MGE detailed information
MGE type: Prophage MGE length: 60728 bp
Accession: NZ_LR898874 Location: 2906858..2967585 Organism: Escherichia coli isolate MSB1_4I-sc-2280412 Replicon: chromosome
Accession: NZ_LR898874 Location: 2906858..2967585 Organism: Escherichia coli isolate MSB1_4I-sc-2280412 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| JMX41_RS14290 () | 2902288..2903661 | + | 1374 | WP_001330271.1 | MFS transporter | - |
| JMX41_RS14295 () | 2903717..2904598 | - | 882 | WP_201555447.1 | protease HtpX | - |
| JMX41_RS14300 () | 2904790..2906838 | - | 2049 | WP_001055782.1 | carboxy terminal-processing peptidase | - |
| JMX41_RS14305 () | 2906858..2907556 | - | 699 | WP_000431376.1 | RNA chaperone ProQ | - |
| JMX41_RS14310 () | 2907653..2908150 | - | 498 | WP_001029106.1 | L-methionine (R)-S-oxide reductase | - |
| JMX41_RS14315 () | 2908280..2909563 | + | 1284 | WP_001330270.1 | membrane integrity lipid transport subunit YebS | - |
| JMX41_RS14320 () | 2909532..2912165 | + | 2634 | WP_001330269.1 | Intermembrane transport protein YebT | VF |
| JMX41_RS14325 () | 2912245..2913684 | + | 1440 | WP_024233854.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| JMX41_RS14330 () | 2913802..2914038 | + | 237 | WP_001295499.1 | DUF1480 family protein | - |
| JMX41_RS14335 () | 2914143..2914334 | + | 192 | WP_001296140.1 | YebW family protein | - |
| JMX41_RS14340 () | 2914335..2914991 | - | 657 | WP_001330268.1 | protein-serine/threonine phosphatase | - |
| JMX41_RS14345 () | 2915470..2915757 | - | 288 | WP_016236010.1 | hypothetical protein | - |
| JMX41_RS14350 () | 2915767..2916045 | - | 279 | WP_001204581.1 | hypothetical protein | - |
| JMX41_RS14355 () | 2916042..2918102 | - | 2061 | WP_201555449.1 | prophage tail fiber N-terminal domain-containing protein | - |
| JMX41_RS14360 () | 2918167..2918766 | - | 600 | WP_001513563.1 | Outer membrane protein X | VF |
| JMX41_RS14365 () | 2918834..2922526 | - | 3693 | WP_201555451.1 | DUF1983 domain-containing protein | - |
| JMX41_RS14370 () | 2922773..2923405 | - | 633 | WP_071781460.1 | tail assembly protein | - |
| JMX41_RS14375 () | 2923351..2924094 | - | 744 | WP_001528990.1 | C40 family peptidase | - |
| JMX41_RS14380 () | 2924105..2924803 | - | 699 | WP_126502550.1 | phage minor tail protein L | - |
| JMX41_RS14385 () | 2924803..2925132 | - | 330 | WP_000847298.1 | phage tail protein | - |
| JMX41_RS14390 () | 2925129..2927741 | - | 2613 | WP_201555458.1 | phage tail tape measure protein | - |
| JMX41_RS14395 () | 2927731..2928135 | - | 405 | WP_000533397.1 | phage tail assembly protein T | - |
| JMX41_RS14400 () | 2928162..2928593 | - | 432 | WP_201555460.1 | phage minor tail protein G | - |
| JMX41_RS14405 () | 2928612..2929358 | - | 747 | WP_016234254.1 | phage tail protein | - |
| JMX41_RS14410 () | 2929366..2929764 | - | 399 | WP_000682708.1 | tail protein | - |
| JMX41_RS14415 () | 2929777..2930400 | - | 624 | WP_016236016.1 | phage tail protein | - |
| JMX41_RS14420 () | 2930403..2930684 | - | 282 | WP_001281346.1 | DNA breaking-rejoining protein | - |
