MGE detailed information
MGE type: Non-Mobilizable plasmid MGE length: 131650 bp
Accession: NZ_CP123976 Location: 1..131650 Organism: Thioclava nitratireducens strain M1-LQ-LJL-11 Replicon: plasmid pLX02
Accession: NZ_CP123976 Location: 1..131650 Organism: Thioclava nitratireducens strain M1-LQ-LJL-11 Replicon: plasmid pLX02
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| P0N61_RS20195 (P0N61_20195) | 773..1432 | - | 660 | WP_281143585.1 | hypothetical protein | - |
| P0N61_RS20200 (P0N61_20200) | 1537..2955 | - | 1419 | WP_281143586.1 | hypothetical protein | - |
| P0N61_RS20205 (P0N61_20205) | 3401..3865 | + | 465 | WP_281143587.1 | hypothetical protein | - |
| P0N61_RS20210 (P0N61_20210) | 4081..4461 | + | 381 | WP_281143588.1 | hypothetical protein | - |
| P0N61_RS20215 (P0N61_20215) | 4545..4973 | + | 429 | WP_281143589.1 | hypothetical protein | - |
| P0N61_RS20220 (P0N61_20220) | 5291..5845 | + | 555 | WP_281143590.1 | hypothetical protein | - |
| P0N61_RS20225 (P0N61_20225) | 6161..6436 | + | 276 | WP_281143591.1 | hypothetical protein | - |
| P0N61_RS20230 (P0N61_20230) | 6445..6663 | - | 219 | WP_281143629.1 | hypothetical protein | - |
| P0N61_RS20235 (P0N61_20235) | 7102..7260 | - | 159 | Protein_9 | integrase core domain-containing protein | - |
| P0N61_RS20240 (P0N61_20240) | 7495..8733 | - | 1239 | WP_281143592.1 | amidohydrolase family protein | - |
| P0N61_RS20245 (P0N61_20245) | 8755..9036 | - | 282 | WP_281143593.1 | hypothetical protein | - |
| P0N61_RS20250 (P0N61_20250) | 9041..9406 | - | 366 | WP_281143594.1 | Rieske (2Fe-2S) protein | - |
| P0N61_RS20255 (P0N61_20255) | 9516..9971 | + | 456 | WP_281143595.1 | MarR family transcriptional regulator | - |
| P0N61_RS20260 (P0N61_20260) | 9982..10914 | - | 933 | WP_281143596.1 | DMT family transporter | - |
| P0N61_RS20265 (P0N61_20265) | 10942..11394 | - | 453 | WP_281143597.1 | hypothetical protein | - |
| P0N61_RS20270 (P0N61_20270) | 11409..12401 | - | 993 | WP_281143598.1 | ABC transporter substrate-binding protein | - |
| P0N61_RS20275 (P0N61_20275) | 12413..13534 | - | 1122 | WP_281143625.1 | Gfo/Idh/MocA family oxidoreductase | - |
| P0N61_RS20280 (P0N61_20280) | 13575..14513 | - | 939 | WP_281143599.1 | PDR/VanB family oxidoreductase | - |
| P0N61_RS20285 (P0N61_20285) | 14617..15777 | - | 1161 | WP_281143600.1 | alpha-hydroxy acid oxidase | - |
| P0N61_RS20290 (P0N61_20290) | 15896..17176 | - | 1281 | WP_281143601.1 | Rieske 2Fe-2S domain-containing protein | - |
| P0N61_RS20295 (P0N61_20295) | 17658..19559 | + | 1902 | WP_281143602.1 | TRAP transporter fused permease subunit | - |
| P0N61_RS20300 (P0N61_20300) | 19684..20244 | + | 561 | WP_281143603.1 | hypothetical protein | - |
| P0N61_RS20305 (P0N61_20305) | 20321..21358 | - | 1038 | WP_281143604.1 | 2-hydroxyacid dehydrogenase | - |
| P0N61_RS20310 (P0N61_20310) | 21355..23124 | - | 1770 | WP_281143605.1 | thiamine pyrophosphate-binding protein | - |
| P0N61_RS20315 (P0N61_20315) | 23230..24021 | - | 792 | WP_281143626.1 | carboxylating nicotinate-nucleotide diphosphorylase | - |
| P0N61_RS20320 (P0N61_20320) | 24276..25757 | - | 1482 | WP_281143606.1 | aldehyde dehydrogenase family protein | - |
