MGE detailed information
MGE type: Prophage MGE length: 59902 bp
Accession: NZ_CP117376 Location: 2025456..2085357 Organism: Salmonella enterica subsp. enterica serovar Newport strain RM041 Replicon: chromosome
Accession: NZ_CP117376 Location: 2025456..2085357 Organism: Salmonella enterica subsp. enterica serovar Newport strain RM041 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| PQQ16_RS09785 () | 2020582..2021103 | + | 522 | WP_000022509.1 | crossover junction endodeoxyribonuclease RuvC | - |
| PQQ16_RS09790 () | 2021105..2021704 | - | 600 | WP_000716750.1 | YebB family permuted papain-like enzyme | - |
| PQQ16_RS09795 () | 2021913..2022605 | + | 693 | WP_000227324.1 | hypothetical protein | - |
| PQQ16_RS09800 () | 2022965..2023576 | + | 612 | WP_000580335.1 | Holliday junction branch migration protein RuvA | - |
| PQQ16_RS09805 () | 2023585..2024595 | + | 1011 | WP_000568504.1 | Holliday junction branch migration DNA helicase RuvB | - |
| PQQ16_RS09810 () | 2024674..2025459 | - | 786 | WP_000571510.1 | zinc ABC transporter permease subunit ZnuB | - |
| PQQ16_RS09815 () | 2025456..2026211 | - | 756 | WP_000203023.1 | Zinc import ATP-binding protein ZnuC | VF |
| PQQ16_RS09820 () | 2026290..2027234 | + | 945 | WP_000939594.1 | zinc ABC transporter substrate-binding protein ZnuA | - |
| PQQ16_RS09825 () | 2027250..2028569 | + | 1320 | WP_001184031.1 | murein DD-endopeptidase MepM | - |
| PQQ16_RS09830 () | 2028686..2029657 | + | 972 | WP_000448401.1 | Lipid A biosynthesis myristoyltransferase | VF |
| PQQ16_RS09835 () | 2029730..2031172 | - | 1443 | WP_000091156.1 | pyruvate kinase | - |
| PQQ16_RS09840 () | 2031296..2032165 | - | 870 | WP_001056719.1 | MurR/RpiR family transcriptional regulator | - |
| PQQ16_RS09845 () | 2032507..2033982 | + | 1476 | WP_000301711.1 | glucose-6-phosphate dehydrogenase | - |
| PQQ16_RS09850 () | 2034217..2036028 | + | 1812 | WP_001069113.1 | phosphogluconate dehydratase | - |
| PQQ16_RS09855 () | 2036066..2036707 | + | 642 | WP_000800494.1 | bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase | - |
| PQQ16_RS09860 () | 2036807..2037985 | - | 1179 | WP_000173429.1 | formate-dependent phosphoribosylglycinamide formyltransferase | - |
| PQQ16_RS09865 () | 2038116..2038406 | + | 291 | WP_000257723.1 | DNA damage-inducible protein YebG | - |
| PQQ16_RS09870 () | 2038474..2038827 | + | 354 | WP_001042123.1 | protein YebF | - |
| PQQ16_RS09875 () | 2038921..2039580 | + | 660 | WP_000024706.1 | tellurite resistance TerB family protein | - |
| PQQ16_RS09880 () | 2039794..2041845 | + | 2052 | WP_000936997.1 | oligopeptidase B | - |
| PQQ16_RS09885 () | 2041882..2042580 | - | 699 | WP_000944285.1 | exodeoxyribonuclease X | - |
| PQQ16_RS09890 () | 2042604..2043260 | - | 657 | WP_000100249.1 | carbon-nitrogen hydrolase family protein | - |
| PQQ16_RS09895 () | 2043368..2043598 | - | 231 | WP_000856224.1 | DNA polymerase III subunit theta | - |
