MGE detailed information

MGE type: Integrative_Conjugative_Elements        MGE length: 132947 bp
Accession: NZ_CP120392        Location: 4113491..4246437         Organism: Salmonella enterica subsp. enterica serovar Typhi strain 2027-2019_CO_04_Copr1       Replicon: chromosome


Gene structure


The 5 kb flanking regions of this MGE are displayed.

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
PVA84_RS20310 (PVA84_20305) 4109290..4110591 + 1302 WP_000637594.1 anaerobic C4-dicarboxylate transporter DcuA -
PVA84_RS20315 (PVA84_20310) 4110712..4111059 + 348 WP_000887832.1 divalent cation tolerance protein CutA -
PVA84_RS20320 (PVA84_20315) 4111035..4112738 + 1704 WP_000068881.1 protein-disulfide reductase DsbD -
PVA84_RS20325 (PVA84_20320) 4112775..4113350 + 576 WP_001188506.1 transcriptional regulator -
PVA84_RS20335 (PVA84_20330) 4113701..4114960 + 1260 WP_000954536.1 Prophage integrase IntS ; Integrase Integrase
PVA84_RS20340 (PVA84_20335) 4115271..4116554 + 1284 WP_000975154.1 SH3 domain-containing protein -
PVA84_RS20345 (PVA84_20340) 4116639..4116908 + 270 Protein_3984 integrase -
PVA84_RS20350 (PVA84_20345) 4117535..4118317 - 783 WP_000511749.1 hypothetical protein ; Integrase Integrase
PVA84_RS20355 (PVA84_20350) 4118587..4118781 + 195 WP_162009227.1 hypothetical protein -
PVA84_RS20360 (PVA84_20355) 4119174..4119395 - 222 WP_000193665.1 helix-turn-helix transcriptional regulator -
PVA84_RS20365 (PVA84_20360) 4119392..4119853 - 462 WP_000246267.1 hypothetical protein -
PVA84_RS20370 (PVA84_20365) 4120400..4122073 + 1674 WP_010989301.1 hypothetical protein -
PVA84_RS20375 (PVA84_20370) 4122154..4124439 + 2286 WP_010989300.1 hypothetical protein -
PVA84_RS20380 (PVA84_20375) 4124743..4124994 + 252 WP_024131240.1 hypothetical protein -
PVA84_RS20385 (PVA84_20380) 4125076..4125528 + 453 WP_000434168.1 hypothetical protein -
PVA84_RS20390 (PVA84_20385) 4125708..4126196 - 489 WP_000622308.1 GNAT family N-acetyltransferase Toxin Detail
PVA84_RS20395 (PVA84_20390) 4126193..4126486 - 294 WP_001143724.1 DUF1778 domain-containing protein Antitoxin Detail
PVA84_RS20400 (PVA84_20395) 4126913..4127926 - 1014 WP_000449622.1 Tyrosine recombinase XerC ; Integrase Integrase
PVA84_RS20405 (PVA84_20400) 4128090..4129679 - 1590 WP_000488995.1 TraI domain-containing protein -
PVA84_RS20410 (PVA84_20405) 4129663..4131174 - 1512 WP_001120833.1 UvrD-helicase domain-containing protein -
PVA84_RS20415 (PVA84_20410) 4132028..4132567 + 540 WP_001210944.1 Vi polysaccharide biosynthesis regulator TviA -
PVA84_RS20420 (PVA84_20415) 4132812..4134089 + 1278 WP_000466893.1 UDP-N-acetyl-D-glucosamine 6-dehydrogenase VF
PVA84_RS20425 (PVA84_20420) 4134092..4135138 + 1047 WP_000127915.1 UDP-N-acetylglucosamine 4-epimerase VF
PVA84_RS20430 (PVA84_20425) 4135162..4137657 + 2496 WP_010989299.1 hypothetical protein VF
PVA84_RS20435 (PVA84_20430) 4137657..4139393 + 1737 WP_000632616.1 hypothetical protein VF
PVA84_RS20440 (PVA84_20435) 4139438..4140505 + 1068 WP_000720235.1 hypothetical protein VF
PVA84_RS20445 (PVA84_20440) 4140515..4141309 + 795 WP_001023498.1 hypothetical protein VF
PVA84_RS20450 (PVA84_20445) 4141335..4142030 + 696 WP_000467404.1 Polysialic acid transport ATP-binding protein KpsT VF
PVA84_RS20455 (PVA84_20450) 4142053..4143357 + 1305 WP_000431675.1 hypothetical protein VF
