MGE detailed information
MGE type: Conjugative plasmid MGE length: 95101 bp
Accession: NZ_CP122678 Location: 1..95101 Organism: Escherichia coli strain ETEC4070 Replicon: plasmid unnamed2
Accession: NZ_CP122678 Location: 1..95101 Organism: Escherichia coli strain ETEC4070 Replicon: plasmid unnamed2
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| QDW57_RS25150 (1) | 1..1209 | + | 1209 | WP_000121273.1 | IncI1-type conjugal transfer protein TrbA | - |
| QDW57_RS25155 (1228) | 1228..2298 | + | 1071 | WP_000151583.1 | IncI1-type conjugal transfer protein TrbB | - |
| QDW57_RS25160 (2291) | 2291..4582 | + | 2292 | WP_072119433.1 | F-type conjugative transfer protein TrbC | - |
| QDW57_RS25165 (4619) | 4619..7318 | - | 2700 | WP_001405892.1 | Protein TraI | Relaxase |
| QDW57_RS25170 (7329) | 7329..7661 | - | 333 | WP_001283947.1 | IncI1-type relaxosome accessory protein NikA | - |
| QDW57_RS25175 (7895) | 7895..8230 | + | 336 | WP_000157095.1 | molybdopterin-guanine dinucleotide biosynthesis protein MobC | - |
| QDW57_RS25180 (8316) | 8316..9164 | - | 849 | WP_001077019.1 | DUF4942 domain-containing protein | - |
| QDW57_RS25185 (9745) | 9745..9996 | + | 252 | WP_000148286.1 | helix-turn-helix transcriptional regulator | - |
| QDW57_RS25190 (10027) | 10027..10272 | - | 246 | WP_001260884.1 | hypothetical protein | - |
| QDW57_RS25195 (10272) | 10272..11162 | - | 891 | WP_000038332.1 | Recombination-promoting nuclease RpnA | VF |
| QDW57_RS25200 (11227) | 11227..11493 | - | 267 | WP_119014978.1 | hypothetical protein | - |
| QDW57_RS25205 (11587) | 11587..12021 | - | 435 | WP_000218863.1 | hypothetical protein | - |
| QDW57_RS25210 (12750) | 12750..13250 | - | 501 | WP_000117622.1 | antirestriction protein ArdA | - |
| QDW57_RS25215 (13713) | 13713..14309 | - | 597 | WP_000978012.1 | hypothetical protein | - |
| QDW57_RS25220 (14306) | 14306..15025 | - | 720 | WP_001276261.1 | plasmid SOS inhibition protein A | - |
| QDW57_RS25225 (15022) | 15022..15456 | - | 435 | WP_000845904.1 | conjugation system SOS inhibitor PsiB | - |
| QDW57_RS25230 (15511) | 15511..17469 | - | 1959 | WP_157972606.1 | ParB/RepB/Spo0J family partition protein | - |
| QDW57_RS25235 (17528) | 17528..17761 | - | 234 | WP_000005985.1 | DUF905 family protein | - |
| QDW57_RS25240 (17819) | 17819..18346 | - | 528 | WP_001276114.1 | single-stranded DNA-binding protein | - |
| QDW57_RS25245 (18715) | 18715..18783 | + | 69 | Protein_19 | pilus protein | - |
| QDW57_RS25250 (19513) | 19513..21180 | + | 1668 | WP_052991863.1 | group II intron reverse transcriptase/maturase | - |
| QDW57_RS25255 (21459) | 21459..21650 | - | 192 | WP_001027497.1 | hypothetical protein | - |
| QDW57_RS25260 (21647) | 21647..22069 | - | 423 | WP_000271729.1 | DUF1380 family protein | - |
| QDW57_RS25265 (22116) | 22116..22541 | - | 426 | WP_001198886.1 | antirestriction protein | - |
