MGE detailed information

MGE type: Conjugative plasmid        MGE length: 135934 bp
Accession: NZ_CP122500        Location: 1..135934         Organism: Escherichia coli strain W409       Replicon: plasmid unnamed1


Gene structure


The 5 kb flanking regions of this MGE are displayed.

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
QC809_RS23515 (260) 260..565 - 306 WP_001255015.1 HTH-type transcriptional regulator HdfR VF
QC809_RS23520 (593) 593..1807 - 1215 WP_058657119.1 Bicyclomycin resistance protein ARG
QC809_RS23525 (2024) 2024..2908 - 885 WP_012728215.1 DUF3363 domain-containing protein -
QC809_RS23530 (2939) 2939..3769 - 831 Protein_3 IS91 family transposase ISVsa3 Transposase
QC809_RS23535 (3833) 3833..4537 + 705 WP_001067784.1 IS6 family transposase IS1006 Transposase
QC809_RS23540 (4622) 4622..5098 - 477 WP_223171565.1 hypothetical protein -
QC809_RS23545 (5032) 5032..6351 - 1320 Protein_6 Tn3 family transposase TnpA_TnAs3 Transposase
QC809_RS23550 (6471) 6471..6659 + 189 WP_000957857.1 hypothetical protein -
QC809_RS23555 (6669) 6669..7868 + 1200 WP_000948429.1 IS91 family transposase ISSbo1 Transposase
QC809_RS23560 (8040) 8040..9686 - 1647 Protein_9 Tn3 family transposase TnpA_TnAs3 Transposase
QC809_RS23565 (9689) 9689..9775 - 87 Protein_10 helix-turn-helix domain-containing protein -
QC809_RS23570 (9829) 9829..10533 - 705 WP_001067858.1 IS6 family transposase IS15DI Transposase
QC809_RS23575 (10524) 10524..10664 + 141 WP_071557810.1 IS1 family transposase -
QC809_RS23580 (12113) 12113..12347 + 235 Protein_13 type II toxin-antitoxin system RelE/ParE family toxin -
QC809_RS23585 (12475) 12475..12678 + 204 Protein_14 hypothetical protein -
QC809_RS23590 (12879) 12879..13229 - 351 WP_000361389.1 plasmid partitioning/stability family protein -
QC809_RS23595 (13232) 13232..14194 - 963 WP_000959884.1 plasmid segregation protein ParM -
QC809_RS23600 (14462) 14462..15166 + 705 WP_001067855.1 IS6 family transposase IS26 Transposase
QC809_RS23605 (15232) 15232..15777 + 546 Protein_18 Tn3 family transposase TnpA_Tn3 Transposase
QC809_RS23610 (15813) 15813..16228 - 416 Protein_19 IS1-like element IS1B family transposase -
QC809_RS23615 (16477) 16477..16878 - 402 WP_001398199.1 type II toxin-antitoxin system toxin endoribonuclease PemK -
QC809_RS23620 (16811) 16811..17068 - 258 WP_000557619.1 type II toxin-antitoxin system antitoxin PemI -
QC809_RS23625 (17161) 17161..17814 - 654 WP_000616807.1 CPBP family intramembrane metalloprotease -
QC809_RS23630 (18753) 18753..19610 - 858 WP_048266445.1 incFII family plasmid replication initiator RepA -
QC809_RS23635 (19603) 19603..19677 - 75 WP_001365705.1 RepA leader peptide Tap -
QC809_RS23640 (19912) 19912..20169 - 258 WP_000083821.1 replication regulatory protein RepA -
QC809_RS23645 (20574) 20574..21596 + 1023 WP_000156883.1 IS110 family transposase ISSm1 Transposase
QC809_RS23650 (22068) 22068..22421 + 354 WP_000005489.1 hypothetical protein -
QC809_RS23655 (22638) 22638..23335 + 698 WP_284654813.1 IS1 family transposase IS1S Transposase
QC809_RS23660 (23345) 23345..23518 + 174 Protein_29 IS66 family insertion sequence element accessory protein TnpB -
QC809_RS23665 (23549) 23549..23770 + 222 WP_000080227.1 hypothetical protein -
QC809_RS23670 (23722) 23722..24063 + 342 Protein_31 IS66 family transposase IS682 Transposase
QC809_RS23675 (24127) 24127..24606 - 480 WP_001496175.1 ArgR family transcriptional regulator -