PVA84_RS20460 (PVA84_20455) 4143377..4145347 + 1971 WP_000052242.1 hypothetical protein VF
PVA84_RS20465 (PVA84_20460) 4145649..4146395 - 747 WP_000354257.1 class I SAM-dependent methyltransferase -
PVA84_RS20470 (PVA84_20465) 4146395..4147285 - 891 WP_001681808.1 class I SAM-dependent methyltransferase -
PVA84_RS20475 (PVA84_20470) 4147296..4147553 - 258 WP_001681810.1 YjhX family toxin -
PVA84_RS20480 (PVA84_20475) 4147855..4147965 - 111 Protein_4011 autoinducer 2 ABC transporter substrate-binding protein -
PVA84_RS20485 (PVA84_20480) 4148200..4148544 + 345 Protein_4012 translesion error-prone DNA polymerase V autoproteolytic subunit -
PVA84_RS20490 (PVA84_20485) 4148660..4149685 - 1026 WP_000027757.1 Tyrosine recombinase XerC ; Integrase Integrase
PVA84_RS20495 (PVA84_20490) 4149689..4150321 - 633 WP_000052560.1 helix-turn-helix domain-containing protein -
PVA84_RS20500 (PVA84_20495) 4150438..4150680 + 243 WP_000102106.1 Rha family transcriptional regulator -
PVA84_RS20505 (PVA84_20500) 4150713..4151222 + 510 WP_000460852.1 phage regulatory CII family protein -
PVA84_RS20510 (PVA84_20505) 4151230..4151430 + 201 WP_000956167.1 DUF2724 domain-containing protein -
PVA84_RS20515 (PVA84_20510) 4151394..4151735 + 342 WP_000963479.1 DUF5347 family protein -
PVA84_RS20520 (PVA84_20515) 4151803..4152036 + 234 WP_001244240.1 DUF2732 family protein -
PVA84_RS20525 (PVA84_20520) 4152036..4152263 + 228 WP_000785510.1 TraR/DksA family transcriptional regulator -
PVA84_RS20530 (PVA84_20525) 4152260..4152844 + 585 WP_001090717.1 exonuclease domain-containing protein -
PVA84_RS20535 (PVA84_20530) 4152841..4153701 + 861 WP_000104130.1 DNA adenine methylase -
PVA84_RS20540 (PVA84_20535) 4153692..4156161 + 2470 Protein_4023 replication endonuclease -
PVA84_RS20545 (PVA84_20540) 4156329..4156517 + 189 WP_001154438.1 hypothetical protein -
PVA84_RS20550 (PVA84_20545) 4156529..4156762 + 234 WP_001217561.1 DinI family protein -
PVA84_RS20555 (PVA84_20550) 4156858..4157076 + 219 WP_000835188.1 hypothetical protein -
PVA84_RS20560 (PVA84_20555) 4157086..4158150 + 1065 WP_000829584.1 hypothetical protein -
PVA84_RS20565 (PVA84_20560) 4158147..4159211 + 1065 WP_000789323.1 hypothetical protein -
PVA84_RS20570 (PVA84_20565) 4159231..4159926 + 696 WP_000080839.1 hypothetical protein -
PVA84_RS20575 (PVA84_20570) 4159975..4161018 - 1044 WP_001681813.1 phage portal protein -
PVA84_RS20580 (PVA84_20575) 4161018..4162784 - 1767 WP_001098453.1 terminase ATPase subunit family protein -
PVA84_RS20585 (PVA84_20580) 4162927..4163760 + 834 WP_000216272.1 GPO family capsid scaffolding protein -
PVA84_RS20590 (PVA84_20585) 4163777..4164841 + 1065 WP_000730751.1 phage major capsid protein, P2 family -
PVA84_RS20595 (PVA84_20590) 4164845..4165495 + 651 WP_000059175.1 terminase endonuclease subunit -
PVA84_RS20600 (PVA84_20595) 4165589..4166053 + 465 WP_000673540.1 head completion/stabilization protein -
PVA84_RS20605 (PVA84_20600) 4166053..4166256 + 204 WP_000868184.1 tail protein X -
PVA84_RS20610 (PVA84_20605) 4166260..4166475 + 216 WP_000171566.1 HP1 family phage holin -
PVA84_RS20615 (PVA84_20610) 4166456..4166965 + 510 WP_001097942.1 lysozyme -
PVA84_RS20620 (PVA84_20615) 4166970..4167347 + 378 WP_048663627.1 DNZ54_00345 family protein -
PVA84_RS20625 (PVA84_20620) 4167344..4167772 + 429 WP_024131238.1 Rz-like lysis system protein LysB -