| QDW57_RS25270 (22959) | 22959..23729 | - | 771 | WP_001044393.1 | hypothetical protein | - |
| QDW57_RS25275 (23780) | 23780..24266 | - | 487 | Protein_25 | DUF1380 family protein | - |
| QDW57_RS25280 (24226) | 24226..24447 | - | 222 | WP_001104887.1 | hypothetical protein | - |
| QDW57_RS25285 (24448) | 24448..25131 | - | 684 | WP_000086178.1 | DNA methylase | - |
| QDW57_RS25290 (25208) | 25208..25519 | - | 312 | WP_010891263.1 | hypothetical protein | - |
| QDW57_RS25295 (25516) | 25516..26418 | - | 903 | WP_000273918.1 | DUF1281 domain-containing protein | - |
| QDW57_RS25300 (26836) | 26836..27084 | + | 249 | WP_000618110.1 | DinI-like family protein | - |
| QDW57_RS25305 (27081) | 27081..27518 | + | 438 | WP_000109071.1 | translesion error-prone DNA polymerase V autoproteolytic subunit | - |
| QDW57_RS25310 (27518) | 27518..28792 | + | 1275 | WP_167778288.1 | Y-family DNA polymerase | - |
| QDW57_RS25315 (28794) | 28794..29210 | - | 417 | WP_001278818.1 | plasmid partitioning/stability family protein | - |
| QDW57_RS25320 (29203) | 29203..30182 | - | 980 | Protein_34 | plasmid segregation protein ParM | - |
| QDW57_RS25325 (30595) | 30595..30903 | - | 309 | WP_119014982.1 | molecular chaperone GroEL | - |
| QDW57_RS25330 (30990) | 30990..31634 | - | 645 | WP_001144036.1 | ParA family protein | - |
| QDW57_RS25335 (31814) | 31814..32593 | - | 780 | WP_151310090.1 | site-specific integrase | - |
| QDW57_RS25340 (32595) | 32595..33008 | - | 414 | WP_000465043.1 | hypothetical protein | - |
| QDW57_RS25345 (33576) | 33576..33830 | + | 255 | WP_000343103.1 | hypothetical protein | - |
| QDW57_RS25350 (33830) | 33830..34420 | + | 591 | WP_000194572.1 | hypothetical protein | - |
| QDW57_RS25355 (34440) | 34440..34787 | - | 348 | WP_001582578.1 | DUF6404 family protein | - |
| QDW57_RS25360 (34916) | 34916..35251 | + | 336 | WP_001080734.1 | colicin 1A immunity protein | - |
| QDW57_RS25365 (35273) | 35273..37153 | - | 1881 | WP_001582575.1 | colicin Ia central receptor-binding domain-containing protein | - |
| QDW57_RS25370 (37432) | 37432..38778 | - | 1347 | WP_001132032.1 | protein YagA | - |
| QDW57_RS25375 (39132) | 39132..39734 | + | 603 | WP_000517695.1 | ProQ/FINO family protein | - |
| QDW57_RS25380 (39790) | 39790..40284 | + | 495 | WP_001582574.1 | hypothetical protein | - |
| QDW57_RS25385 (40284) | 40284..40550 | + | 267 | WP_000627829.1 | hypothetical protein | - |
| QDW57_RS25390 (40820) | 40820..41023 | - | 204 | Protein_48 | hypothetical protein | - |
| QDW57_RS25395 (41129) | 41129..41332 | - | 204 | Protein_49 | type II toxin-antitoxin system RelE/ParE family toxin | - |
| QDW57_RS25400 (41481) | 41481..42341 | - | 861 | WP_000027057.1 | Beta-lactamase TEM | ARG |
| QDW57_RS25405 (42524) | 42524..43081 | - | 558 | WP_001235713.1 | Tn3 family transposase TnpR_Tn3 | Transposase |
| QDW57_RS25410 (43245) | 43245..46250 | + | 3006 | WP_001143760.1 | Tn3 family transposase TnpA_Tn3 | Transposase |