| JMX41_RS14425 () | 2930677..2931003 | - | 327 | WP_001097059.1 | DUF2190 family protein | - |
| JMX41_RS14430 () | 2931091..2933070 | - | 1980 | WP_123005510.1 | ATP-dependent Clp protease proteolytic subunit | VF |
| JMX41_RS14435 () | 2933060..2934562 | - | 1503 | WP_016236019.1 | phage portal protein | - |
| JMX41_RS14440 () | 2934562..2934774 | - | 213 | WP_000102415.1 | hypothetical protein | - |
| JMX41_RS14445 () | 2934771..2936894 | - | 2124 | WP_001077619.1 | phage terminase large subunit family protein | - |
| JMX41_RS14450 () | 2936891..2937367 | - | 477 | WP_016236020.1 | DUF1441 family protein | - |
| JMX41_RS14455 () | 2937656..2937868 | - | 213 | WP_016236021.1 | hypothetical protein | - |
| JMX41_RS14460 () | 2937910..2938134 | - | 225 | WP_016236022.1 | hypothetical protein | - |
| JMX41_RS14465 () | 2938202..2938402 | - | 201 | WP_042094754.1 | Rz1 family lipoprotein | - |
| JMX41_RS14470 () | 2938921..2939454 | - | 534 | WP_016236259.1 | lysozyme | - |
| JMX41_RS14475 () | 2939583..2939897 | + | 315 | WP_000551290.1 | hypothetical protein | - |
| JMX41_RS14480 () | 2939907..2940713 | - | 807 | WP_016236025.1 | YdfR family protein | - |
| JMX41_RS14485 () | 2940718..2940933 | - | 216 | WP_000284510.1 | class II holin family protein | - |
| JMX41_RS14490 () | 2941009..2941278 | - | 270 | WP_016236026.1 | DUF826 domain-containing protein | - |
| JMX41_RS14495 () | 2941316..2941498 | - | 183 | WP_023143432.1 | DUF1378 family protein | - |
| JMX41_RS14500 () | 2941634..2943604 | - | 1971 | WP_201555461.1 | DUF1737 domain-containing protein | - |
| JMX41_RS14505 () | 2944087..2944200 | - | 114 | WP_158663336.1 | DUF3927 family protein | - |
| JMX41_RS14510 () | 2944176..2944373 | - | 198 | WP_000917765.1 | hypothetical protein | - |
| JMX41_RS14515 () | 2944598..2945149 | - | 552 | WP_016236028.1 | DUF1133 family protein | - |
| JMX41_RS14520 () | 2945146..2945436 | - | 291 | WP_016236029.1 | DUF1364 domain-containing protein | - |
| JMX41_RS14525 () | 2945436..2946035 | - | 600 | WP_016236030.1 | DUF1367 family protein | - |
| JMX41_RS14530 () | 2946595..2946750 | - | 156 | WP_000813254.1 | type I toxin-antitoxin system toxin HokD | - |
| JMX41_RS14535 () | 2947310..2947825 | - | 516 | WP_016236032.1 | hypothetical protein | - |
| JMX41_RS14540 () | 2947822..2947998 | - | 177 | WP_000753058.1 | hypothetical protein | - |
| JMX41_RS14550 () | 2949603..2949959 | - | 357 | WP_000403778.1 | hypothetical protein | - |
| JMX41_RS14555 () | 2949937..2950398 | - | 462 | WP_001209471.1 | ead/Ea22-like family protein | - |
| JMX41_RS14560 () | 2950395..2950691 | - | 297 | WP_001266130.1 | DUF4406 domain-containing protein | - |
| JMX41_RS14565 () | 2950688..2951080 | - | 393 | WP_001141099.1 | DUF977 family protein | - |
| JMX41_RS14570 () | 2951096..2951857 | - | 762 | WP_016236033.1 | DUF1627 domain-containing protein | - |
| JMX41_RS14575 () | 2951880..2952626 | - | 747 | WP_000788991.1 | ATP-binding protein | - |
