MGE detailed information
MGE type: Prophage MGE length: 56425 bp
Accession: NZ_CP117698 Location: 1932708..1989132 Organism: Salmonella enterica subsp. enterica serovar London strain L1 Replicon: chromosome
Accession: NZ_CP117698 Location: 1932708..1989132 Organism: Salmonella enterica subsp. enterica serovar London strain L1 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| PRJ38_RS09200 () | 1927764..1928216 | + | 453 | WP_000653693.1 | dihydroneopterin triphosphate diphosphatase | - |
| PRJ38_RS09205 () | 1928246..1928986 | + | 741 | WP_000907242.1 | YebC/PmpR family DNA-binding transcriptional regulator | - |
| PRJ38_RS09210 () | 1929023..1929544 | + | 522 | WP_000022509.1 | crossover junction endodeoxyribonuclease RuvC | - |
| PRJ38_RS09215 () | 1929546..1930145 | - | 600 | WP_000716749.1 | YebB family permuted papain-like enzyme | - |
| PRJ38_RS09220 () | 1930772..1931668 | - | 897 | WP_001597478.1 | DUF4034 domain-containing protein | - |
| PRJ38_RS09225 () | 1932088..1932699 | + | 612 | WP_000580335.1 | Holliday junction branch migration protein RuvA | - |
| PRJ38_RS09230 () | 1932708..1933718 | + | 1011 | WP_000568504.1 | Holliday junction branch migration DNA helicase RuvB | - |
| PRJ38_RS09235 () | 1933797..1934582 | - | 786 | WP_000571510.1 | hypothetical protein | VF |
| PRJ38_RS09240 () | 1934579..1935334 | - | 756 | WP_000203023.1 | hypothetical protein | VF |
| PRJ38_RS09245 () | 1935413..1936357 | + | 945 | WP_058805642.1 | zinc ABC transporter substrate-binding protein ZnuA | - |
| PRJ38_RS09250 () | 1936373..1937692 | + | 1320 | WP_001184032.1 | murein DD-endopeptidase MepM | - |
| PRJ38_RS09255 () | 1937809..1938777 | + | 969 | WP_000448400.1 | hypothetical protein | VF |
| PRJ38_RS09265 () | 1940168..1941610 | - | 1443 | WP_000091156.1 | pyruvate kinase | - |
| PRJ38_RS09270 () | 1941734..1942603 | - | 870 | WP_001056720.1 | MurR/RpiR family transcriptional regulator | - |
| PRJ38_RS09275 () | 1942945..1944420 | + | 1476 | WP_000301711.1 | glucose-6-phosphate dehydrogenase | - |
| PRJ38_RS09280 () | 1944655..1946466 | + | 1812 | WP_001069113.1 | phosphogluconate dehydratase | - |
| PRJ38_RS09285 () | 1946504..1947145 | + | 642 | WP_000800495.1 | bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase | - |
| PRJ38_RS09290 () | 1947245..1948423 | - | 1179 | WP_058805752.1 | formate-dependent phosphoribosylglycinamide formyltransferase | - |
| PRJ38_RS09295 () | 1948554..1948844 | + | 291 | WP_000257723.1 | DNA damage-inducible protein YebG | - |
| PRJ38_RS09300 () | 1948912..1949265 | + | 354 | WP_001042123.1 | protein YebF | - |
| PRJ38_RS09305 () | 1949359..1950018 | + | 660 | WP_000024706.1 | tellurite resistance TerB family protein | - |
| PRJ38_RS09310 () | 1950231..1952282 | + | 2052 | WP_000936990.1 | oligopeptidase B | - |
| PRJ38_RS09315 () | 1952319..1953017 | - | 699 | WP_023255939.1 | exodeoxyribonuclease X | - |
| PRJ38_RS09320 () | 1953041..1953697 | - | 657 | WP_023245437.1 | carbon-nitrogen hydrolase family protein | - |
| PRJ38_RS09325 () | 1953805..1954035 | - | 231 | WP_000856224.1 | DNA polymerase III subunit theta | - |
| PRJ38_RS09330 () | 1954173..1954547 | + | 375 | WP_000168393.1 | CopC domain-containing protein YobA | - |
| PRJ38_RS09335 () | 1954548..1955423 | + | 876 | WP_000979694.1 | copper homeostasis membrane protein CopD | - |
| PRJ38_RS09340 () | 1955440..1955793 | + | 354 | WP_000722368.1 | YebY family protein | - |
| - | 1955895..1956038 | - | 144 | - | - | Antitoxin Detail |
| - | 1955934..1956036 | + | 103 | - | - | Toxin Detail |
| PRJ38_RS09345 () | 1956176..1957255 | - | 1080 | WP_058107134.1 | hypothetical protein ; Integrase | Integrase |
| PRJ38_RS09350 () | 1957288..1958439 | - | 1152 | Protein_1825 | PD-(D/E)XK nuclease-like domain-containing protein | - |
| PRJ38_RS09355 () | 1958428..1958619 | + | 192 | Protein_1826 | glycoside hydrolase family 19 protein | - |
| PRJ38_RS09360 () | 1958673..1959206 | + | 534 | WP_023256014.1 | DUF2514 domain-containing protein | - |
| PRJ38_RS09365 () | 1959463..1959630 | - | 168 | WP_000789530.1 | lytic enzyme | - |
| PRJ38_RS09370 () | 1959695..1959883 | - | 189 | WP_001034748.1 | hypothetical protein | - |
| PRJ38_RS09375 () | 1959938..1960198 | + | 261 | Protein_1830 | DUF1441 family protein | - |
