MGE detailed information
MGE type: Non-Mobilizable plasmid MGE length: 73152 bp
Accession: NZ_CP117369 Location: 1..73152 Organism: Salmonella enterica subsp. enterica serovar Dublin strain RM079 Replicon: plasmid pRM079_2
Accession: NZ_CP117369 Location: 1..73152 Organism: Salmonella enterica subsp. enterica serovar Dublin strain RM079 Replicon: plasmid pRM079_2
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| PQQ12_RS24990 (PQQ12_24990) | 1..882 | + | 882 | WP_001675606.1 | incFII family plasmid replication initiator RepA | - |
| PQQ12_RS24995 (PQQ12_24995) | 1677..2071 | - | 395 | Protein_1 | IS66 family transposase zinc-finger binding domain-containing protein | - |
| PQQ12_RS25000 (PQQ12_25000) | 2140..2274 | - | 135 | Protein_2 | IS66 family transposase ISEc8 | Transposase |
| PQQ12_RS25005 (PQQ12_25005) | 2429..2626 | - | 198 | WP_001675602.1 | transposase | - |
| PQQ12_RS25010 (PQQ12_25010) | 2921..3523 | - | 603 | WP_223151229.1 | hypothetical protein | - |
| PQQ12_RS25015 (PQQ12_25015) | 3751..4410 | - | 660 | WP_001575507.1 | hypothetical protein | - |
| PQQ12_RS25020 (PQQ12_25020) | 5868..6140 | + | 273 | WP_001178538.1 | hypothetical protein | - |
| PQQ12_RS25025 (PQQ12_25025) | 6376..7173 | + | 798 | WP_000704721.1 | hypothetical protein | VF |
| PQQ12_RS25030 (PQQ12_25030) | 7201..7965 | + | 765 | WP_000827659.1 | hypothetical protein | VF |
| PQQ12_RS25035 (PQQ12_25035) | 7952..8227 | + | 276 | WP_001020576.1 | hypothetical protein | - |
| PQQ12_RS25040 (PQQ12_25040) | 8227..8940 | + | 714 | WP_000801115.1 | hypothetical protein | VF |
| PQQ12_RS25045 (PQQ12_25045) | 9065..9649 | + | 585 | WP_001575501.1 | hypothetical protein | - |
| PQQ12_RS25050 (PQQ12_25050) | 9722..9934 | + | 213 | WP_000063794.1 | hypothetical protein | VF |
| PQQ12_RS25055 (PQQ12_25055) | 10195..10356 | + | 162 | WP_001816720.1 | hypothetical protein | - |
| PQQ12_RS25060 (PQQ12_25060) | 10382..11230 | + | 849 | WP_000175391.1 | SdiA-regulated domain-containing protein | - |
| PQQ12_RS25065 (PQQ12_25065) | 11800..12228 | - | 429 | WP_000812999.1 | type II toxin-antitoxin system VapC family toxin | Toxin Detail |
| PQQ12_RS25070 (PQQ12_25070) | 12225..12455 | - | 231 | WP_001261283.1 | type II toxin-antitoxin system VapB family antitoxin | Antitoxin Detail |
| PQQ12_RS25075 (PQQ12_25075) | 13200..13418 | + | 219 | WP_000813641.1 | type II toxin-antitoxin system antitoxin CcdA | Antitoxin Detail |
| PQQ12_RS25080 (PQQ12_25080) | 13420..13725 | + | 306 | WP_001159863.1 | type II toxin-antitoxin system toxin CcdB | Toxin Detail |
| PQQ12_RS25085 (PQQ12_25085) | 13727..14017 | + | 291 | WP_001266176.1 | hypothetical protein | - |
| PQQ12_RS25090 (PQQ12_25090) | 14014..14535 | + | 522 | WP_000198608.1 | hypothetical protein | - |
| PQQ12_RS25095 (PQQ12_25095) | 14570..15352 | + | 783 | WP_000082169.1 | site-specific integrase | - |
| PQQ12_RS25100 (PQQ12_25100) | 15361..16044 | + | 684 | WP_001751692.1 | Cyclic di-GMP phosphodiesterase PdeL | VF |
| PQQ12_RS25105 (PQQ12_25105) | 16098..16586 | + | 489 | WP_001075507.1 | CaiF/GrlA family transcriptional regulator | - |
| PQQ12_RS25110 (PQQ12_25110) | 16580..16916 | + | 337 | Protein_24 | hypothetical protein | - |
| PQQ12_RS25115 (PQQ12_25115) | 16907..17248 | + | 342 | Protein_25 | LysM peptidoglycan-binding domain-containing protein | - |
| PQQ12_RS25120 (PQQ12_25120) | 17143..17688 | + | 546 | WP_071591236.1 | inverse autotransporter beta domain-containing protein | - |
| PQQ12_RS25125 (PQQ12_25125) | 17755..18114 | - | 360 | WP_001675600.1 | IS200-IS605 family transposase ISEc46 | Transposase |
| PQQ12_RS25130 (PQQ12_25130) | 18171..18596 | + | 426 | WP_000064919.1 | IS200-IS605 family transposase ISEc46 | Transposase |