| JMX41_RS14580 () | 2952633..2953421 | - | 789 | WP_016236034.1 | hypothetical protein | - |
| JMX41_RS14585 () | 2953499..2953924 | - | 426 | WP_016236035.1 | phage protein | - |
| JMX41_RS14590 () | 2953921..2954163 | - | 243 | WP_001033914.1 | helix-turn-helix domain-containing protein | - |
| JMX41_RS14595 () | 2954260..2954679 | + | 420 | WP_016236036.1 | helix-turn-helix domain-containing protein | - |
| JMX41_RS14600 () | 2954985..2955137 | + | 153 | WP_000379551.1 | DUF1391 family protein | - |
| JMX41_RS14605 () | 2955546..2955767 | + | 222 | WP_000560226.1 | killing protein KilR | - |
| JMX41_RS14610 () | 2955761..2955937 | + | 177 | WP_000245528.1 | hypothetical protein | - |
| JMX41_RS14615 () | 2956012..2956288 | + | 277 | Protein_2873 | hypothetical protein | - |
| JMX41_RS14620 () | 2956388..2959063 | + | 2676 | WP_103687675.1 | exodeoxyribonuclease VIII | - |
| JMX41_RS14625 () | 2959056..2959865 | + | 810 | WP_000166317.1 | recombination protein RecT | - |
| JMX41_RS14630 () | 2959922..2960116 | + | 195 | WP_042853000.1 | type I toxin-antitoxin system endodeoxyribonuclease toxin RalR | - |
| JMX41_RS14635 () | 2960109..2960297 | + | 189 | WP_001356607.1 | DUF1187 family protein | - |
| - () | 2960115..2960293 | - | 179 | NuclAT_1 | - | - |
| - () | 2960115..2960293 | - | 179 | NuclAT_1 | - | - |
| - () | 2960115..2960293 | - | 179 | NuclAT_1 | - | - |
| - () | 2960115..2960293 | - | 179 | NuclAT_1 | - | - |
| JMX41_RS14640 () | 2960404..2960685 | + | 282 | WP_001311878.1 | excisionase | - |
| JMX41_RS14645 () | 2960651..2961727 | + | 1077 | WP_016236038.1 | hypothetical protein ; Integrase | Integrase |
| - () | 2961858..2962092 | + | 235 | - | - | Antitoxin Detail |
| - () | 2961859..2961962 | - | 104 | - | - | Toxin Detail |
| JMX41_RS14650 () | 2962120..2962461 | - | 342 | WP_000976472.1 | YebY family protein | - |
| JMX41_RS14655 () | 2962474..2963346 | - | 873 | WP_000879331.1 | copper homeostasis membrane protein CopD | - |
| JMX41_RS14660 () | 2963350..2963724 | - | 375 | WP_000168737.1 | CopC domain-containing protein YobA | - |
| JMX41_RS14665 () | 2963863..2964093 | + | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| JMX41_RS14670 () | 2964195..2964851 | + | 657 | WP_001571542.1 | carbon-nitrogen hydrolase family protein | - |
| JMX41_RS14675 () | 2964875..2965537 | + | 663 | WP_000944240.1 | exodeoxyribonuclease X | - |
| JMX41_RS14680 () | 2965534..2967585 | - | 2052 | WP_001571544.1 | oligopeptidase B | - |
| JMX41_RS14685 () | 2967794..2968453 | - | 660 | WP_000024728.1 | tellurite resistance TerB family protein | - |
| JMX41_RS14690 () | 2968780..2969136 | - | 357 | WP_001295500.1 | protein YebF | - |
| JMX41_RS14695 () | 2969203..2969493 | - | 291 | WP_000257738.1 | DNA damage-inducible protein YebG | - |
| JMX41_RS14700 () | 2969627..2970805 | + | 1179 | WP_000173463.1 | formate-dependent phosphoribosylglycinamide formyltransferase | - |
| JMX41_RS14705 () | 2970861..2971502 | - | 642 | WP_000800512.1 | bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|