QC809_RS23680 (24687) 24687..26090 - 1404 WP_000514417.1 YfcC family protein -
QC809_RS23685 (26138) 26138..27142 - 1005 WP_000154545.1 Ornithine carbamoyltransferase VF
QC809_RS23690 (27227) 27227..28138 - 912 WP_000440183.1 carbamate kinase -
QC809_RS23695 (28149) 28149..29369 - 1221 WP_000410951.1 arginine deiminase -
QC809_RS23700 (30076) 30076..30690 + 615 Protein_37 VENN motif pre-toxin domain-containing protein -
QC809_RS23705 (30690) 30690..31136 - 447 Protein_38 plasmid replication initiator RepA -
QC809_RS23710 (31129) 31129..31203 - 75 WP_032336874.1 RepA leader peptide Tap -
QC809_RS23715 (31439) 31439..31696 - 258 WP_000083833.1 replication regulatory protein RepA -
QC809_RS23720 (31980) 31980..32129 - 150 WP_001312851.1 Hok/Gef family protein Toxin Detail
- (32173) 32173..32234 + 62 NuclAT_1 - Antitoxin Detail
- (32173) 32173..32234 + 62 NuclAT_1 - Antitoxin Detail
- (32173) 32173..32234 + 62 NuclAT_1 - Antitoxin Detail
- (32173) 32173..32234 + 62 NuclAT_1 - Antitoxin Detail
QC809_RS23725 (32373) 32373..32555 - 183 WP_000968309.1 hypothetical protein -
QC809_RS23730 (32656) 32656..33242 + 587 Protein_43 IS1-like element IS1B family transposase -
QC809_RS23735 (33242) 33242..34741 - 1500 Protein_44 IS66 family transposase ISCro1 Transposase
QC809_RS23740 (34761) 34761..35108 - 348 WP_000624622.1 IS66 family transposase ISCro1 Transposase
QC809_RS23745 (35108) 35108..35785 - 678 WP_001339397.1 IS66 family transposase ISCro1 Transposase
QC809_RS23750 (35840) 35840..35929 + 90 Protein_47 IS1 family transposase -
QC809_RS23755 (36230) 36230..36442 - 213 WP_005012601.1 hypothetical protein -
QC809_RS23760 (36576) 36576..37136 - 561 WP_000139363.1 fertility inhibition protein FinO -
QC809_RS23765 (37191) 37191..37937 - 747 WP_023149624.1 conjugal transfer pilus acetylase TraX -
QC809_RS23770 (37957) 37957..43077 - 5121 WP_013362805.1 Multifunctional conjugation protein TraI Relaxase
QC809_RS23775 (43077) 43077..45275 - 2199 WP_046464200.1 type IV conjugative transfer system coupling protein TraD -
QC809_RS23780 (45527) 45527..46258 - 732 WP_000850424.1 conjugal transfer complement resistance protein TraT -
QC809_RS23785 (46272) 46272..46781 - 510 WP_000628100.1 conjugal transfer entry exclusion protein TraS -
QC809_RS23790 (46778) 46778..49603 - 2826 WP_001553826.1 conjugal transfer mating-pair stabilization protein TraG -
QC809_RS23795 (49600) 49600..50973 - 1374 WP_021518370.1 conjugal transfer pilus assembly protein TraH -
QC809_RS23800 (50960) 50960..51352 - 393 WP_000164675.1 F-type conjugal transfer protein TrbF -
QC809_RS23805 (51306) 51306..51620 - 315 WP_023149603.1 P-type conjugative transfer protein TrbJ -
QC809_RS23810 (51610) 51610..52164 - 555 WP_001553830.1 type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB -
QC809_RS23815 (52151) 52151..52435 - 285 WP_000624105.1 type-F conjugative transfer system pilin chaperone TraQ -
QC809_RS23820 (52516) 52516..52851 + 336 WP_000415571.1 hypothetical protein -
QC809_RS23825 (52832) 52832..53173 - 342 WP_000556794.1 conjugal transfer protein TrbA -
QC809_RS23830 (53187) 53187..53930 - 744 WP_001030378.1 type-F conjugative transfer system pilin assembly protein TraF -
QC809_RS23835 (53923) 53923..54180 - 258 WP_000864312.1 conjugal transfer protein TrbE -
QC809_RS23840 (54207) 54207..56015 - 1809 WP_000821840.1 type-F conjugative transfer system mating-pair stabilization protein TraN -
QC809_RS23845 (56012) 56012..56650 - 639 WP_021518374.1 type-F conjugative transfer system pilin assembly protein TrbC -