| PQQ16_RS09900 () | 2043736..2044110 | + | 375 | WP_000168395.1 | CopC domain-containing protein YobA | - |
| PQQ16_RS09905 () | 2044111..2044986 | + | 876 | WP_000979684.1 | copper homeostasis membrane protein CopD | - |
| PQQ16_RS09910 () | 2045003..2045356 | + | 354 | WP_000722368.1 | YebY family protein | - |
| - | 2045456..2045601 | - | 146 | - | - | Antitoxin Detail |
| - | 2045496..2045599 | + | 104 | - | - | Toxin Detail |
| PQQ16_RS09915 () | 2045729..2046808 | - | 1080 | WP_000087646.1 | hypothetical protein ; Integrase | Integrase |
| PQQ16_RS09920 () | 2046838..2047833 | - | 996 | Protein_1937 | PD-(D/E)XK nuclease-like domain-containing protein | - |
| PQQ16_RS09925 () | 2047981..2048229 | + | 249 | Protein_1938 | glycoside hydrolase family 19 protein | - |
| PQQ16_RS09930 () | 2048226..2048760 | + | 535 | Protein_1939 | DUF2514 domain-containing protein | - |
| PQQ16_RS09935 () | 2049017..2049184 | - | 168 | WP_000789530.1 | lytic enzyme | - |
| PQQ16_RS09940 () | 2049249..2049437 | - | 189 | WP_001521334.1 | hypothetical protein | - |
| PQQ16_RS09945 () | 2049492..2049752 | + | 261 | Protein_1942 | DUF1441 family protein | - |
| PQQ16_RS09950 () | 2049967..2050311 | + | 345 | Protein_1943 | macro domain-containing protein | - |
| PQQ16_RS09955 () | 2050321..2050791 | + | 471 | Protein_1944 | tail fiber assembly protein | - |
| PQQ16_RS09960 () | 2050888..2051088 | - | 201 | WP_031604217.1 | PagK family vesicle-borne virulence factor | - |
| PQQ16_RS09965 () | 2051477..2051657 | - | 181 | Protein_1946 | IS3 family transposase | - |
| PQQ16_RS09970 () | 2051657..2051782 | + | 126 | WP_000457876.1 | hypothetical protein | - |
| PQQ16_RS09975 () | 2052296..2052442 | - | 147 | WP_000951652.1 | hypothetical protein | - |
| PQQ16_RS09980 () | 2052436..2052603 | + | 168 | WP_001751917.1 | helix-turn-helix domain-containing protein | - |
| PQQ16_RS09985 () | 2052930..2053544 | - | 615 | WP_000848072.1 | disulfide bond formation protein B | - |
| PQQ16_RS09990 () | 2053554..2053712 | - | 159 | WP_000480735.1 | DUF5993 family protein | - |
| PQQ16_RS09995 () | 2053845..2054759 | - | 915 | WP_001233445.1 | DMT family transporter | - |
| PQQ16_RS10000 () | 2056054..2056476 | - | 423 | Protein_1953 | hypothetical protein ; Integrase | Integrase |
| PQQ16_RS10005 () | 2056546..2057740 | + | 1195 | Protein_1954 | IS256 family transposase IS285 | Transposase |
| PQQ16_RS10010 () | 2057886..2058026 | - | 141 | WP_001617922.1 | hypothetical protein | - |
| PQQ16_RS10015 () | 2058191..2058460 | - | 270 | WP_001752421.1 | hypothetical protein | - |
| PQQ16_RS10020 () | 2058830..2059249 | + | 420 | WP_000354410.1 | GNAT family N-acetyltransferase | - |
| PQQ16_RS10025 () | 2059484..2060575 | - | 1092 | Protein_1958 | lipopolysaccharide N-acetylglucosaminyltransferase | - |
| PQQ16_RS10030 () | 2061465..2062203 | - | 739 | Protein_1959 | hypothetical protein ; Integrase | Integrase |
| PQQ16_RS10035 () | 2062322..2063335 | - | 1014 | WP_023168584.1 | acyltransferase family protein | - |
