MGE detailed information
MGE type: Prophage MGE length: 73768 bp
Accession: NZ_CP117373 Location: 2662382..2736149 Organism: Salmonella enterica subsp. enterica serovar Dublin strain RM043 Replicon: chromosome
Accession: NZ_CP117373 Location: 2662382..2736149 Organism: Salmonella enterica subsp. enterica serovar Dublin strain RM043 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| PQQ08_RS13115 () | 2657895..2658392 | - | 498 | WP_001518229.1 | GAF domain-containing protein | - |
| PQQ08_RS13120 () | 2658521..2659804 | + | 1284 | WP_001207294.1 | membrane integrity lipid transport subunit YebS | - |
| PQQ08_RS13125 () | 2659773..2662406 | + | 2634 | WP_274896582.1 | PqiB family protein | - |
| PQQ08_RS13130 () | 2662484..2663923 | + | 1440 | WP_001531515.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| PQQ08_RS13135 () | 2664041..2664277 | + | 237 | WP_024131108.1 | YebV family protein | - |
| PQQ08_RS13140 () | 2664388..2664579 | + | 192 | WP_000457838.1 | DUF1482 family protein | - |
| PQQ08_RS13145 () | 2664598..2665248 | - | 651 | WP_000986173.1 | protein-serine/threonine phosphatase | - |
| PQQ08_RS13150 () | 2665472..2665636 | - | 165 | WP_001134856.1 | membrane protein | - |
| PQQ08_RS13155 () | 2665921..2666643 | - | 723 | WP_000182072.1 | Guanine nucleotide exchange factor sopE2 | VF |
| PQQ08_RS13160 () | 2667327..2667668 | + | 342 | WP_001752424.1 | DUF1398 family protein | - |
| PQQ08_RS13165 () | 2668050..2668526 | + | 477 | WP_000030946.1 | hypothetical protein | - |
| PQQ08_RS13170 () | 2668899..2669318 | - | 420 | WP_000354407.1 | GNAT family N-acetyltransferase | - |
| PQQ08_RS13175 () | 2669688..2669957 | + | 270 | WP_001752421.1 | hypothetical protein | - |
| PQQ08_RS13180 () | 2670123..2670263 | + | 141 | WP_001617922.1 | hypothetical protein | - |
| PQQ08_RS13185 () | 2670409..2671603 | - | 1195 | Protein_2579 | IS256 family transposase IS285 | Transposase |
| PQQ08_RS24950 () | 2671979..2672095 | + | 117 | WP_231919481.1 | integrase | - |
| PQQ08_RS13195 () | 2673391..2674306 | + | 916 | Protein_2581 | DMT family transporter | - |
| PQQ08_RS13200 () | 2674439..2674597 | + | 159 | WP_000480735.1 | DUF5993 family protein | - |
| PQQ08_RS13205 () | 2674607..2675221 | + | 615 | WP_000848073.1 | disulfide bond formation protein B | - |
| PQQ08_RS13210 () | 2675548..2675715 | - | 168 | WP_001751917.1 | helix-turn-helix domain-containing protein | - |
| PQQ08_RS13215 () | 2676369..2676494 | - | 126 | WP_001574229.1 | hypothetical protein | - |
| PQQ08_RS13220 () | 2676494..2676673 | + | 180 | Protein_2586 | IS3 family transposase | - |
| PQQ08_RS13225 () | 2677062..2677262 | + | 201 | WP_001751604.1 | PagK family vesicle-borne virulence factor | - |
| PQQ08_RS13230 () | 2677359..2677834 | - | 476 | Protein_2588 | tail fiber assembly protein | - |
| PQQ08_RS13235 () | 2677851..2678186 | - | 336 | Protein_2589 | macro domain-containing protein | - |
| PQQ08_RS13240 () | 2678401..2678666 | - | 266 | Protein_2590 | DUF1441 family protein | - |
| PQQ08_RS13245 () | 2678721..2678912 | + | 192 | WP_001034751.1 | hypothetical protein | - |
| PQQ08_RS13250 () | 2678977..2679144 | + | 168 | WP_000789530.1 | lytic enzyme | - |
| PQQ08_RS13255 () | 2679401..2679934 | - | 534 | WP_000055326.1 | DUF2514 domain-containing protein | - |
| PQQ08_RS13260 () | 2679931..2680179 | - | 249 | Protein_2594 | glycoside hydrolase family 19 protein | - |
| PQQ08_RS13265 () | 2680327..2681322 | + | 996 | Protein_2595 | PD-(D/E)XK nuclease-like domain-containing protein | - |
| PQQ08_RS13270 () | 2681352..2682431 | + | 1080 | WP_000087644.1 | hypothetical protein ; Integrase | Integrase |