| P0N61_RS20325 (P0N61_20325) | 26092..26883 | + | 792 | WP_281143607.1 | IclR family transcriptional regulator | - |
| P0N61_RS20330 (P0N61_20330) | 27075..27605 | + | 531 | WP_281143608.1 | MarR family transcriptional regulator | - |
| P0N61_RS20335 (P0N61_20335) | 27672..28661 | - | 990 | WP_281143609.1 | TAXI family TRAP transporter solute-binding subunit | - |
| P0N61_RS20340 (P0N61_20340) | 28915..29739 | - | 825 | WP_281143610.1 | universal stress protein | - |
| P0N61_RS20345 (P0N61_20345) | 29887..30560 | - | 674 | Protein_31 | Pca regulon regulatory protein | VF |
| P0N61_RS20350 (P0N61_20350) | 30649..31353 | + | 705 | WP_281143611.1 | 3-oxoacid CoA-transferase subunit A | - |
| P0N61_RS20355 (P0N61_20355) | 31353..32049 | + | 697 | Protein_33 | 3-oxoacid CoA-transferase subunit B | - |
| P0N61_RS20360 (P0N61_20360) | 32049..32417 | + | 369 | Protein_34 | 3-oxoadipyl-CoA thiolase | - |
| P0N61_RS20365 (P0N61_20365) | 32417..32581 | + | 165 | WP_281143612.1 | hypothetical protein | - |
| P0N61_RS20370 (P0N61_20370) | 32587..33504 | - | 918 | WP_281143613.1 | LysR substrate-binding domain-containing protein | - |
| P0N61_RS20375 (P0N61_20375) | 33580..34362 | + | 783 | WP_281143614.1 | 3-oxoadipate enol-lactonase | - |
| P0N61_RS20380 (P0N61_20380) | 34359..34742 | + | 384 | WP_281143615.1 | 4-carboxymuconolactone decarboxylase | - |
| P0N61_RS20385 (P0N61_20385) | 34739..35467 | + | 729 | WP_281143616.1 | protocatechuate 3,4-dioxygenase subunit beta | - |
| P0N61_RS20390 (P0N61_20390) | 35469..36074 | + | 606 | WP_281143617.1 | protocatechuate 3,4-dioxygenase subunit alpha | - |
| P0N61_RS20395 (P0N61_20395) | 36147..37199 | + | 1053 | WP_281143618.1 | 3-carboxy-cis,cis-muconate cycloisomerase | - |
| P0N61_RS20400 (P0N61_20400) | 37259..37687 | + | 429 | Protein_42 | IS6 family transposase ISRssp3 | Transposase |
| P0N61_RS20405 (P0N61_20405) | 38044..39201 | - | 1158 | WP_281143619.1 | HEPN-associated N-terminal domain-containing protein | - |
| P0N61_RS20410 (P0N61_20410) | 39257..39997 | - | 741 | WP_281143620.1 | UPF0489 family protein | - |
| P0N61_RS20415 (P0N61_20415) | 40021..40626 | - | 606 | WP_281143621.1 | SMC-Scp complex subunit ScpB | - |
| P0N61_RS20420 (P0N61_20420) | 40623..41576 | - | 954 | WP_281143622.1 | DUF1403 family protein | - |
| P0N61_RS20425 (P0N61_20425) | 41815..42291 | + | 477 | Protein_47 | integrase | - |
| P0N61_RS20430 (P0N61_20430) | 42313..43671 | - | 1359 | WP_088726318.1 | ISKra4 family transposase ISSusp4 | Transposase |
| P0N61_RS20435 (P0N61_20435) | 43983..45344 | - | 1362 | WP_088726123.1 | NADH-quinone oxidoreductase subunit N | - |
| P0N61_RS20440 (P0N61_20440) | 45350..46810 | - | 1461 | WP_088665108.1 | NADH-quinone oxidoreductase subunit M | - |
| P0N61_RS20445 (P0N61_20445) | 46822..48720 | - | 1899 | WP_281143623.1 | proton-conducting transporter membrane subunit | - |
| P0N61_RS20450 (P0N61_20450) | 48717..49028 | - | 312 | WP_088665110.1 | NADH-quinone oxidoreductase subunit NuoK | - |
| P0N61_RS20455 (P0N61_20455) | 49025..49543 | - | 519 | WP_017469393.1 | NADH-quinone oxidoreductase subunit J | - |
| P0N61_RS20460 (P0N61_20460) | 49540..50439 | - | 900 | WP_088665111.1 | NADH-quinone oxidoreductase subunit H | - |