| QDW57_RS25415 (46285) | 46285..46359 | - | 75 | Protein_53 | type II toxin-antitoxin system RelE/ParE family toxin | - |
| QDW57_RS25420 (46359) | 46359..46643 | - | 285 | WP_001178089.1 | ribbon-helix-helix domain-containing protein | - |
| QDW57_RS25425 (47551) | 47551..48582 | - | 1032 | WP_000907861.1 | plasmid replication initiator RepA | - |
| QDW57_RS25430 (49540) | 49540..49818 | + | 279 | WP_219065241.1 | ash family protein | - |
| QDW57_RS25435 (49736) | 49736..50023 | + | 288 | WP_000074849.1 | conjugal transfer protein TraA | - |
| QDW57_RS25440 (50465) | 50465..50998 | + | 534 | WP_001306770.1 | transcription termination/antitermination NusG family protein | - |
| QDW57_RS25445 (51251) | 51251..51934 | + | 684 | WP_000213859.1 | conjugal transfer protein TraC | - |
| QDW57_RS25450 (52107) | 52107..52658 | + | 552 | WP_000744644.1 | hypothetical protein | - |
| QDW57_RS25455 (52820) | 52820..53074 | + | 255 | WP_001136187.1 | PilI type IV pilus biogenesis protein | - |
| QDW57_RS25460 (53241) | 53241..53537 | + | 297 | WP_000494780.1 | hypothetical protein | - |
| QDW57_RS25465 (54161) | 54161..55227 | + | 1067 | Protein_63 | hypothetical protein | VF |
| QDW57_RS25470 (55227) | 55227..55664 | + | 438 | WP_000539807.1 | hypothetical protein | VF |
| QDW57_RS25475 (55678) | 55678..57360 | + | 1683 | WP_000748143.1 | Outer membrane lipoprotein BfpB | VF |
| QDW57_RS25480 (57353) | 57353..58648 | + | 1296 | WP_001774172.1 | type 4b pilus protein PilO2 | - |
| QDW57_RS25485 (58635) | 58635..59087 | + | 453 | WP_001247870.1 | hypothetical protein | VF |
| QDW57_RS25490 (59098) | 59098..60651 | + | 1554 | WP_001492932.1 | Toxin coregulated pilus biosynthesis protein T | VF |
| QDW57_RS25495 (60664) | 60664..61761 | + | 1098 | WP_001492931.1 | Toxin coregulated pilus biosynthesis protein E | VF |
| QDW57_RS25500 (61779) | 61779..62393 | + | 615 | WP_001542527.1 | hypothetical protein | VF |
| QDW57_RS25505 (62403) | 62403..62963 | + | 561 | WP_001774171.1 | hypothetical protein | VF |
| QDW57_RS25510 (62948) | 62948..63604 | + | 657 | WP_001193554.1 | hypothetical protein | VF |
| QDW57_RS25515 (63604) | 63604..64896 | + | 1293 | WP_001417545.1 | hypothetical protein | VF |
| QDW57_RS25520 (64893) | 64893..65141 | - | 249 | WP_001349157.1 | hypothetical protein | - |
| QDW57_RS25525 (66662) | 66662..67816 | + | 1155 | WP_001139958.1 | site-specific integrase | - |
| QDW57_RS25530 (67967) | 67967..68791 | + | 825 | WP_001238935.1 | conjugal transfer protein TraE | - |
| QDW57_RS25535 (68876) | 68876..70078 | + | 1203 | WP_000976353.1 | conjugal transfer protein TraF | - |
| QDW57_RS25540 (70138) | 70138..70722 | + | 585 | WP_000977523.1 | histidine phosphatase family protein | - |
| QDW57_RS25545 (71117) | 71117..71575 | + | 459 | WP_001079808.1 | hypothetical protein | VF |
| QDW57_RS25550 (71572) | 71572..72390 | + | 819 | WP_000646097.1 | hypothetical protein | VF |