QC809_RS23850 (56659) 56659..57651 - 993 WP_000830180.1 conjugal transfer pilus assembly protein TraU -
QC809_RS23855 (57648) 57648..58280 - 633 WP_001203726.1 type-F conjugative transfer system protein TraW -
QC809_RS23860 (58277) 58277..58663 - 387 WP_000099686.1 type-F conjugative transfer system protein TrbI -
QC809_RS23865 (58660) 58660..61287 - 2628 WP_284654815.1 type IV secretion system protein TraC -
QC809_RS23870 (61447) 61447..61668 - 222 WP_001278689.1 conjugal transfer protein TraR -
QC809_RS23875 (61803) 61803..62318 - 516 WP_000809838.1 type IV conjugative transfer system lipoprotein TraV -
QC809_RS23880 (62315) 62315..62566 - 252 WP_001038342.1 conjugal transfer protein TrbG -
QC809_RS23885 (62578) 62578..62775 - 198 WP_001324648.1 conjugal transfer protein TrbD -
QC809_RS23890 (62762) 62762..63352 - 591 WP_000002787.1 conjugal transfer pilus-stabilizing protein TraP -
QC809_RS23895 (63342) 63342..64769 - 1428 WP_000146685.1 F-type conjugal transfer pilus assembly protein TraB -
QC809_RS23900 (64769) 64769..65497 - 729 WP_001230787.1 type-F conjugative transfer system secretin TraK -
QC809_RS23905 (65484) 65484..66050 - 567 WP_000399792.1 type IV conjugative transfer system protein TraE -
QC809_RS23910 (66072) 66072..66383 - 312 WP_000012106.1 type IV conjugative transfer system protein TraL -
QC809_RS23915 (66398) 66398..66763 - 366 WP_000994779.1 type IV conjugative transfer system pilin TraA -
QC809_RS23920 (66796) 66796..67197 - 402 WP_001369361.1 conjugal transfer relaxosome DNA-bindin protein TraY -
QC809_RS23925 (67290) 67290..67979 - 690 WP_000283385.1 conjugal transfer transcriptional regulator TraJ -
QC809_RS23930 (68166) 68166..68549 - 384 WP_001151524.1 conjugal transfer relaxosome DNA-binding protein TraM -
QC809_RS23935 (68870) 68870..69472 + 603 WP_013362798.1 hypothetical protein VF
QC809_RS23940 (69769) 69769..70590 - 822 WP_001234426.1 DUF932 domain-containing protein -
QC809_RS23945 (70708) 70708..70995 - 288 WP_000107535.1 hypothetical protein -
QC809_RS23950 (71020) 71020..71226 - 207 WP_000547968.1 hypothetical protein -
QC809_RS23955 (71296) 71296..71468 + 173 Protein_88 hypothetical protein -
QC809_RS23960 (71466) 71466..71696 - 231 WP_071886920.1 hypothetical protein -
QC809_RS23965 (71916) 71916..72041 - 126 WP_001372321.1 type I toxin-antitoxin system Hok family toxin Toxin Detail
QC809_RS23970 (71983) 71983..72132 - 150 Protein_91 plasmid maintenance protein Mok -
- (72118) 72118..72342 - 225 NuclAT_0 - Antitoxin Detail
- (72118) 72118..72342 - 225 NuclAT_0 - Antitoxin Detail
- (72118) 72118..72342 - 225 NuclAT_0 - Antitoxin Detail
- (72118) 72118..72342 - 225 NuclAT_0 - Antitoxin Detail
QC809_RS23975 (72154) 72154..72342 + 189 WP_001299721.1 hypothetical protein -
QC809_RS23980 (72311) 72311..73073 - 763 Protein_93 plasmid SOS inhibition protein A -
QC809_RS23985 (73070) 73070..73504 - 435 WP_000845937.1 conjugation system SOS inhibitor PsiB -
QC809_RS23990 (73559) 73559..73756 - 198 Protein_95 hypothetical protein -
QC809_RS23995 (73784) 73784..74017 - 234 WP_000005990.1 DUF905 family protein -
QC809_RS24000 (74085) 74085..74624 - 540 WP_000290840.1 single-stranded DNA-binding protein -
QC809_RS24005 (74650) 74650..74856 - 207 WP_000275856.1 hypothetical protein -
QC809_RS24010 (75096) 75096..75353 - 258 WP_023147917.1 hypothetical protein -
QC809_RS24015 (75266) 75266..75478 - 213 WP_001348622.1 hypothetical protein -
