MGE detailed information
MGE type: Prophage MGE length: 38254 bp
Accession: NZ_CP123237 Location: 2306962..2345215 Organism: Escherichia coli strain 4588 Replicon: chromosome
Accession: NZ_CP123237 Location: 2306962..2345215 Organism: Escherichia coli strain 4588 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| QET42_RS11365 (2302861) | 2302861..2304081 | + | 1221 | WP_000225262.1 | DNA-binding transcriptional repressor Mlc | - |
| QET42_RS11370 (2304206) | 2304206..2304901 | + | 696 | WP_000919231.1 | dethiobiotin synthase | - |
| QET42_RS11375 (2304854) | 2304854..2306146 | - | 1293 | WP_001315626.1 | voltage-gated ClC-type chloride channel ClcB | - |
| QET42_RS11380 (2306305) | 2306305..2306919 | - | 615 | WP_000148710.1 | Tat proofreading chaperone DmsD | - |
| QET42_RS11385 (2306962) | 2306962..2307816 | - | 855 | WP_049254808.1 | dimethyl sulfoxide reductase anchor subunit family protein | - |
| QET42_RS11390 (2307818) | 2307818..2308435 | - | 618 | WP_000213028.1 | dimethylsulfoxide reductase subunit B | - |
| QET42_RS11395 (2308446) | 2308446..2310869 | - | 2424 | WP_001340362.1 | DmsA/YnfE/YnfF family dimethyl sulfoxide reductase | - |
| QET42_RS11400 (2310930) | 2310930..2313356 | - | 2427 | WP_000041675.1 | DmsA/YnfE/YnfF family dimethyl sulfoxide reductase | - |
| QET42_RS11405 (2313555) | 2313555..2313860 | - | 306 | WP_001300836.1 | DUF1161 domain-containing protein | - |
| QET42_RS11410 (2313968) | 2313968..2314678 | + | 711 | WP_001321287.1 | YnfC family lipoprotein | - |
| QET42_RS11415 (2314681) | 2314681..2315241 | - | 561 | WP_001138581.1 | spermidine N1-acetyltransferase | - |
| QET42_RS11420 (2315276) | 2315276..2315617 | - | 342 | WP_000705211.1 | DUF1283 family protein | - |
| QET42_RS11425 (2315752) | 2315752..2316078 | + | 327 | WP_000598292.1 | YnfA family protein | - |
| QET42_RS11430 (2316284) | 2316284..2317498 | + | 1215 | WP_001295394.1 | starvation-sensing protein RspA | - |
| QET42_RS11435 (2317510) | 2317510..2318529 | + | 1020 | WP_000836066.1 | Zn-dependent oxidoreductase | - |
| QET42_RS11440 (2318717) | 2318717..2319997 | - | 1281 | WP_000876958.1 | 2,4-dienoyl-CoA reductase ; Integrase | Integrase |
| QET42_RS11445 (2320032) | 2320032..2320283 | - | 252 | WP_000005552.1 | excisionase family protein | - |
| QET42_RS11450 (2320356) | 2320356..2322065 | - | 1710 | Protein_2239 | 3'-5' exoribonuclease | - |
| QET42_RS11455 (2322053) | 2322053..2322310 | + | 258 | Protein_2240 | hypothetical protein | - |
| QET42_RS11460 (2322351) | 2322351..2322773 | + | 423 | WP_001151262.1 | DUF977 family protein | - |
| QET42_RS11465 (2322770) | 2322770..2323259 | + | 490 | Protein_2242 | class I SAM-dependent methyltransferase | - |
| QET42_RS11470 (2323642) | 2323642..2325181 | - | 1540 | Protein_2243 | IS66 family transposase ISEc22 | Transposase |
| QET42_RS11475 (2325230) | 2325230..2325460 | - | 231 | Protein_2244 | IS66 family insertion sequence element accessory protein TnpB | - |
| QET42_RS11480 (2325466) | 2325466..2325588 | - | 123 | Protein_2245 | IS66 family transposase ISEc22 | Transposase |
| QET42_RS11485 (2325831) | 2325831..2326252 | + | 422 | Protein_2246 | hypothetical protein | - |
| QET42_RS11490 (2326908) | 2326908..2327930 | + | 1023 | Protein_2247 | ISNCY family transposase ISCARN112 | Transposase |
| QET42_RS11495 (2328051) | 2328051..2328200 | + | 150 | WP_011443592.1 | ISNCY family transposase ISCARN112 | Transposase |
| QET42_RS11500 (2328637) | 2328637..2328969 | - | 333 | WP_001301033.1 | FlxA-like family protein | - |
| QET42_RS11505 (2329172) | 2329172..2329477 | - | 306 | WP_103522616.1 | protein YdfV | - |