| PQQ12_RS25135 (PQQ12_25135) | 18723..19373 | - | 651 | WP_001575489.1 | SPI-2 type III secretion system effector cysteine hydrolase SpvD | - |
| PQQ12_RS25140 (PQQ12_25140) | 19634..20359 | - | 726 | WP_001122242.1 | MAPK phosphothreonine lyase | VF |
| PQQ12_RS25145 (PQQ12_25145) | 20640..22421 | - | 1782 | WP_001675599.1 | Mono(ADP-ribosyl)transferase SpvB | VF |
| PQQ12_RS25150 (PQQ12_25150) | 22473..22640 | - | 168 | WP_001526987.1 | hypothetical protein | - |
| PQQ12_RS25155 (PQQ12_25155) | 22603..23370 | - | 768 | WP_001575487.1 | virulence protein SpvA | - |
| PQQ12_RS25160 (PQQ12_25160) | 23544..23708 | - | 165 | WP_001576629.1 | glycoside hydrolase family protein | - |
| PQQ12_RS25165 (PQQ12_25165) | 23882..24775 | - | 894 | WP_000346692.1 | virulence genes transcriptional activator SpvR | - |
| PQQ12_RS25170 (PQQ12_25170) | 25382..26419 | + | 1038 | WP_001121398.1 | IS630 family transposase ISEc33 | Transposase |
| PQQ12_RS25175 (PQQ12_25175) | 26608..27633 | - | 1026 | WP_001576625.1 | ExeA family protein | - |
| PQQ12_RS25180 (PQQ12_25180) | 27566..28555 | - | 990 | Protein_38 | IS481 family transposase ISAzs36 | Transposase |
| PQQ12_RS25185 (PQQ12_25185) | 28599..29303 | - | 705 | WP_001067855.1 | IS6 family transposase IS26 | Transposase |
| PQQ12_RS25190 (PQQ12_25190) | 29610..29788 | + | 179 | Protein_40 | helix-turn-helix domain-containing protein | - |
| PQQ12_RS25195 (PQQ12_25195) | 29853..30557 | + | 705 | WP_001067855.1 | IS6 family transposase IS26 | Transposase |
| PQQ12_RS25200 (PQQ12_25200) | 30714..31829 | + | 1116 | WP_001247118.1 | DNA-binding protein | - |
| PQQ12_RS25205 (PQQ12_25205) | 31915..32331 | + | 417 | WP_001541564.1 | hypothetical protein | - |
| PQQ12_RS25210 (PQQ12_25210) | 32434..32850 | + | 417 | WP_000988946.1 | hypothetical protein | - |
| PQQ12_RS25215 (PQQ12_25215) | 32907..33508 | + | 602 | Protein_45 | DUF2913 family protein | - |
| PQQ12_RS25220 (PQQ12_25220) | 33505..34447 | - | 943 | Protein_46 | ISNCY family transposase ISSen7 | VF |
| PQQ12_RS25225 (PQQ12_25225) | 34840..35460 | + | 621 | WP_000864788.1 | ParA family protein | - |
| PQQ12_RS25230 (PQQ12_25230) | 35512..35742 | + | 231 | WP_000051066.1 | plasmid partition protein ParG | - |
| PQQ12_RS25235 (PQQ12_25235) | 36381..36734 | - | 354 | WP_001675596.1 | DNA distortion polypeptide 3 | - |
| PQQ12_RS25240 (PQQ12_25240) | 36871..37317 | - | 447 | WP_001074381.1 | hypothetical protein | - |
| PQQ12_RS25245 (PQQ12_25245) | 37357..38193 | - | 837 | WP_001575533.1 | replication initiation protein | - |
| PQQ12_RS25250 (PQQ12_25250) | 39429..39680 | + | 252 | WP_000121743.1 | plasmid stabilization protein | Antitoxin Detail |
| PQQ12_RS25255 (PQQ12_25255) | 39670..39951 | + | 282 | WP_000220560.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin Detail |
| PQQ12_RS25260 (PQQ12_25260) | 40097..40420 | + | 324 | WP_001181909.1 | hypothetical protein | - |
| PQQ12_RS25265 (PQQ12_25265) | 40465..40710 | + | 246 | WP_000356542.1 | hypothetical protein | - |
| PQQ12_RS25270 (PQQ12_25270) | 40700..40915 | + | 216 | WP_001180117.1 | hypothetical protein | - |
| PQQ12_RS25275 (PQQ12_25275) | 41008..41337 | + | 330 | WP_000866650.1 | hypothetical protein | - |
| PQQ12_RS25280 (PQQ12_25280) | 41380..41559 | + | 180 | WP_001575529.1 | hypothetical protein | - |
| PQQ12_RS25285 (PQQ12_25285) | 41581..41778 | + | 198 | WP_001675595.1 | hypothetical protein | - |
| PQQ12_RS25290 (PQQ12_25290) | 41791..42063 | + | 273 | WP_000160399.1 | hypothetical protein | - |
| PQQ12_RS25295 (PQQ12_25295) | 42389..42934 | + | 546 | WP_000757691.1 | DNA distortion polypeptide 1 | - |