QC809_RS24020 (75504) 75504..76069 - 566 Protein_101 class I SAM-dependent methyltransferase -
QC809_RS24025 (76117) 76117..77478 - 1362 WP_000199439.1 DUF3560 domain-containing protein -
QC809_RS24030 (77530) 77530..77760 - 231 WP_000218642.1 hypothetical protein -
QC809_RS24035 (78792) 78792..78983 - 192 WP_001027495.1 hypothetical protein -
QC809_RS24040 (78980) 78980..79402 - 423 WP_000271685.1 DUF1380 family protein -
QC809_RS24045 (79449) 79449..79874 - 426 WP_001546490.1 antirestriction protein -
QC809_RS24050 (80288) 80288..81058 - 771 WP_001006251.1 hypothetical protein -
QC809_RS24055 (81103) 81103..81621 - 519 WP_223349485.1 DUF1380 family protein -
QC809_RS24060 (81551) 81551..81772 - 222 WP_001104873.1 hypothetical protein -
QC809_RS24065 (81773) 81773..82456 - 684 WP_040110341.1 DNA methylase -
QC809_RS24070 (82533) 82533..82844 - 312 WP_012615291.1 hypothetical protein -
QC809_RS24075 (82841) 82841..83743 - 903 WP_064766247.1 DUF1281 domain-containing protein -
QC809_RS24080 (84481) 84481..85452 - 972 WP_000817031.1 ParB/RepB/Spo0J family plasmid partition protein -
QC809_RS24085 (85452) 85452..86618 - 1167 WP_000772446.1 hypothetical protein VF
QC809_RS24090 (87206) 87206..87961 - 756 WP_000852146.1 replication initiation protein RepE -
QC809_RS24095 (88683) 88683..89489 - 807 WP_000016970.1 site-specific integrase -
QC809_RS24100 (89490) 89490..89795 - 306 WP_001159871.1 type II toxin-antitoxin system toxin CcdB Toxin Detail
QC809_RS24105 (89797) 89797..90015 - 219 WP_000813630.1 type II toxin-antitoxin system antitoxin CcdA -
QC809_RS24110 (90575) 90575..90805 + 231 WP_001261286.1 type II toxin-antitoxin system VapB family antitoxin -
QC809_RS24115 (90802) 90802..91218 + 417 WP_001034044.1 type II toxin-antitoxin system VapC family toxin Toxin Detail
QC809_RS24120 (91293) 91293..92858 + 1566 WP_001128474.1 AAA family ATPase -
QC809_RS24125 (92843) 92843..93370 + 528 Protein_122 DNA helicase UvrD -
QC809_RS24135 (94187) 94187..95044 - 858 WP_000968139.1 Manganese transport system membrane protein MntB ARG
QC809_RS24140 (95041) 95041..95898 - 858 WP_001101728.1 Manganese transport system membrane protein MntB ARG
QC809_RS24145 (95895) 95895..96722 - 828 WP_000983710.1 Manganese transport system ATP-binding protein MntB VF
QC809_RS24150 (96722) 96722..97411 - 690 Protein_127 putative periplasmic iron-binding protein VF
QC809_RS24155 (97447) 97447..98144 + 698 WP_224223468.1 IS1 family transposase IS1X2 Transposase
QC809_RS24160 (98191) 98191..98295 - 105 Protein_129 AAA family ATPase -
QC809_RS24165 (98297) 98297..98620 - 324 Protein_130 IS21 family transposase IS21 Transposase
QC809_RS24170 (99366) 99366..100343 + 978 WP_000361611.1 RepB family plasmid replication initiator protein -
QC809_RS24175 (100628) 100628..101368 - 741 WP_001066953.1 tyrosine-type recombinase/integrase -
QC809_RS24180 (101489) 101489..101677 - 189 WP_001309252.1 hypothetical protein -
QC809_RS24185 (102044) 102044..103213 + 1170 WP_001072358.1 hypothetical protein -
QC809_RS24190 (103439) 103439..103614 - 176 Protein_135 IS3 family transposase -
QC809_RS24195 (104060) 104060..104332 - 273 WP_001322642.1 adhesin biosynthesis transcription regulatory family protein -
QC809_RS24200 (104670) 104670..105094 - 425 Protein_137 IS3 family transposase IS2 Transposase
QC809_RS24205 (105376) 105376..107346 + 1971 WP_001496335.1 Hemin receptor VF
QC809_RS24210 (107353) 107353..108144 + 792 WP_000977394.1 DUF4198 domain-containing protein -