| QDW57_RS25555 (72387) | 72387..73535 | + | 1149 | WP_001024972.1 | putative protein YggR | VF |
| QDW57_RS25560 (73532) | 73532..73822 | + | 291 | WP_001299214.1 | hypothetical protein | - |
| QDW57_RS25565 (73837) | 73837..74388 | + | 552 | WP_000014584.1 | Phospholipase D | VF |
| QDW57_RS25570 (74479) | 74479..78246 | + | 3768 | WP_052983927.1 | DUF5710 domain-containing protein | - |
| QDW57_RS25575 (78264) | 78264..78611 | + | 348 | WP_001055900.1 | conjugal transfer protein | - |
| QDW57_RS25580 (78608) | 78608..79300 | + | 693 | WP_000138550.1 | DotI/IcmL family type IV secretion protein | - |
| QDW57_RS25585 (79311) | 79311..80294 | + | 984 | WP_001191879.1 | hypothetical protein | VF |
| QDW57_RS25590 (80297) | 80297..81586 | + | 1290 | WP_001774189.1 | conjugal transfer protein TraO | - |
| QDW57_RS25595 (81586) | 81586..82290 | + | 705 | WP_000801920.1 | IncI1-type conjugal transfer protein TraP | - |
| QDW57_RS25600 (82290) | 82290..82817 | + | 528 | WP_001055569.1 | conjugal transfer protein TraQ | - |
| QDW57_RS25605 (82868) | 82868..83272 | + | 405 | WP_000086959.1 | IncI1-type conjugal transfer protein TraR | - |
| QDW57_RS25610 (83336) | 83336..83524 | + | 189 | WP_001277255.1 | putative conjugal transfer protein TraS | - |
| QDW57_RS25615 (83508) | 83508..84308 | + | 801 | WP_001164788.1 | IncI1-type conjugal transfer protein TraT | - |
| QDW57_RS25620 (84398) | 84398..87442 | + | 3045 | WP_001024786.1 | IncI1-type conjugal transfer protein TraU | - |
| QDW57_RS25625 (87442) | 87442..88056 | + | 615 | WP_000337399.1 | IncI1-type conjugal transfer protein TraV | - |
| QDW57_RS25630 (88023) | 88023..89225 | + | 1203 | WP_001385654.1 | IncI1-type conjugal transfer protein TraW | - |
| QDW57_RS25635 (89254) | 89254..89838 | + | 585 | WP_001037987.1 | IncI1-type conjugal transfer protein TraX | - |
| QDW57_RS25640 (89935) | 89935..92103 | + | 2169 | WP_001774191.1 | DotA/TraY family protein | - |
| QDW57_RS25645 (92177) | 92177..92827 | + | 651 | WP_001178506.1 | plasmid IncI1-type surface exclusion protein ExcA | - |
| QDW57_RS25650 (92899) | 92899..93108 | - | 210 | WP_000062603.1 | HEAT repeat domain-containing protein | - |
| QDW57_RS25655 (93500) | 93500..93676 | + | 177 | WP_001054897.1 | hypothetical protein | - |
| QDW57_RS25660 (93741) | 93741..93836 | - | 96 | WP_001303310.1 | DinQ-like type I toxin DqlB | - |
| QDW57_RS25665 (94335) | 94335..94586 | + | 252 | WP_001291964.1 | hypothetical protein | - |
| QDW57_RS25670 (94658) | 94658..94810 | - | 153 | WP_001331364.1 | Hok/Gef family protein | Toxin Detail |
| - (94865) | 94865..94922 | + | 58 | NuclAT_0 | - | Antitoxin Detail |
| - (94865) | 94865..94922 | + | 58 | NuclAT_0 | - | Antitoxin Detail |
| - (94865) | 94865..94922 | + | 58 | NuclAT_0 | - | Antitoxin Detail |
| - (94865) | 94865..94922 | + | 58 | NuclAT_0 | - | Antitoxin Detail |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|