| PQQ12_RS25300 (PQQ12_25300) | 42937..44118 | + | 1182 | WP_000539536.1 | hypothetical protein | Relaxase |
| PQQ12_RS25305 (PQQ12_25305) | 44464..44982 | + | 519 | WP_001675951.1 | transcription termination/antitermination NusG family protein | - |
| PQQ12_RS25310 (PQQ12_25310) | 44912..45124 | + | 213 | WP_000125172.1 | hypothetical protein | - |
| PQQ12_RS25315 (PQQ12_25315) | 45157..45804 | + | 648 | WP_000953526.1 | hypothetical protein | VF |
| PQQ12_RS25320 (PQQ12_25320) | 45782..46078 | + | 297 | WP_000916182.1 | TrbC/VirB2 family protein | - |
| PQQ12_RS25325 (PQQ12_25325) | 46097..48850 | + | 2754 | WP_001675613.1 | Type IV secretion system protein virB4 | VF |
| PQQ12_RS25330 (PQQ12_25330) | 48861..49619 | + | 759 | WP_000744198.1 | type IV secretion system protein | - |
| PQQ12_RS25335 (PQQ12_25335) | 49620..49847 | + | 228 | WP_000835348.1 | EexN family lipoprotein | - |
| PQQ12_RS25340 (PQQ12_25340) | 49857..50990 | + | 1134 | WP_000513456.1 | type IV secretion system protein | - |
| PQQ12_RS25345 (PQQ12_25345) | 51117..51245 | + | 129 | WP_001328099.1 | hypothetical protein | - |
| PQQ12_RS25350 (PQQ12_25350) | 51235..51948 | + | 714 | WP_000394613.1 | type IV secretion system protein | - |
| PQQ12_RS25355 (PQQ12_25355) | 51953..52882 | + | 930 | WP_000783377.1 | TrbG/VirB9 family P-type conjugative transfer protein | - |
| PQQ12_RS25360 (PQQ12_25360) | 52879..54084 | + | 1206 | WP_000139139.1 | hypothetical protein | VF |
| PQQ12_RS25365 (PQQ12_25365) | 54086..55116 | + | 1031 | Protein_75 | Type IV secretion system protein VirB11 | VF |
| PQQ12_RS25370 (PQQ12_25370) | 55119..56954 | + | 1836 | WP_000053823.1 | type IV secretory system conjugative DNA transfer family protein | - |
| PQQ12_RS25375 (PQQ12_25375) | 56951..57364 | + | 414 | WP_001575522.1 | cag pathogenicity island Cag12 family protein | - |
| PQQ12_RS25380 (PQQ12_25380) | 57361..57663 | + | 303 | WP_015059377.1 | TrbM/KikA/MpfK family conjugal transfer protein | - |
| PQQ12_RS25385 (PQQ12_25385) | 57776..57970 | + | 195 | Protein_79 | ATP-binding protein | - |
| PQQ12_RS25390 (PQQ12_25390) | 57974..58549 | + | 576 | WP_001198970.1 | hypothetical protein | - |
| PQQ12_RS25395 (PQQ12_25395) | 58554..60707 | + | 2154 | WP_001235753.1 | type IA DNA topoisomerase | - |
| PQQ12_RS25400 (PQQ12_25400) | 60704..60910 | + | 207 | WP_000850859.1 | hemolysin expression modulator Hha | - |
| PQQ12_RS25405 (PQQ12_25405) | 60926..61360 | + | 435 | WP_001293135.1 | H-NS family nucleoid-associated regulatory protein | - |
| PQQ12_RS25410 (PQQ12_25410) | 62023..62508 | + | 486 | WP_001281416.1 | Abi family protein | - |
| PQQ12_RS25415 (PQQ12_25415) | 62667..63794 | - | 1128 | WP_000156234.1 | hypothetical protein | - |
| PQQ12_RS25420 (PQQ12_25420) | 64620..64715 | + | 96 | WP_000609147.1 | DinQ-like type I toxin DqlB | - |
| PQQ12_RS25425 (PQQ12_25425) | 64872..65516 | - | 645 | WP_000203397.1 | Tn3 family transposase TnpR_TnEc1 | Transposase |
| PQQ12_RS25430 (PQQ12_25430) | 65590..69846 | + | 4257 | Protein_88 | Multifunctional conjugation protein TraI | Relaxase |
| PQQ12_RS25435 (PQQ12_25435) | 69866..70606 | + | 741 | WP_000177628.1 | conjugal transfer pilus acetylase TraX | - |
| PQQ12_RS25440 (PQQ12_25440) | 70661..71224 | + | 564 | WP_000129019.1 | fertility inhibition protein FinO | - |
| PQQ12_RS25445 (PQQ12_25445) | 71341..71622 | + | 282 | Protein_91 | disulfide bond formation protein DsbA | - |
| PQQ12_RS25450 (PQQ12_25450) | 71903..72470 | + | 568 | Protein_92 | phospholipase D family protein | - |
| PQQ12_RS25455 (PQQ12_25455) | 72581..72847 | + | 267 | WP_001576653.1 | replication regulatory protein RepA | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|