QC809_RS24215 (108207) 108207..108815 - 609 Protein_140 IS66 family transposase ISEc22 Transposase
QC809_RS24220 (108883) 108883..109665 - 783 WP_001317493.1 IS21 family transposase IS100kyp Transposase
QC809_RS24225 (109662) 109662..110597 - 936 Protein_142 IS21 family transposase IS100kyp Transposase
QC809_RS24230 (110647) 110647..111351 - 705 WP_001067855.1 IS6 family transposase IS26 Transposase
QC809_RS24235 (111497) 111497..112510 - 1014 WP_000845048.1 IS91 family transposase ISAzo26 Transposase
QC809_RS24240 (112802) 112802..113356 + 555 WP_063840321.1 Aminoglycoside N(6')-acetyltransferase type 1 ARG
QC809_RS24245 (113487) 113487..114317 + 831 WP_001334766.1 Beta-lactamase OXA-1 ARG
QC809_RS24250 (114455) 114455..115087 + 633 WP_000186237.1 Chloramphenicol acetyltransferase VF
QC809_RS24255 (115172) 115172..115624 + 453 WP_001749986.1 hypothetical protein ARG
QC809_RS24260 (115847) 115847..116194 + 348 WP_000679427.1 Multidrug transporter EmrE ARG
QC809_RS24265 (116188) 116188..117027 + 840 WP_000259031.1 Dihydropteroate synthase ARG
QC809_RS24270 (117155) 117155..117358 + 204 WP_000376616.1 hypothetical protein -
QC809_RS24275 (117514) 117514..118719 + 1206 WP_000184001.1 chromate efflux transporter -
QC809_RS24280 (118730) 118730..119035 + 306 WP_000130000.1 Transcriptional regulator Relaxase
QC809_RS24285 (119079) 119079..119144 + 66 Protein_154 EAL domain-containing protein -
QC809_RS24290 (119262) 119262..120026 + 765 WP_001389365.1 IS6 family transposase IS6100 Transposase
QC809_RS24295 (120519) 120519..121103 - 585 WP_001137892.1 macrolide-binding transcriptional repressor MphR(A) -
QC809_RS24300 (121103) 121103..122341 - 1239 WP_000004159.1 macrolide resistance MFS transporter Mrx(A) -
QC809_RS24305 (122338) 122338..123243 - 906 WP_000219391.1 hypothetical protein ARG
QC809_RS24310 (123365) 123365..124069 - 705 WP_001067855.1 IS6 family transposase IS26 Transposase
QC809_RS24315 (124204) 124204..124299 + 96 WP_013362819.1 23S rRNA methyltransferase attenuation leader peptide -
QC809_RS24320 (124425) 124425..125162 + 738 WP_013362818.1 rRNA adenine N-6-methyltransferase ARG
QC809_RS24325 (125792) 125792..126241 + 450 WP_013362817.1 hypothetical protein -
QC809_RS24330 (126202) 126202..126543 + 342 WP_023909256.1 60 kDa chaperonin VF
QC809_RS24335 (126818) 126818..128302 + 1485 WP_032152108.1 IS91 family transposase ISVsa3 Transposase
QC809_RS24340 (128625) 128625..129329 - 705 WP_001067855.1 IS6 family transposase IS26 Transposase
QC809_RS24345 (129606) 129606..131099 - 1494 WP_001120888.1 IS91 family transposase ISVsa3 Transposase
QC809_RS24350 (131211) 131211..131516 - 306 WP_001255015.1 HTH-type transcriptional regulator HdfR VF
QC809_RS24355 (131544) 131544..132757 - 1214 Protein_168 Bicyclomycin resistance protein ARG
QC809_RS24360 (132974) 132974..133858 - 885 WP_021598067.1 DUF3363 domain-containing protein -
QC809_RS24365 (133903) 133903..134541 - 639 Protein_170 IS91 family transposase ISVsa3 Transposase
QC809_RS24370 (134538) 134538..135023 + 486 Protein_171 IS6 family transposase IS1006 Transposase
QC809_RS24375 (135108) 135108..135584 - 477 WP_223171565.1 hypothetical protein -
QC809_RS24380 (135518) 135518..135934 - 417 WP_284654819.1 Tn3 family transposase TnpA_ISShes11 Transposase

Similar MGE(s)


Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.

Detail Organism MGE type Related TA Genome accession Coordinates Mash
distance