| PQQ08_RS13275 () | 2683385..2684185 | + | 801 | WP_001536069.1 | hypothetical protein | - |
| PQQ08_RS13280 () | 2684214..2684455 | - | 242 | Protein_2598 | recombinase family protein | - |
| PQQ08_RS13285 () | 2684665..2685387 | + | 723 | WP_000161701.1 | Guanine nucleotide exchange factor SopE | VF |
| PQQ08_RS13290 () | 2685589..2686158 | - | 570 | WP_000143180.1 | tail fiber assembly protein | - |
| PQQ08_RS13295 () | 2686158..2688575 | - | 2418 | WP_001574223.1 | prophage tail fiber N-terminal domain-containing protein | - |
| PQQ08_RS13300 () | 2688629..2688871 | - | 243 | WP_000178848.1 | hypothetical protein | - |
| PQQ08_RS13305 () | 2688910..2689773 | - | 864 | WP_072100756.1 | DUF1983 domain-containing protein | - |
| PQQ08_RS13310 () | 2689813..2692262 | - | 2450 | Protein_2604 | host specificity protein J | - |
| PQQ08_RS13315 () | 2692334..2693038 | - | 705 | WP_001576012.1 | tail assembly protein | - |
| PQQ08_RS13320 () | 2692942..2693673 | - | 732 | WP_000606352.1 | C40 family peptidase | - |
| PQQ08_RS13325 () | 2693683..2694378 | - | 696 | WP_001152416.1 | phage minor tail protein L | - |
| PQQ08_RS13330 () | 2694468..2695001 | + | 534 | WP_000877926.1 | Superoxide dismutase [Cu-Zn] 1 | VF |
| PQQ08_RS13335 () | 2695118..2695615 | - | 498 | WP_000725268.1 | Attachment invasion locus protein | VF |
| PQQ08_RS13340 () | 2695714..2696046 | - | 333 | WP_000978295.1 | phage tail protein | - |
| PQQ08_RS13345 () | 2696043..2699030 | - | 2988 | WP_077906652.1 | phage tail tape measure protein | - |
| PQQ08_RS13350 () | 2699110..2699439 | - | 330 | WP_010989009.1 | phage tail assembly protein T | - |
| PQQ08_RS13355 () | 2699436..2699834 | - | 399 | WP_000478858.1 | phage minor tail protein G | - |
| PQQ08_RS13360 () | 2699880..2700629 | - | 750 | WP_274896583.1 | phage tail protein | - |
| PQQ08_RS13365 () | 2700641..2701042 | - | 402 | WP_000196703.1 | phage minor tail U family protein | - |
| PQQ08_RS13370 () | 2701039..2701605 | - | 567 | WP_000453192.1 | phage tail protein | - |
| PQQ08_RS13375 () | 2701586..2701885 | - | 300 | WP_000774239.1 | ATP-binding protein | - |
| PQQ08_RS13380 () | 2701878..2702201 | - | 324 | WP_001107908.1 | DUF2190 family protein | - |
| PQQ08_RS13385 () | 2702292..2704373 | - | 2082 | WP_010989008.1 | ATP-dependent Clp protease proteolytic subunit | VF |
| PQQ08_RS13390 () | 2704297..2705844 | - | 1548 | WP_001009211.1 | phage portal protein | - |
| PQQ08_RS13395 () | 2705841..2706047 | - | 207 | WP_000196190.1 | hypothetical protein | - |
| PQQ08_RS13400 () | 2706044..2708182 | - | 2139 | WP_000989241.1 | phage terminase large subunit family protein | - |
| PQQ08_RS13405 () | 2708139..2708672 | - | 534 | WP_024139201.1 | DUF1441 family protein | - |
| PQQ08_RS13410 () | 2708880..2709359 | - | 480 | WP_001541990.1 | lysis protein | - |
| PQQ08_RS13415 () | 2709377..2709829 | - | 453 | WP_000984586.1 | glycoside hydrolase family protein | - |
| PQQ08_RS13420 () | 2709813..2710142 | - | 330 | WP_001574216.1 | phage holin, lambda family | - |
| PQQ08_RS13425 () | 2710418..2711104 | + | 687 | WP_001574215.1 | type III secretion system effector protease GtgA | - |
| PQQ08_RS13430 () | 2711465..2711914 | + | 450 | WP_000798708.1 | hypothetical protein | - |
| PQQ08_RS13435 () | 2712288..2712815 | - | 528 | WP_000971762.1 | hypothetical protein | - |
| PQQ08_RS13440 () | 2712909..2713598 | - | 690 | WP_001097218.1 | bacteriophage antitermination protein Q | - |
| PQQ08_RS13445 () | 2713595..2713731 | - | 137 | Protein_2631 | YlcG family protein | - |
