MGE detailed information
MGE type: Prophage MGE length: 32229 bp
Accession: NZ_CP117388 Location: 2013703..2045931 Organism: Salmonella enterica subsp. enterica serovar Uganda strain RM010 Replicon: chromosome
Accession: NZ_CP117388 Location: 2013703..2045931 Organism: Salmonella enterica subsp. enterica serovar Uganda strain RM010 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| PQQ04_RS09710 () | 2009976..2010617 | + | 642 | WP_000800495.1 | bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase | - |
| PQQ04_RS09715 () | 2010717..2011895 | - | 1179 | WP_000173418.1 | formate-dependent phosphoribosylglycinamide formyltransferase | - |
| PQQ04_RS09720 () | 2012026..2012316 | + | 291 | WP_000257723.1 | DNA damage-inducible protein YebG | - |
| PQQ04_RS09725 () | 2012384..2012737 | + | 354 | WP_001042123.1 | protein YebF | - |
| PQQ04_RS09730 () | 2012831..2013490 | + | 660 | WP_023243913.1 | tellurite resistance TerB family protein | - |
| PQQ04_RS09735 () | 2013703..2015754 | + | 2052 | WP_000936990.1 | oligopeptidase B | - |
| PQQ04_RS09740 () | 2015789..2016487 | - | 699 | WP_000944279.1 | exodeoxyribonuclease X | - |
| PQQ04_RS09745 () | 2016511..2017167 | - | 657 | WP_274895123.1 | carbon-nitrogen hydrolase family protein | - |
| PQQ04_RS09750 () | 2017275..2017505 | - | 231 | WP_000856224.1 | DNA polymerase III subunit theta | - |
| PQQ04_RS09755 () | 2017643..2018017 | + | 375 | WP_000168393.1 | CopC domain-containing protein YobA | - |
| PQQ04_RS09760 () | 2018018..2018893 | + | 876 | WP_000979694.1 | copper homeostasis membrane protein CopD | - |
| PQQ04_RS09765 () | 2018910..2019263 | + | 354 | WP_000722370.1 | YebY family protein | - |
| - | 2019365..2019508 | - | 144 | - | - | Antitoxin Detail |
| - | 2019403..2019506 | + | 104 | - | - | Toxin Detail |
| PQQ04_RS09770 () | 2019636..2020477 | - | 842 | Protein_1907 | tyrosine-type recombinase/integrase | - |
| PQQ04_RS09775 () | 2020568..2020924 | + | 357 | WP_000003145.1 | hypothetical protein | - |
| PQQ04_RS09780 () | 2020878..2021084 | + | 207 | Protein_1909 | phage tail protein | - |
| PQQ04_RS09785 () | 2021256..2021411 | + | 156 | Protein_1910 | phage tail protein | - |
| PQQ04_RS09790 () | 2021517..2021849 | + | 333 | WP_031609875.1 | DUF1353 domain-containing protein | - |
| PQQ04_RS09795 () | 2021898..2022007 | + | 110 | Protein_1912 | tail fiber assembly protein | - |
| PQQ04_RS09800 () | 2022098..2022283 | - | 186 | WP_012218702.1 | PagK family vesicle-borne virulence factor | - |
| PQQ04_RS09805 () | 2022526..2022723 | - | 198 | Protein_1914 | tail fiber assembly protein | - |
| PQQ04_RS09810 () | 2022719..2023489 | - | 771 | WP_001652627.1 | transporter substrate-binding domain-containing protein | - |
| PQQ04_RS09815 () | 2023980..2024108 | + | 129 | Protein_1916 | helix-turn-helix domain-containing protein | - |
| PQQ04_RS09820 () | 2024137..2024937 | - | 801 | WP_001536069.1 | hypothetical protein | - |
| PQQ04_RS09825 () | 2025891..2026970 | - | 1080 | WP_076741596.1 | hypothetical protein ; Integrase | Integrase |
| PQQ04_RS09830 () | 2027003..2028154 | - | 1152 | Protein_1919 | PD-(D/E)XK nuclease-like domain-containing protein | - |