| P0N61_RS20465 (P0N61_20465) | 50436..52886 | - | 2451 | WP_281143624.1 | heavy metal-binding domain-containing protein | - |
| P0N61_RS20470 (P0N61_20470) | 52883..53245 | - | 363 | WP_017468394.1 | NADH-quinone oxidoreductase subunit A | - |
| P0N61_RS20480 (P0N61_20480) | 54260..54814 | - | 555 | Protein_58 | ATP-binding protein | - |
| P0N61_RS20485 (P0N61_20485) | 55057..55656 | - | 600 | WP_088726121.1 | rhomboid family intramembrane serine protease | - |
| P0N61_RS20490 (P0N61_20490) | 55786..56322 | - | 537 | WP_240504184.1 | hypothetical protein | - |
| P0N61_RS20495 (P0N61_20495) | 56478..57206 | - | 729 | WP_088726116.1 | DUF736 family protein | - |
| P0N61_RS20500 (P0N61_20500) | 57314..57634 | - | 321 | WP_088726115.1 | hypothetical protein | - |
| P0N61_RS20505 (P0N61_20505) | 57735..58196 | - | 462 | WP_088726114.1 | hypothetical protein | - |
| P0N61_RS20510 (P0N61_20510) | 58198..58584 | - | 387 | WP_088726113.1 | hypothetical protein | - |
| P0N61_RS20515 (P0N61_20515) | 58707..62969 | - | 4263 | WP_088726112.1 | strawberry notch family protein | - |
| P0N61_RS20520 (P0N61_20520) | 63072..63224 | - | 153 | WP_075777220.1 | StaA | - |
| P0N61_RS20525 (P0N61_20525) | 63372..63890 | - | 519 | WP_088726111.1 | type II toxin-antitoxin system YhaV family toxin | Toxin Detail |
| P0N61_RS20530 (P0N61_20530) | 63887..64213 | - | 327 | WP_088726120.1 | type II toxin-antitoxin system PrlF family antitoxin | Antitoxin Detail |
| P0N61_RS20535 (P0N61_20535) | 64338..64991 | - | 654 | WP_075777222.1 | hypothetical protein | - |
| P0N61_RS20540 (P0N61_20540) | 65094..65687 | - | 594 | WP_088726110.1 | regulator | - |
| P0N61_RS20545 (P0N61_20545) | 65762..67744 | - | 1983 | WP_088726109.1 | ParB/RepB/Spo0J family partition protein | - |
| P0N61_RS20550 (P0N61_20550) | 67901..68290 | - | 390 | WP_088726108.1 | DUF3768 domain-containing protein | - |
| P0N61_RS20555 (P0N61_20555) | 68378..68587 | - | 210 | WP_088726107.1 | DUF6330 family protein | - |
| P0N61_RS20560 (P0N61_20560) | 68611..69549 | - | 939 | WP_088726106.1 | zincin-like metallopeptidase domain-containing protein | - |
| P0N61_RS20565 (P0N61_20565) | 69590..70075 | - | 486 | WP_088726105.1 | hypothetical protein | - |
| P0N61_RS20570 (P0N61_20570) | 70407..71501 | - | 1095 | WP_088726104.1 | Fic family protein | - |
| P0N61_RS20575 (P0N61_20575) | 71646..72962 | - | 1317 | WP_088726103.1 | plasmid replication protein RepC | - |
| P0N61_RS20580 (P0N61_20580) | 73182..74129 | - | 948 | WP_240504181.1 | plasmid partitioning protein RepB | - |
| P0N61_RS20585 (P0N61_20585) | 74153..75337 | - | 1185 | WP_088726101.1 | plasmid partitioning protein RepA | - |
| P0N61_RS20590 (P0N61_20590) | 76039..76266 | + | 228 | WP_009815510.1 | AbrB/MazE/SpoVT family DNA-binding domain-containing protein | Antitoxin Detail |
| P0N61_RS20595 (P0N61_20595) | 76256..76651 | + | 396 | WP_088726100.1 | PIN domain-containing protein | Toxin Detail |
| P0N61_RS20600 (P0N61_20600) | 76635..77357 | - | 723 | Protein_82 | Tn3 family transposase ISPsy42 | Transposase |
| P0N61_RS20605 (P0N61_20605) | 77505..79139 | + | 1635 | WP_024099411.1 | IS481 family transposase ISChy6 | Transposase |