PVA84_RS20630 (PVA84_20625) 4167657..4167905 + 249 WP_223229656.1 Rz1-like lysis system protein LysC -
PVA84_RS20635 (PVA84_20630) 4167868..4168299 + 432 WP_001039966.1 phage tail protein -
PVA84_RS20640 (PVA84_20635) 4168292..4168738 + 447 WP_000343944.1 phage virion morphogenesis protein -
PVA84_RS20645 (PVA84_20640) 4168807..4169385 + 579 WP_000993749.1 phage baseplate assembly protein V -
PVA84_RS20650 (PVA84_20645) 4169382..4169741 + 360 WP_000177408.1 GPW/gp25 family protein -
PVA84_RS20655 (PVA84_20650) 4169728..4170636 + 909 WP_000268327.1 baseplate assembly protein -
PVA84_RS20660 (PVA84_20655) 4170629..4171234 + 606 WP_001086816.1 phage tail protein I -
PVA84_RS20665 (PVA84_20660) 4171231..4172850 + 1620 WP_000104806.1 phage tail protein -
PVA84_RS20670 (PVA84_20665) 4172857..4173264 + 408 WP_000006337.1 tail fiber assembly protein -
PVA84_RS20675 (PVA84_20670) 4173462..4174184 - 723 WP_000161708.1 Guanine nucleotide exchange factor SopE VF
PVA84_RS20680 (PVA84_20675) 4174395..4174616 + 222 Protein_4051 helix-turn-helix domain-containing protein -
PVA84_RS20685 (PVA84_20680) 4174719..4175891 + 1173 WP_000046101.1 phage tail sheath protein -
PVA84_RS20690 (PVA84_20685) 4175901..4176416 + 516 WP_001207653.1 phage major tail tube protein -
PVA84_RS20695 (PVA84_20690) 4176471..4176773 + 303 WP_001280965.1 phage tail assembly protein -
PVA84_RS20700 (PVA84_20695) 4176788..4176907 + 120 WP_000763315.1 GpE family phage tail protein -
PVA84_RS20705 (PVA84_20700) 4176900..4179680 + 2781 WP_001282813.1 phage tail tape measure protein -
PVA84_RS20710 (PVA84_20705) 4179680..4180165 + 486 WP_000980405.1 phage tail protein -
PVA84_RS20715 (PVA84_20710) 4180162..4181262 + 1101 WP_001011750.1 phage late control D family protein -
PVA84_RS20720 (PVA84_20715) 4181330..4181548 + 219 WP_001775272.1 ogr/Delta-like zinc finger family protein -
PVA84_RS20725 (PVA84_20720) 4181635..4182012 - 378 WP_001039750.1 hypothetical protein -
PVA84_RS20730 (PVA84_20725) 4182146..4182232 + 87 Protein_4061 peptidase -
PVA84_RS20735 (PVA84_20730) 4182232..4183506 + 1275 WP_000457555.1 Y-family DNA polymerase -
PVA84_RS20740 (PVA84_20735) 4183638..4183907 + 270 WP_001222413.1 hypothetical protein -
PVA84_RS20745 (PVA84_20740) 4184007..4184333 - 327 WP_000911568.1 DUF3085 domain-containing protein -
PVA84_RS20750 (PVA84_20745) 4184408..4185307 - 900 WP_000022217.1 hypothetical protein -
PVA84_RS20755 (PVA84_20750) 4185381..4186289 - 909 WP_000881183.1 hypothetical protein -
PVA84_RS20760 (PVA84_20755) 4186361..4188310 - 1950 WP_001097965.1 zincin-like metallopeptidase domain-containing protein -
PVA84_RS20765 (PVA84_20760) 4188399..4188857 - 459 WP_000115421.1 hypothetical protein -
PVA84_RS20770 (PVA84_20765) 4188935..4189231 - 297 WP_000968700.1 hypothetical protein -
PVA84_RS20775 (PVA84_20770) 4189228..4189680 - 453 WP_000979718.1 hypothetical protein -
PVA84_RS20780 (PVA84_20775) 4189698..4189907 - 210 WP_000018145.1 hypothetical protein -
PVA84_RS20785 (PVA84_20780) 4190278..4190658 - 381 WP_001103837.1 hypothetical protein -
PVA84_RS20790 (PVA84_20785) 4190754..4191056 - 303 WP_001020123.1 hypothetical protein -
PVA84_RS20795 (PVA84_20790) 4191780..4192700 - 921 WP_000907593.1 hypothetical protein ; Integrase Integrase
PVA84_RS20800 (PVA84_20795) 4193966..4194508 + 543 WP_010989295.1 DUF1062 domain-containing protein -