| PQQ16_RS10040 () | 2064032..2064235 | - | 204 | WP_000774038.1 | hypothetical protein | VF |
| PQQ16_RS10045 () | 2064419..2064664 | - | 246 | WP_001051755.1 | hypothetical protein | - |
| PQQ16_RS10050 () | 2065863..2066072 | + | 210 | WP_000974708.1 | CZB domain-containing protein | - |
| PQQ16_RS10055 () | 2066300..2066776 | - | 477 | WP_000030945.1 | hypothetical protein | - |
| PQQ16_RS10060 () | 2067092..2067487 | - | 396 | WP_000422887.1 | DUF1398 domain-containing protein | - |
| PQQ16_RS10065 () | 2068171..2068893 | + | 723 | WP_000182072.1 | Guanine nucleotide exchange factor sopE2 | VF |
| PQQ16_RS10070 () | 2069178..2069342 | + | 165 | WP_001134856.1 | membrane protein | - |
| PQQ16_RS10075 () | 2069566..2070216 | + | 651 | WP_000986175.1 | protein-serine/threonine phosphatase | - |
| PQQ16_RS10080 () | 2070235..2070426 | - | 192 | WP_000457836.1 | YebW family protein | - |
| PQQ16_RS10085 () | 2070537..2070773 | - | 237 | WP_024131167.1 | YebV family protein | - |
| PQQ16_RS10090 () | 2070891..2072330 | - | 1440 | WP_001670762.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| PQQ16_RS10095 () | 2072408..2075041 | - | 2634 | WP_001521100.1 | Intermembrane transport protein YebT | VF |
| PQQ16_RS10100 () | 2075010..2076293 | - | 1284 | WP_001207294.1 | membrane integrity lipid transport subunit YebS | - |
| PQQ16_RS10105 () | 2076422..2076919 | + | 498 | WP_001518229.1 | GAF domain-containing protein | - |
| PQQ16_RS10110 () | 2077017..2077703 | + | 687 | WP_000431405.1 | RNA chaperone ProQ | - |
| PQQ16_RS10115 () | 2077723..2079771 | + | 2049 | WP_001091239.1 | carboxy terminal-processing peptidase | - |
| PQQ16_RS10120 () | 2079964..2080845 | + | 882 | WP_000984498.1 | protease HtpX | - |
| PQQ16_RS10125 () | 2080893..2082266 | - | 1374 | WP_000416146.1 | MFS transporter | - |
| PQQ16_RS10130 () | 2082442..2083233 | + | 792 | WP_001262195.1 | DNA-binding transcriptional regulator KdgR | - |
| PQQ16_RS10135 () | 2083445..2083684 | - | 240 | WP_001236777.1 | invasion protein YobH | - |
| PQQ16_RS10140 () | 2083842..2083985 | + | 144 | WP_000714547.1 | PhoP/PhoQ regulator MgrB | - |
| PQQ16_RS10145 () | 2084056..2084343 | + | 288 | WP_001000660.1 | YebO family protein | - |
| PQQ16_RS10150 () | 2084992..2085135 | + | 144 | WP_001537930.1 | DUF2627 domain-containing protein | - |
| PQQ16_RS10155 () | 2085148..2085357 | + | 210 | WP_001062678.1 | transcription antiterminator/RNA stability regulator CspE | - |
| PQQ16_RS10160 () | 2085577..2087322 | + | 1746 | WP_000730322.1 | peptidoglycan glycosyltransferase FtsI | - |
| PQQ16_RS10165 () | 2087388..2088197 | + | 810 | WP_000010923.1 | 23S rRNA (guanine(745)-N(1))-methyltransferase | - |
| PQQ16_RS10170 () | 2088194..2088760 | - | 567 | WP_001518359.1 | manganese efflux pump MntP | - |
| PQQ16_RS10175 () | 2089170..2089628 | - | 459 | WP_000156279.1 | DUF986 family protein | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|