| P0N61_RS20610 (P0N61_20610) | 79141..80022 | + | 882 | WP_024099410.1 | TniB family NTP-binding protein | - |
| P0N61_RS20615 (P0N61_20615) | 80019..80810 | + | 792 | WP_007803196.1 | TniQ family protein | - |
| P0N61_RS20620 (P0N61_20620) | 80866..82416 | + | 1551 | Protein_86 | cation-translocating P-type ATPase | - |
| P0N61_RS20625 (P0N61_20625) | 82480..82992 | + | 513 | WP_088726096.1 | L,D-transpeptidase family protein | - |
| P0N61_RS20630 (P0N61_20630) | 82973..84580 | - | 1608 | WP_088726095.1 | apolipoprotein N-acyltransferase | - |
| P0N61_RS20635 (P0N61_20635) | 84547..85005 | - | 459 | WP_088726094.1 | Lipoprotein signal peptidase | VF |
| P0N61_RS20640 (P0N61_20640) | 85034..85816 | - | 783 | WP_038008344.1 | ZIP family metal transporter | - |
| P0N61_RS20645 (P0N61_20645) | 85829..86284 | - | 456 | WP_043772538.1 | DUF411 domain-containing protein | - |
| P0N61_RS20650 (P0N61_20650) | 86288..87661 | - | 1374 | WP_088726093.1 | M23 family metallopeptidase | - |
| P0N61_RS20655 (P0N61_20655) | 87658..88284 | - | 627 | WP_088726092.1 | SCO family protein | - |
| P0N61_RS20660 (P0N61_20660) | 88284..88751 | - | 468 | WP_088726091.1 | copper chaperone PCu(A)C | - |
| P0N61_RS20665 (P0N61_20665) | 88775..89434 | - | 660 | WP_088726090.1 | thioredoxin domain-containing protein | - |
| P0N61_RS20670 (P0N61_20670) | 89431..89853 | - | 423 | WP_088726089.1 | disulfide bond formation protein B | - |
| P0N61_RS20675 (P0N61_20675) | 89859..90425 | - | 567 | WP_088726119.1 | SCO family protein | - |
| P0N61_RS20680 (P0N61_20680) | 90633..91061 | + | 429 | WP_088726118.1 | IS607 family transposase ISChh1 | Transposase |
| P0N61_RS20685 (P0N61_20685) | 91165..91743 | + | 579 | WP_088726088.1 | cation transporter | - |
| P0N61_RS20690 (P0N61_20690) | 91839..92594 | + | 756 | WP_088726087.1 | transglutaminase family protein | - |
| P0N61_RS20695 (P0N61_20695) | 92584..93501 | + | 918 | WP_088726086.1 | cation diffusion facilitator family transporter | - |
| P0N61_RS20700 (P0N61_20700) | 93498..94055 | + | 558 | WP_088726085.1 | methyltransferase | - |
| P0N61_RS20705 (P0N61_20705) | 94111..94689 | + | 579 | WP_281143627.1 | prephenate dehydrogenase/arogenate dehydrogenase family protein | - |
| P0N61_RS20710 (P0N61_20710) | 94938..96296 | - | 1359 | WP_088726318.1 | ISKra4 family transposase ISSusp4 | Transposase |
| P0N61_RS20715 (P0N61_20715) | 96356..96934 | + | 579 | Protein_105 | tyrosine-type recombinase/integrase | - |
| P0N61_RS20720 (P0N61_20720) | 98646..99860 | - | 1215 | WP_088726259.1 | plasmid replication protein RepC | - |
| P0N61_RS20725 (P0N61_20725) | 100036..100986 | - | 951 | WP_088726258.1 | plasmid partitioning protein RepB | - |
| P0N61_RS20730 (P0N61_20730) | 100991..102166 | - | 1176 | WP_088726257.1 | hypothetical protein | VF |
| P0N61_RS20735 (P0N61_20735) | 102541..103560 | + | 1020 | WP_088726256.1 | GSU2403 family nucleotidyltransferase fold protein | - |
| P0N61_RS20740 (P0N61_20740) | 104172..105554 | + | 1383 | WP_281143563.1 | ISNCY family transposase ISRel26 | Transposase |
| P0N61_RS20745 (P0N61_20745) | 105739..106710 | - | 972 | WP_281143564.1 | D-2-hydroxyacid dehydrogenase family protein | - |