| PQQ04_RS09835 () | 2028143..2028334 | + | 192 | Protein_1920 | glycoside hydrolase family 19 protein | - |
| PQQ04_RS09840 () | 2028388..2028921 | + | 534 | WP_001050883.1 | DUF2514 domain-containing protein | - |
| PQQ04_RS09845 () | 2029178..2029345 | - | 168 | WP_000789530.1 | lytic enzyme | - |
| PQQ04_RS09850 () | 2029653..2029913 | + | 261 | Protein_1923 | DUF1441 family protein | - |
| PQQ04_RS09855 () | 2029915..2030130 | + | 216 | Protein_1924 | shikimate transporter | - |
| PQQ04_RS09860 () | 2030128..2030472 | + | 345 | Protein_1925 | macro domain-containing protein | - |
| PQQ04_RS09865 () | 2030482..2030952 | + | 471 | Protein_1926 | tail fiber assembly protein | - |
| PQQ04_RS09870 () | 2031049..2031249 | - | 201 | WP_010989029.1 | PagK family vesicle-borne virulence factor | - |
| PQQ04_RS09875 () | 2031639..2031819 | - | 181 | Protein_1928 | IS3 family transposase | - |
| PQQ04_RS09880 () | 2031819..2031944 | + | 126 | WP_001652642.1 | hypothetical protein | - |
| PQQ04_RS09885 () | 2032458..2032604 | - | 147 | WP_001520350.1 | hypothetical protein | - |
| PQQ04_RS09890 () | 2032598..2032765 | + | 168 | WP_001751917.1 | helix-turn-helix domain-containing protein | - |
| PQQ04_RS09895 () | 2033092..2033706 | - | 615 | WP_000848069.1 | disulfide bond formation protein B | - |
| PQQ04_RS09900 () | 2033716..2033874 | - | 159 | WP_000480735.1 | DUF5993 family protein | - |
| PQQ04_RS09905 () | 2034007..2034921 | - | 915 | WP_001233454.1 | DMT family transporter | - |
| PQQ04_RS24050 () | 2036216..2036332 | - | 117 | WP_231919481.1 | integrase | - |
| PQQ04_RS09915 () | 2036708..2037903 | + | 1196 | Protein_1936 | IS256 family transposase | - |
| PQQ04_RS09920 () | 2038049..2038189 | - | 141 | WP_001617922.1 | hypothetical protein | - |
| PQQ04_RS09925 () | 2038355..2038624 | - | 270 | WP_001752421.1 | hypothetical protein | - |
| PQQ04_RS09930 () | 2038994..2039413 | + | 420 | WP_000354407.1 | GNAT family N-acetyltransferase | - |
| PQQ04_RS09935 () | 2039786..2040262 | - | 477 | WP_079798327.1 | hypothetical protein | - |
| PQQ04_RS09940 () | 2040591..2040986 | - | 396 | WP_000422889.1 | DUF1398 domain-containing protein | - |
| PQQ04_RS09945 () | 2041670..2042392 | + | 723 | WP_000182072.1 | Guanine nucleotide exchange factor sopE2 | VF |
| PQQ04_RS09950 () | 2042677..2042841 | + | 165 | WP_001134857.1 | hypothetical protein | - |
| PQQ04_RS09955 () | 2043065..2043715 | + | 651 | WP_000986174.1 | protein-serine/threonine phosphatase | - |
| PQQ04_RS09960 () | 2043734..2043925 | - | 192 | WP_000457838.1 | DUF1482 family protein | - |
| PQQ04_RS09965 () | 2044036..2044272 | - | 237 | WP_024131167.1 | YebV family protein | - |
| PQQ04_RS09970 () | 2044390..2045829 | - | 1440 | WP_274895124.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| PQQ04_RS09975 () | 2045907..2048540 | - | 2634 | WP_001529852.1 | PqiB family protein | - |
| PQQ04_RS09980 () | 2048509..2049792 | - | 1284 | WP_001207294.1 | membrane integrity lipid transport subunit YebS | - |
| PQQ04_RS09985 () | 2049921..2050418 | + | 498 | WP_001518229.1 | GAF domain-containing protein | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|