MGE detailed information
MGE type: Integrative_Conjugative_Elements MGE length: 45893 bp
Accession: NZ_CP123009 Location: 4090602..4136494 Organism: Escherichia coli O155 strain NWU_3 Replicon: chromosome
Accession: NZ_CP123009 Location: 4090602..4136494 Organism: Escherichia coli O155 strain NWU_3 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| QEN28_RS19560 (4087306) | 4087306..4088253 | + | 948 | WP_001193612.1 | omptin family outer membrane protease OmpP | - |
| QEN28_RS19565 (4088346) | 4088346..4089845 | + | 1500 | WP_040072489.1 | alpha/beta hydrolase | - |
| QEN28_RS19570 (4090347) | 4090347..4090481 | + | 135 | Protein_3849 | serine/threonine protein kinase | - |
| QEN28_RS19575 (4090602) | 4090602..4091342 | + | 741 | WP_001603634.1 | Tyrosine recombinase XerC ; Integrase | Integrase |
| QEN28_RS19580 (4091628) | 4091628..4092605 | - | 978 | WP_000361610.1 | RepB family plasmid replication initiator protein | - |
| QEN28_RS19585 (4093445) | 4093445..4094086 | - | 642 | WP_000990665.1 | hypothetical protein | - |
| QEN28_RS19590 (4096201) | 4096201..4096491 | + | 291 | WP_000538310.1 | hypothetical protein | - |
| QEN28_RS19595 (4096481) | 4096481..4097380 | + | 900 | WP_000963206.1 | nucleotide-binding protein | - |
| QEN28_RS19600 (4097430) | 4097430..4099655 | - | 2226 | WP_040073691.1 | P-loop NTPase fold protein | - |
| QEN28_RS19605 (4099657) | 4099657..4100745 | - | 1089 | WP_000952217.1 | transcriptional repressor PifC | - |
| QEN28_RS19610 (4101325) | 4101325..4101543 | + | 219 | WP_000813634.1 | type II toxin-antitoxin system antitoxin CcdA | Antitoxin Detail |
| QEN28_RS19615 (4101545) | 4101545..4101850 | + | 306 | WP_029305600.1 | type II toxin-antitoxin system toxin CcdB | Toxin Detail |
| QEN28_RS19620 (4101851) | 4101851..4102432 | + | 582 | Protein_3859 | hypothetical protein ; Integrase | Integrase |
| QEN28_RS19625 (4102408) | 4102408..4102548 | + | 141 | Protein_3860 | hypothetical protein ; Integrase | Integrase |
| QEN28_RS19630 (4103136) | 4103136..4104302 | + | 1167 | WP_000772446.1 | hypothetical protein | VF |
| QEN28_RS19635 (4104302) | 4104302..4105273 | + | 972 | WP_000817031.1 | ParB/RepB/Spo0J family plasmid partition protein | - |
| QEN28_RS19640 (4106033) | 4106033..4106934 | + | 902 | Protein_3863 | DUF1281 domain-containing protein | - |
| QEN28_RS19645 (4106938) | 4106938..4107243 | + | 306 | WP_010892536.1 | hypothetical protein | - |
| QEN28_RS19650 (4107320) | 4107320..4108003 | + | 684 | WP_000085939.1 | DNA methylase | - |
| QEN28_RS19655 (4108004) | 4108004..4108225 | + | 222 | WP_001104904.1 | hypothetical protein | - |
| QEN28_RS19660 (4108119) | 4108119..4108673 | + | 555 | WP_001358893.1 | DUF1380 family protein | - |
| QEN28_RS19665 (4108719) | 4108719..4109495 | + | 777 | WP_001005032.1 | hypothetical protein | - |
| QEN28_RS19670 (4109909) | 4109909..4110334 | + | 426 | WP_001198920.1 | antirestriction protein | - |
| QEN28_RS19675 (4110381) | 4110381..4110803 | + | 423 | WP_000271685.1 | DUF1380 family protein | - |
| QEN28_RS19680 (4110800) | 4110800..4110991 | + | 192 | WP_001027495.1 | hypothetical protein | - |
| QEN28_RS19685 (4110961) | 4110961..4111470 | - | 510 | WP_071600123.1 | hypothetical protein | - |
| QEN28_RS19690 (4111788) | 4111788..4112327 | + | 540 | WP_000290801.1 | single-stranded DNA-binding protein | - |
| QEN28_RS19695 (4112384) | 4112384..4112617 | + | 234 | WP_000005990.1 | DUF905 family protein | - |
| QEN28_RS19700 (4112683) | 4112683..4114641 | + | 1959 | WP_000117173.1 | ParB/RepB/Spo0J family partition protein | - |
| QEN28_RS19705 (4114696) | 4114696..4115130 | + | 435 | WP_000845928.1 | conjugation system SOS inhibitor PsiB | - |
| QEN28_RS19710 (4115127) | 4115127..4115889 | + | 763 | Protein_3877 | plasmid SOS inhibition protein A | - |
| - (4115858) | 4115858..4116056 | + | 199 | NuclAT_1 | - | - |
| - (4115858) | 4115858..4116056 | + | 199 | NuclAT_1 | - | - |
| - (4115858) | 4115858..4116056 | + | 199 | NuclAT_1 | - | - |
| - (4115858) | 4115858..4116056 | + | 199 | NuclAT_1 | - | - |
| QEN28_RS19715 (4116063) | 4116063..4116212 | + | 150 | Protein_3878 | DUF5431 family protein | - |
| QEN28_RS19720 (4116154) | 4116154..4116279 | + | 126 | WP_096937776.1 | type I toxin-antitoxin system Hok family toxin | Toxin Detail |