| P0N61_RS20750 (P0N61_20750) | 106764..108188 | - | 1425 | WP_281143565.1 | MmgE/PrpD family protein | - |
| P0N61_RS20755 (P0N61_20755) | 108191..109255 | - | 1065 | WP_281143566.1 | AbrB family transcriptional regulator | - |
| P0N61_RS20760 (P0N61_20760) | 109263..110771 | - | 1509 | WP_281143567.1 | tripartite tricarboxylate transporter permease | - |
| P0N61_RS20765 (P0N61_20765) | 110783..111244 | - | 462 | WP_075777536.1 | tripartite tricarboxylate transporter TctB family protein | - |
| P0N61_RS20770 (P0N61_20770) | 111305..112261 | - | 957 | WP_281143568.1 | tripartite tricarboxylate transporter substrate binding protein | - |
| P0N61_RS20775 (P0N61_20775) | 112364..113065 | - | 702 | WP_281143569.1 | GntR family transcriptional regulator | - |
| P0N61_RS20780 (P0N61_20780) | 113172..113276 | - | 105 | Protein_118 | IS6 family transposase | - |
| P0N61_RS20785 (P0N61_20785) | 113531..114871 | + | 1341 | WP_281143570.1 | hypothetical protein | - |
| P0N61_RS20790 (P0N61_20790) | 114820..115209 | + | 390 | WP_281143571.1 | helix-turn-helix domain-containing protein | - |
| P0N61_RS20795 (P0N61_20795) | 115381..117216 | + | 1836 | WP_281143572.1 | hypothetical protein | - |
| P0N61_RS20800 (P0N61_20800) | 117226..118674 | + | 1449 | WP_281143573.1 | hypothetical protein | - |
| P0N61_RS20805 (P0N61_20805) | 118827..119531 | + | 705 | WP_281143574.1 | hypothetical protein | - |
| P0N61_RS20810 (P0N61_20810) | 119647..120681 | + | 1035 | WP_281143575.1 | IS110 family transposase ISAzs32 | Transposase |
| P0N61_RS20815 (P0N61_20815) | 121025..121204 | - | 180 | WP_281143628.1 | DUF6527 family protein | - |
| P0N61_RS20820 (P0N61_20820) | 121351..122742 | - | 1392 | WP_281143576.1 | ThiF family adenylyltransferase | - |
| P0N61_RS20825 (P0N61_20825) | 122739..123881 | - | 1143 | WP_281143577.1 | multiubiquitin domain-containing protein | - |
| P0N61_RS20830 (P0N61_20830) | 124035..124244 | + | 210 | WP_281143578.1 | ribbon-helix-helix protein, CopG family | - |
| P0N61_RS20835 (P0N61_20835) | 124241..124888 | + | 648 | WP_281143579.1 | hypothetical protein | - |
| P0N61_RS20840 (P0N61_20840) | 124885..125373 | + | 489 | WP_281143580.1 | helix-turn-helix transcriptional regulator | - |
| P0N61_RS20845 (P0N61_20845) | 125392..126324 | + | 933 | WP_281143581.1 | DUF955 domain-containing protein | - |
| P0N61_RS20850 (P0N61_20850) | 126455..126625 | + | 171 | WP_281143582.1 | hypothetical protein | - |
| P0N61_RS20855 (P0N61_20855) | 126647..126985 | - | 339 | WP_088736309.1 | YnfA family protein | - |
| P0N61_RS20860 (P0N61_20860) | 127078..128649 | - | 1572 | WP_281142954.1 | IS66 family transposase ISRel8 | Transposase |
| P0N61_RS20865 (P0N61_20865) | 128704..129054 | - | 351 | WP_088725149.1 | IS66 family transposase ISUnCu14 | Transposase |
| P0N61_RS20870 (P0N61_20870) | 129264..129374 | - | 111 | Protein_136 | IS66 family transposase ISUnCu14 | Transposase |
| P0N61_RS20875 (P0N61_20875) | 129553..131091 | - | 1539 | Protein_137 | IS66 family transposase ISPpa5 | Transposase |
| P0N61_RS20880 (P0N61_20880) | 131154..131501 | - | 348 | WP_281143583.1 | IS66 family transposase ISPpa5 | Transposase |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|