IS3 family transposase IS51 | Transposase |
| C6H44_RS30390 () | 85221..85565 | - | 345 | WP_057460521.1 | hypothetical protein | - |
| C6H44_RS30395 () | 85824..86153 | + | 330 | WP_003344297.1 | ribbon-helix-helix protein, CopG family | - |
| C6H44_RS30400 () | 86164..88119 | + | 1956 | WP_057460544.1 | hypothetical protein | Relaxase |
| C6H44_RS30405 () | 88363..88728 | - | 366 | WP_019740136.1 | helix-turn-helix transcriptional regulator | - |
| C6H44_RS30410 () | 89096..90073 | - | 978 | WP_032701292.1 | IS5 family transposase IS52 | Transposase |
| C6H44_RS30415 () | 90336..90539 | + | 204 | WP_004666898.1 | hypothetical protein | - |
| C6H44_RS30425 () | 90832..91323 | + | 492 | WP_054068047.1 | hypothetical protein | VF |
| C6H44_RS30430 () | 91360..91833 | + | 474 | WP_054068048.1 | DotD/TraH family lipoprotein | - |
| C6H44_RS30435 () | 91830..92630 | + | 801 | WP_057453449.1 | hypothetical protein | VF |
| C6H44_RS30440 () | 92642..93799 | + | 1158 | WP_057458760.1 | hypothetical protein | VF |
| C6H44_RS30445 () | 93831..94064 | + | 234 | WP_004644386.1 | hypothetical protein | - |
| C6H44_RS30450 () | 94102..94350 | + | 249 | WP_024419793.1 | hypothetical protein | - |
| C6H44_RS31205 () | 94343..94555 | + | 213 | WP_146230769.1 | hypothetical protein | - |
| C6H44_RS30455 () | 94552..95103 | + | 552 | WP_057458761.1 | Cardiolipin synthase B | VF |
| C6H44_RS30465 () | 95415..95702 | + | 288 | WP_057424448.1 | IcmT/TraK family protein | - |
| C6H44_RS30470 () | 96246..100187 | + | 3942 | WP_162496106.1 | DNA primase | - |
| C6H44_RS30475 () | 100213..100566 | + | 354 | WP_004661195.1 | conjugal transfer protein | - |
| C6H44_RS30480 () | 100563..101270 | + | 708 | WP_004661192.1 | DotI/IcmL/TraM family protein | - |
| C6H44_RS30485 () | 101327..102382 | + | 1056 | WP_080437690.1 | hypothetical protein | VF |
| C6H44_RS30490 () | 102388..103746 | + | 1359 | WP_057458873.1 | conjugal transfer protein TraO | - |
| C6H44_RS30495 () | 103743..104453 | + | 711 | WP_057458872.1 | conjugal transfer protein TraP | - |
| C6H44_RS30500 () | 104462..105004 | + | 543 | WP_054073046.1 | conjugal transfer protein TraQ | - |
| C6H44_RS30505 () | 105080..105466 | + | 387 | WP_057458871.1 | hypothetical protein | VF |
| C6H44_RS30510 () | 105510..105779 | - | 270 | WP_004666886.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin Detail |
| C6H44_RS30515 () | 105769..105960 | - | 192 | WP_004666885.1 | hypothetical protein | Antitoxin Detail |
| C6H44_RS30520 () | 106145..106804 | + | 660 | WP_057421806.1 | hypothetical protein | - |
| C6H44_RS30525 () | 106779..109826 | + | 3048 | WP_060411275.1 | conjugal transfer protein | - |
| C6H44_RS30530 () | 109849..110085 | + | 237 | WP_060411276.1 | hypothetical protein | - |
| C6H44_RS30535 () | 110128..111342 | + | 1215 | WP_060411277.1 | conjugal transfer protein TraW | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|