PVA84_RS20805 (PVA84_20800) 4194719..4195360 - 642 WP_000502502.1 ParB N-terminal domain-containing protein -
PVA84_RS20810 (PVA84_20805) 4195345..4196592 - 1248 WP_050186976.1 phosphoadenosine phosphosulfate reductase -
PVA84_RS20815 (PVA84_20810) 4196880..4197239 + 360 WP_010989293.1 hypothetical protein -
PVA84_RS20820 (PVA84_20815) 4197463..4197852 + 390 WP_000993574.1 hypothetical protein -
PVA84_RS20825 (PVA84_20820) 4197888..4199393 - 1506 WP_000213770.1 conjugal transfer protein TraG N-terminal domain-containing protein -
PVA84_RS20830 (PVA84_20825) 4199726..4201123 - 1398 WP_014341560.1 integrating conjugative element protein -
PVA84_RS20835 (PVA84_20830) 4201171..4202139 - 969 WP_000838927.1 TIGR03756 family integrating conjugative element protein -
PVA84_RS20840 (PVA84_20835) 4202136..4202528 - 393 WP_000821941.1 TIGR03757 family integrating conjugative element protein -
PVA84_RS20845 (PVA84_20840) 4202683..4203069 - 387 WP_000054770.1 hypothetical protein -
PVA84_RS20850 (PVA84_20845) 4203224..4205906 - 2683 Protein_4085 conjugative transfer ATPase -
PVA84_RS20855 (PVA84_20850) 4206029..4206478 - 450 WP_000244536.1 TIGR03751 family conjugal transfer lipoprotein -
PVA84_RS20860 (PVA84_20855) 4206465..4207943 - 1479 WP_001165842.1 TIGR03752 family integrating conjugative element protein -
PVA84_RS20865 (PVA84_20860) 4207933..4208832 - 900 WP_001240640.1 TIGR03749 family integrating conjugative element protein -
PVA84_RS20870 (PVA84_20865) 4208832..4209485 - 654 WP_000086082.1 TIGR03746 family integrating conjugative element protein -
PVA84_RS20875 (PVA84_20870) 4209482..4209856 - 375 WP_000848326.1 TIGR03750 family conjugal transfer protein -
PVA84_RS20880 (PVA84_20875) 4209866..4210231 - 366 WP_223228898.1 TIGR03745 family integrating conjugative element membrane protein -
PVA84_RS20885 (PVA84_20880) 4210258..4210491 - 234 WP_015899494.1 TIGR03758 family integrating conjugative element protein -
PVA84_RS20890 (PVA84_20885) 4210497..4210751 - 255 WP_000252871.1 RAQPRD family integrative conjugative element protein -
PVA84_RS20895 (PVA84_20890) 4210988..4211746 - 759 WP_010989289.1 TIGR03747 family integrating conjugative element membrane protein -
PVA84_RS20900 (PVA84_20895) 4211743..4213833 - 2091 WP_000071290.1 type IV conjugative transfer system coupling protein TraD -
PVA84_RS20905 (PVA84_20900) 4213853..4214422 - 570 WP_000626967.1 restriction endonuclease -
PVA84_RS20910 (PVA84_20905) 4214432..4214932 - 501 WP_000253629.1 integrating conjugative element protein -
PVA84_RS20915 (PVA84_20910) 4214968..4215654 - 687 WP_000013624.1 hypothetical protein VF
PVA84_RS20920 (PVA84_20915) 4215633..4216373 - 741 WP_001768408.1 TIGR03759 family integrating conjugative element protein -
PVA84_RS20925 (PVA84_20920) 4216392..4217306 - 915 WP_000214158.1 hypothetical protein -
PVA84_RS20930 (PVA84_20925) 4217263..4217625 - 363 WP_001149494.1 hypothetical protein -
PVA84_RS20935 (PVA84_20930) 4217813..4218688 - 876 WP_000994659.1 hypothetical protein -
PVA84_RS20940 (PVA84_20935) 4218900..4219367 - 468 WP_000455463.1 hypothetical protein -
PVA84_RS20945 (PVA84_20940) 4219464..4220615 - 1152 WP_000089603.1 Tyrosine recombinase XerC ; Integrase Integrase
PVA84_RS20950 (PVA84_20945) 4220963..4222270 - 1308 WP_000744276.1 hypothetical protein VF