| QEN28_RS19725 (4116580) | 4116580..4116876 | - | 297 | Protein_3880 | hypothetical protein | - |
| QEN28_RS19730 (4116946) | 4116946..4117152 | + | 207 | WP_000547965.1 | hypothetical protein | - |
| QEN28_RS19735 (4117177) | 4117177..4117464 | + | 288 | WP_000107542.1 | hypothetical protein | - |
| QEN28_RS19740 (4117583) | 4117583..4118404 | + | 822 | WP_001234417.1 | DUF932 domain-containing protein | - |
| QEN28_RS19745 (4118700) | 4118700..4119302 | - | 603 | WP_000243701.1 | hypothetical protein | VF |
| QEN28_RS19750 (4119624) | 4119624..4120007 | + | 384 | WP_000124981.1 | conjugal transfer relaxosome DNA-binding protein TraM | - |
| QEN28_RS19755 (4120197) | 4120197..4120883 | + | 687 | WP_000332492.1 | PAS domain-containing protein | - |
| QEN28_RS19760 (4120977) | 4120977..4121204 | + | 228 | WP_001254386.1 | conjugal transfer relaxosome protein TraY | - |
| QEN28_RS19765 (4121238) | 4121238..4121603 | + | 366 | WP_000340270.1 | type IV conjugative transfer system pilin TraA | - |
| QEN28_RS19770 (4121618) | 4121618..4121929 | + | 312 | WP_000012126.1 | type IV conjugative transfer system protein TraL | - |
| QEN28_RS19775 (4121951) | 4121951..4122517 | + | 567 | WP_000399792.1 | type IV conjugative transfer system protein TraE | - |
| QEN28_RS19780 (4122504) | 4122504..4123232 | + | 729 | WP_001230787.1 | type-F conjugative transfer system secretin TraK | - |
| QEN28_RS19785 (4123232) | 4123232..4124659 | + | 1428 | WP_000146673.1 | F-type conjugal transfer pilus assembly protein TraB | - |
| QEN28_RS19790 (4124649) | 4124649..4125239 | + | 591 | WP_000002779.1 | conjugal transfer pilus-stabilizing protein TraP | - |
| QEN28_RS19795 (4125226) | 4125226..4125546 | + | 321 | WP_001057287.1 | conjugal transfer protein TrbD | - |
| QEN28_RS19800 (4125539) | 4125539..4125790 | + | 252 | WP_001038342.1 | conjugal transfer protein TrbG | - |
| QEN28_RS19805 (4125787) | 4125787..4126302 | + | 516 | WP_000809838.1 | type IV conjugative transfer system lipoprotein TraV | - |
| QEN28_RS19810 (4126437) | 4126437..4126658 | + | 222 | WP_001278689.1 | conjugal transfer protein TraR | - |
| QEN28_RS19815 (4126818) | 4126818..4129445 | + | 2628 | WP_001064245.1 | type IV secretion system protein TraC | - |
| QEN28_RS19820 (4129442) | 4129442..4129828 | + | 387 | WP_000099690.1 | type-F conjugative transfer system protein TrbI | - |
| QEN28_RS19825 (4129825) | 4129825..4130457 | + | 633 | WP_001203724.1 | type-F conjugative transfer system protein TraW | - |
| QEN28_RS19830 (4130454) | 4130454..4131446 | + | 993 | WP_000830183.1 | conjugal transfer pilus assembly protein TraU | - |
| QEN28_RS19835 (4131455) | 4131455..4132093 | + | 639 | WP_000777695.1 | type-F conjugative transfer system pilin assembly protein TrbC | - |
| QEN28_RS19840 (4132090) | 4132090..4133898 | + | 1809 | WP_000821838.1 | type-F conjugative transfer system mating-pair stabilization protein TraN | - |
| QEN28_RS19845 (4133925) | 4133925..4134182 | + | 258 | WP_000864318.1 | conjugal transfer protein TrbE | - |
| QEN28_RS19850 (4134175) | 4134175..4134918 | + | 744 | WP_001030378.1 | type-F conjugative transfer system pilin assembly protein TraF | - |
| QEN28_RS19855 (4134934) | 4134934..4135281 | + | 348 | WP_001287913.1 | conjugal transfer protein TrbA | - |
| QEN28_RS19860 (4135283) | 4135283..4135597 | - | 315 | WP_000415565.1 | hypothetical protein | - |
| QEN28_RS19865 (4135678) | 4135678..4135962 | + | 285 | WP_000624108.1 | type-F conjugative transfer system pilin chaperone TraQ | - |
| QEN28_RS19870 (4135949) | 4135949..4136494 | + | 546 | WP_000059834.1 | type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB | - |
| QEN28_RS19875 (4136424) | 4136424..4136765 | + | 342 | WP_001443031.1 | P-type conjugative transfer protein TrbJ | - |
| QEN28_RS19880 (4136752) | 4136752..4137144 | + | 393 | WP_001208954.1 | F-type conjugal transfer protein TrbF | - |
| QEN28_RS19885 (4137131) | 4137131..4138504 | + | 1374 | WP_000944323.1 | conjugal transfer pilus assembly protein TraH | - |
| QEN28_RS19890 (4138501) | 4138501..4141323 | + | 2823 | WP_001007008.1 | conjugal transfer mating-pair stabilization protein TraG | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|