| PRJ38_RS09380 () | 1960200..1960415 | + | 216 | Protein_1831 | shikimate transporter | - |
| PRJ38_RS09385 () | 1960425..1960712 | + | 288 | Protein_1832 | macro domain-containing protein | - |
| PRJ38_RS09390 () | 1960725..1961236 | + | 512 | Protein_1833 | tail fiber assembly protein | - |
| PRJ38_RS09395 () | 1961333..1961533 | - | 201 | WP_010989029.1 | PagK family vesicle-borne virulence factor | - |
| PRJ38_RS09400 () | 1961923..1962103 | - | 181 | Protein_1835 | IS3 family transposase | - |
| PRJ38_RS09405 () | 1962103..1962228 | + | 126 | WP_000457876.1 | hypothetical protein | - |
| PRJ38_RS09410 () | 1962742..1962888 | - | 147 | WP_001520350.1 | hypothetical protein | - |
| PRJ38_RS09415 () | 1962882..1963049 | + | 168 | WP_001751917.1 | helix-turn-helix domain-containing protein | - |
| PRJ38_RS09420 () | 1963376..1963990 | - | 615 | WP_000848069.1 | disulfide bond formation protein B | - |
| PRJ38_RS09425 () | 1964000..1964158 | - | 159 | WP_000480735.1 | DUF5993 family protein | - |
| PRJ38_RS09430 () | 1964291..1965205 | - | 915 | WP_001233445.1 | DMT family transporter | - |
| PRJ38_RS09435 () | 1966491..1966913 | - | 423 | Protein_1842 | hypothetical protein ; Integrase | Integrase |
| PRJ38_RS09440 () | 1966983..1968177 | + | 1195 | Protein_1843 | IS256 family transposase IS285 | Transposase |
| PRJ38_RS09445 () | 1968323..1968463 | - | 141 | WP_038390064.1 | hypothetical protein | - |
| PRJ38_RS09450 () | 1968629..1968898 | - | 270 | WP_077914367.1 | hypothetical protein | - |
| PRJ38_RS09455 () | 1969269..1969688 | + | 420 | WP_000354407.1 | GNAT family N-acetyltransferase | - |
| PRJ38_RS09460 () | 1970061..1970537 | - | 477 | WP_000030934.1 | hypothetical protein | - |
| PRJ38_RS09465 () | 1970867..1971262 | - | 396 | WP_000422882.1 | DUF1398 domain-containing protein | - |
| PRJ38_RS09470 () | 1971946..1972668 | + | 723 | WP_000182072.1 | hypothetical protein | VF |
| PRJ38_RS09475 () | 1972953..1973117 | + | 165 | WP_001134856.1 | membrane protein | - |
| PRJ38_RS09480 () | 1973341..1973991 | + | 651 | WP_000986176.1 | protein-serine/threonine phosphatase | - |
| PRJ38_RS09485 () | 1974010..1974201 | - | 192 | WP_000457836.1 | YebW family protein | - |
| PRJ38_RS09490 () | 1974312..1974548 | - | 237 | WP_024131108.1 | YebV family protein | - |
| PRJ38_RS09495 () | 1974666..1976105 | - | 1440 | WP_001531515.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| PRJ38_RS09500 () | 1976183..1978816 | - | 2634 | WP_001521100.1 | hypothetical protein | VF |
| PRJ38_RS09505 () | 1978785..1980068 | - | 1284 | WP_001207293.1 | membrane integrity lipid transport subunit YebS | - |
| PRJ38_RS09510 () | 1980197..1980694 | + | 498 | WP_058805750.1 | GAF domain-containing protein | - |
| PRJ38_RS09515 () | 1980792..1981478 | + | 687 | WP_000431401.1 | RNA chaperone ProQ | - |
| PRJ38_RS09520 () | 1981498..1983546 | + | 2049 | WP_001091234.1 | carboxy terminal-processing peptidase | - |
| PRJ38_RS09525 () | 1983739..1984620 | + | 882 | WP_000984498.1 | protease HtpX | - |
| PRJ38_RS09530 () | 1984668..1986041 | - | 1374 | WP_000416128.1 | MFS transporter | - |
| PRJ38_RS09535 () | 1986217..1987008 | + | 792 | WP_001262195.1 | DNA-binding transcriptional regulator KdgR | - |
| PRJ38_RS09540 () | 1987220..1987459 | - | 240 | WP_001236777.1 | invasion protein YobH | - |
| PRJ38_RS09545 () | 1987617..1987760 | + | 144 | WP_000714547.1 | PhoP/PhoQ regulator MgrB | - |
| PRJ38_RS09550 () | 1987831..1988118 | + | 288 | WP_001000660.1 | YebO family protein | - |
| PRJ38_RS09555 () | 1988767..1988910 | + | 144 | WP_001537930.1 | DUF2627 domain-containing protein | - |
| PRJ38_RS09560 () | 1988923..1989132 | + | 210 | WP_001062678.1 | transcription antiterminator/RNA stability regulator CspE | - |
| PRJ38_RS09565 () | 1989352..1991097 | + | 1746 | WP_000730326.1 | peptidoglycan glycosyltransferase FtsI | - |
| PRJ38_RS09570 () | 1991163..1991972 | + | 810 | WP_000010924.1 | 23S rRNA (guanine(745)-N(1))-methyltransferase | - |
| PRJ38_RS09575 () | 1991969..1992535 | - | 567 | WP_001518359.1 | manganese efflux pump MntP | - |
| PRJ38_RS09580 () | 1992945..1993403 | - | 459 | WP_000156274.1 | DUF986 family protein | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|