| PQQ08_RS13450 () | 2713728..2713868 | - | 141 | Protein_2632 | recombination protein NinG | - |
| PQQ08_RS13455 () | 2713952..2714551 | - | 600 | WP_000940753.1 | DUF1367 family protein | - |
| PQQ08_RS13460 () | 2714615..2714833 | - | 219 | WP_001524708.1 | hypothetical protein | - |
| PQQ08_RS13465 () | 2715135..2715233 | - | 99 | WP_223151200.1 | hypothetical protein | - |
| PQQ08_RS13470 () | 2715552..2717531 | - | 1980 | WP_001237395.1 | alkyl sulfatase dimerization domain-containing protein | - |
| PQQ08_RS13475 () | 2717928..2719058 | + | 1131 | WP_000529512.1 | GGDEF domain-containing protein | - |
| PQQ08_RS13480 () | 2719345..2719740 | - | 396 | WP_000089417.1 | DUF977 family protein | - |
| PQQ08_RS13485 () | 2719753..2720295 | - | 543 | WP_158000546.1 | replication protein P | - |
| PQQ08_RS13490 () | 2720207..2721205 | - | 999 | WP_274896584.1 | DUF1376 domain-containing protein | - |
| PQQ08_RS13495 () | 2721252..2721746 | - | 495 | WP_001574210.1 | toxin YdaT family protein | - |
| PQQ08_RS13500 () | 2721733..2721987 | - | 255 | WP_001033912.1 | helix-turn-helix transcriptional regulator | - |
| PQQ08_RS13505 () | 2722086..2722484 | + | 399 | WP_001574209.1 | helix-turn-helix domain-containing protein | - |
| PQQ08_RS13510 () | 2722926..2723240 | - | 315 | WP_071591195.1 | hypothetical protein | - |
| PQQ08_RS13515 () | 2723502..2723777 | + | 276 | WP_000103933.1 | hypothetical protein | - |
| PQQ08_RS13520 () | 2723781..2723987 | + | 207 | WP_000682660.1 | cell division inhibitor protein | - |
| PQQ08_RS13525 () | 2724063..2724398 | + | 336 | WP_000799627.1 | hypothetical protein | - |
| PQQ08_RS13530 () | 2724539..2727229 | + | 2691 | WP_000023732.1 | exodeoxyribonuclease VIII | - |
| PQQ08_RS13535 () | 2727222..2728052 | + | 831 | WP_024139186.1 | recombination protein RecT | - |
| PQQ08_RS13540 () | 2728099..2728284 | + | 186 | WP_000280163.1 | DUF1187 family protein | - |
| PQQ08_RS13545 () | 2728383..2728811 | + | 429 | WP_000743301.1 | hypothetical protein | - |
| PQQ08_RS13550 () | 2728872..2729150 | + | 279 | WP_001675651.1 | excisionase | - |
| PQQ08_RS13555 () | 2729125..2730204 | + | 1080 | WP_076031669.1 | hypothetical protein ; Integrase | Integrase |
| - | 2730342..2730487 | + | 146 | - | - | Antitoxin Detail |
| - | 2730344..2730447 | - | 104 | - | - | Toxin Detail |
| PQQ08_RS13560 () | 2730587..2730940 | - | 354 | WP_000722368.1 | YebY family protein | - |
| PQQ08_RS13565 () | 2730957..2731832 | - | 876 | WP_000979703.1 | copper homeostasis membrane protein CopD | - |
| PQQ08_RS13570 () | 2731833..2732207 | - | 375 | WP_001751617.1 | CopC domain-containing protein YobA | - |
| PQQ08_RS13575 () | 2732345..2732575 | + | 231 | WP_000856224.1 | DNA polymerase III subunit theta | - |
| PQQ08_RS13580 () | 2732683..2733339 | + | 657 | WP_000100257.1 | carbon-nitrogen hydrolase family protein | - |
| PQQ08_RS13585 () | 2733363..2734061 | + | 699 | WP_000944287.1 | exodeoxyribonuclease X | - |
| PQQ08_RS13590 () | 2734098..2736149 | - | 2052 | WP_000936999.1 | oligopeptidase B | - |
| PQQ08_RS13595 () | 2736362..2737021 | - | 660 | WP_000024709.1 | tellurite resistance TerB family protein | - |
| PQQ08_RS13600 () | 2737115..2737468 | - | 354 | WP_001042123.1 | protein YebF | - |
| PQQ08_RS13605 () | 2737536..2737826 | - | 291 | WP_000257723.1 | DNA damage-inducible protein YebG | - |
| PQQ08_RS13610 () | 2737957..2739135 | + | 1179 | WP_000173430.1 | formate-dependent phosphoribosylglycinamide formyltransferase | - |
| PQQ08_RS13615 () | 2739235..2739876 | - | 642 | WP_000800494.1 | bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|