PVA84_RS20955 (PVA84_20950) 4222267..4222929 - 663 WP_000218700.1 hypothetical protein VF
PVA84_RS20960 (PVA84_20955) 4222926..4223369 - 444 WP_223228896.1 hypothetical protein VF
PVA84_RS20965 (PVA84_20960) 4223412..4224008 - 597 WP_024131234.1 hypothetical protein VF
PVA84_RS20970 (PVA84_20965) 4224047..4225132 - 1086 WP_000074784.1 hypothetical protein VF
PVA84_RS20975 (PVA84_20970) 4225129..4226844 - 1716 WP_001289222.1 hypothetical protein VF
PVA84_RS20980 (PVA84_20975) 4226854..4227234 - 381 WP_014341558.1 hypothetical protein VF
PVA84_RS20985 (PVA84_20980) 4227422..4228708 - 1287 WP_000763621.1 hypothetical protein VF
PVA84_RS20990 (PVA84_20985) 4228710..4229048 - 339 WP_048657783.1 Outer membrane lipoprotein BfpB VF
PVA84_RS20995 (PVA84_20990) 4229014..4229949 - 936 WP_049783585.1 hypothetical protein VF
PVA84_RS21000 (PVA84_20995) 4230420..4230839 - 420 WP_000539682.1 hypothetical protein VF
PVA84_RS21005 (PVA84_21000) 4230842..4232086 - 1245 WP_001095932.1 hypothetical protein VF
PVA84_RS21010 (PVA84_21005) 4232251..4233201 - 951 Protein_4117 ISNCY family transposase ISPlu22 VF
PVA84_RS21015 (PVA84_21010) 4233267..4233803 - 537 WP_000157067.1 single-stranded DNA-binding protein -
PVA84_RS21020 (PVA84_21015) 4233816..4234034 - 219 WP_000958171.1 hypothetical protein -
PVA84_RS21025 (PVA84_21020) 4234115..4234564 - 450 WP_000032521.1 STY4534 family ICE replication protein -
PVA84_RS21030 (PVA84_21025) 4235232..4237226 - 1995 WP_001241572.1 DNA topoisomerase III -
PVA84_RS21035 (PVA84_21030) 4237337..4238113 - 777 WP_001290445.1 TIGR03761 family integrating conjugative element protein -
PVA84_RS21040 (PVA84_21035) 4238702..4240012 - 1311 WP_001194350.1 STY4528 family pathogenicity island replication protein -
PVA84_RS21045 (PVA84_21040) 4240042..4240290 - 249 WP_000377625.1 hypothetical protein -
PVA84_RS21050 (PVA84_21045) 4240290..4240847 - 558 WP_000144322.1 DUF2857 domain-containing protein -
PVA84_RS21055 (PVA84_21050) 4240932..4241654 - 723 WP_001275616.1 DUF2786 domain-containing protein -
PVA84_RS21060 (PVA84_21055) 4241641..4241901 - 261 WP_000838568.1 hypothetical protein -
PVA84_RS21065 (PVA84_21060) 4242115..4243914 - 1800 WP_001029724.1 ParB family protein -
PVA84_RS21070 (PVA84_21065) 4243907..4245271 - 1365 WP_000018529.1 SPI-7-type island replicative DNA helicase -
PVA84_RS21075 (PVA84_21070) 4245268..4246302 - 1035 WP_001195363.1 hypothetical protein VF
PVA84_RS21080 (PVA84_21080) 4246970..4247047 + 78 Protein_4131 porin family protein -
PVA84_RS21085 (PVA84_21085) 4247147..4247899 + 753 WP_001785756.1 non-specific acid phosphatase -
PVA84_RS21090 (PVA84_21090) 4248140..4248631 - 492 WP_000626103.1 GNAT family N-acetyltransferase -
PVA84_RS21095 (PVA84_21095) 4248628..4248921 - 294 WP_001110456.1 DUF1778 domain-containing protein -
PVA84_RS21100 (PVA84_21100) 4249238..4249460 + 223 Protein_4135 hypothetical protein -
PVA84_RS21105 (PVA84_21105) 4249726..4250601 + 876 WP_000921674.1 AraC family transcriptional regulator -
PVA84_RS21110 (PVA84_21110) 4250598..4250885 + 288 WP_001269916.1 transcriptional regulator RtsB -
PVA84_RS21115 (PVA84_21115) 4250908..4251124 + 217 Protein_4138 hypothetical protein -

Similar MGE(s)


Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.

Detail Organism MGE type Related TA Genome accession Coordinates Mash
distance