| QET42_RS11510 (2329502) | 2329502..2329741 | + | 240 | WP_000534858.1 | type II toxin-antitoxin system antitoxin RelB | Antitoxin Detail |
| QET42_RS11515 (2329741) | 2329741..2330028 | + | 288 | WP_000323025.1 | type II toxin-antitoxin system mRNA interferase RelE | Toxin Detail |
| QET42_RS11520 (2330100) | 2330100..2330255 | + | 156 | WP_000813254.1 | type I toxin-antitoxin system toxin HokD | - |
| QET42_RS11525 (2330472) | 2330472..2330723 | + | 252 | WP_000980994.1 | protein Rem | - |
| QET42_RS11530 (2330790) | 2330790..2331068 | + | 279 | WP_012304870.1 | hypothetical protein | - |
| QET42_RS11535 (2331070) | 2331070..2332119 | + | 1050 | WP_001265199.1 | DUF968 domain-containing protein | - |
| QET42_RS11540 (2332133) | 2332133..2332885 | + | 753 | WP_001047135.1 | antitermination protein | - |
| QET42_RS11545 (2333163) | 2333163..2333252 | - | 90 | WP_120795389.1 | hypothetical protein | - |
| QET42_RS11550 (2333307) | 2333307..2333519 | - | 213 | WP_000087756.1 | cold shock-like protein CspF | - |
| QET42_RS11555 (2333820) | 2333820..2334035 | + | 216 | WP_000066484.1 | cold shock-like protein CspB | - |
| QET42_RS11560 (2334399) | 2334399..2334569 | - | 171 | WP_211180497.1 | putative zinc-binding protein YnfU | - |
| QET42_RS11565 (2334789) | 2334789..2335004 | + | 216 | WP_000839590.1 | phage lysis protein EssD | - |
| QET42_RS11570 (2335009) | 2335009..2335320 | + | 312 | WP_000189916.1 | YdfR family protein | - |
| QET42_RS11575 (2335317) | 2335317..2335850 | + | 534 | WP_001092971.1 | lysozyme | - |
| QET42_RS11580 (2335847) | 2335847..2336343 | + | 497 | Protein_2265 | DUF2514 domain-containing protein | - |
| QET42_RS11585 (2336706) | 2336706..2336918 | + | 213 | WP_000066495.1 | cold shock protein CspI | - |
| QET42_RS11590 (2336929) | 2336929..2337117 | + | 189 | WP_071524604.1 | cold-shock protein | - |
| QET42_RS11595 (2337120) | 2337120..2337185 | + | 66 | WP_120795388.1 | small protein YnfR | - |
| QET42_RS11600 (2337190) | 2337190..2337420 | + | 231 | WP_000720962.1 | protein YnfN | - |
| QET42_RS11605 (2337592) | 2337592..2337765 | + | 174 | WP_001019606.1 | addiction module toxin, GnsA/GnsB family | - |
| QET42_RS11610 (2337917) | 2337917..2338327 | - | 411 | WP_000373090.1 | DUF1398 domain-containing protein | - |
| QET42_RS11615 (2338385) | 2338385..2338618 | - | 234 | WP_001368374.1 | YlcI/YnfO family protein | - |
| QET42_RS11620 (2339007) | 2339007..2339552 | + | 546 | WP_000453611.1 | DNA-packaging protein | - |
| QET42_RS11625 (2339527) | 2339527..2341332 | + | 1806 | WP_049254577.1 | phage terminase large subunit family protein | - |
| QET42_RS11630 (2341332) | 2341332..2341907 | + | 576 | WP_000885611.1 | tail fiber assembly protein | - |
| QET42_RS11635 (2342005) | 2342005..2342595 | - | 591 | WP_000078177.1 | Tn3 family transposase TnpR_ISSba14 | Transposase |
| QET42_RS11640 (2342912) | 2342912..2343145 | - | 234 | WP_000836768.1 | cold shock protein YdfK | - |
| QET42_RS11645 (2343214) | 2343214..2343327 | - | 114 | WP_120795384.1 | YnaM/YnfT family protein | - |
| QET42_RS11650 (2343848) | 2343848..2345215 | + | 1368 | Protein_2279 | MHS family MFS transporter | - |
| QET42_RS11655 (2345304) | 2345304..2346764 | + | 1461 | WP_000527809.1 | mannitol dehydrogenase family protein | - |
| QET42_RS11660 (2346799) | 2346799..2347002 | - | 204 | WP_000214712.1 | putative selenium delivery protein YdfZ | - |
| QET42_RS11665 (2347179) | 2347179..2347865 | - | 687 | WP_000215549.1 | DNA-binding transcriptional regulator rspR | - |
| QET42_RS11670 (2347954) | 2347954..2348700 | - | 747 | WP_000636571.1 | bifunctional NADP-dependent 3-hydroxy acid dehydrogenase/3-hydroxypropionate dehydrogenase YdfG | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|