MGE detailed information
MGE type: Conjugative plasmid MGE length: 107978 bp
Accession: NZ_CP117368 Location: 1..107978 Organism: Salmonella enterica subsp. enterica serovar Dublin strain RM079 Replicon: plasmid pRM079_1
Accession: NZ_CP117368 Location: 1..107978 Organism: Salmonella enterica subsp. enterica serovar Dublin strain RM079 Replicon: plasmid pRM079_1
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| PQQ12_RS24310 (PQQ12_24310) | 1..1101 | + | 1101 | WP_000350011.1 | RepB family plasmid replication initiator protein | - |
| PQQ12_RS24315 (PQQ12_24315) | 2138..2572 | - | 435 | WP_000883925.1 | hypothetical protein | - |
| PQQ12_RS24320 (PQQ12_24320) | 2590..3705 | - | 1116 | WP_000946102.1 | phosphoadenosine phosphosulfate reductase family protein | - |
| PQQ12_RS24325 (PQQ12_24325) | 3974..4582 | + | 609 | WP_000849071.1 | hypothetical protein | - |
| PQQ12_RS24330 (PQQ12_24330) | 4587..5108 | + | 522 | WP_000393785.1 | hypothetical protein | - |
| PQQ12_RS24335 (PQQ12_24335) | 5111..5632 | + | 522 | WP_000805800.1 | hypothetical protein | - |
| PQQ12_RS24340 (PQQ12_24340) | 5729..6202 | + | 474 | WP_000057877.1 | hypothetical protein | - |
| PQQ12_RS24345 (PQQ12_24345) | 6213..6506 | + | 294 | WP_001370730.1 | hypothetical protein | - |
| PQQ12_RS24350 (PQQ12_24350) | 6511..7365 | + | 855 | WP_000539392.1 | hypothetical protein | - |
| PQQ12_RS24355 (PQQ12_24355) | 7365..8324 | + | 960 | WP_000829616.1 | S49 family peptidase | - |
| PQQ12_RS24360 (PQQ12_24360) | 8340..9200 | + | 861 | WP_000139698.1 | DsbA family protein | - |
| PQQ12_RS24365 (PQQ12_24365) | 9234..9662 | + | 429 | WP_000591074.1 | hypothetical protein | - |
| PQQ12_RS24370 (PQQ12_24370) | 9719..10078 | + | 360 | WP_000422768.1 | hypothetical protein | - |
| PQQ12_RS24375 (PQQ12_24375) | 10078..10524 | + | 447 | WP_000919345.1 | Fe3+-siderophore ABC transporter permease | - |
| PQQ12_RS24380 (PQQ12_24380) | 10521..11039 | + | 519 | WP_000210756.1 | nitrite reductase | - |
| PQQ12_RS24385 (PQQ12_24385) | 11039..11269 | + | 231 | WP_000972663.1 | hypothetical protein | - |
| PQQ12_RS24390 (PQQ12_24390) | 11256..12113 | + | 858 | WP_001167032.1 | hypothetical protein | - |
| PQQ12_RS24395 (PQQ12_24395) | 12344..12871 | + | 528 | WP_001236377.1 | thermonuclease family protein | - |
| PQQ12_RS24400 (PQQ12_24400) | 12929..13201 | + | 273 | WP_001043047.1 | HU family DNA-binding protein | - |
| PQQ12_RS24405 (PQQ12_24405) | 13289..13582 | + | 294 | WP_001239997.1 | chromosome segregation protein ParM | - |
| PQQ12_RS24410 (PQQ12_24410) | 13609..13911 | - | 303 | WP_000124640.1 | XRE family transcriptional regulator | Antitoxin Detail |
| PQQ12_RS24415 (PQQ12_24415) | 13916..14266 | - | 351 | WP_000270043.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin Detail |
| PQQ12_RS24420 (PQQ12_24420) | 14429..14977 | + | 549 | WP_001061574.1 | transcriptional regulator | - |
| PQQ12_RS24425 (PQQ12_24425) | 15318..15512 | + | 195 | WP_000343597.1 | hypothetical protein | - |
| PQQ12_RS24430 (PQQ12_24430) | 15523..15894 | + | 372 | WP_000516916.1 | hypothetical protein | - |
| PQQ12_RS24435 (PQQ12_24435) | 15887..16357 | + | 471 | WP_001281821.1 | hypothetical protein | - |
| PQQ12_RS24440 (PQQ12_24440) | 16372..16707 | - | 336 | WP_000683476.1 | hypothetical protein | - |
| PQQ12_RS24445 (PQQ12_24445) | 16804..17292 | + | 489 | WP_001273096.1 | DUF1643 domain-containing protein | - |
| PQQ12_RS24450 (PQQ12_24450) | 17295..17792 | + | 498 | WP_000062185.1 | hypothetical protein | - |
| PQQ12_RS24455 (PQQ12_24455) | 18007..18711 | - | 705 | WP_001067855.1 | IS6 family transposase IS26 | Transposase |
| PQQ12_RS24460 (PQQ12_24460) | 18776..18955 | - | 180 | Protein_31 | helix-turn-helix domain-containing protein | - |
| PQQ12_RS24465 (PQQ12_24465) | 18970..19236 | - | 267 | WP_274892066.1 | hypothetical protein | - |
| PQQ12_RS24470 (PQQ12_24470) | 19261..19965 | + | 705 | WP_001067855.1 | IS6 family transposase IS26 | Transposase |
| PQQ12_RS24475 (PQQ12_24475) | 20180..20668 | + | 489 | WP_001135407.1 | hypothetical protein | - |
| PQQ12_RS24480 (PQQ12_24480) | 21323..22063 | + | 741 | WP_001541566.1 | carbonic anhydrase family protein | - |
| PQQ12_RS24485 (PQQ12_24485) | 22270..22830 | + | 561 | WP_001240330.1 | Tn3 family transposase TnBth3 | Transposase |
| PQQ12_RS24490 (PQQ12_24490) | 22814..23506 | + | 693 | Protein_37 | IS481 family transposase ISAzs36 | Transposase |
| PQQ12_RS24495 (PQQ12_24495) | 23569..24273 | + | 705 | WP_001067855.1 | IS6 family transposase IS26 | Transposase |
| PQQ12_RS24500 (PQQ12_24500) | 24279..24419 | + | 141 | WP_001044210.1 | hypothetical protein | - |
| PQQ12_RS24505 (PQQ12_24505) | 24905..25642 | + | 738 | WP_001366550.1 | Tn3 family transposase TnpR_TnEc1 | Transposase |
| PQQ12_RS24510 (PQQ12_24510) | 25639..25863 | + | 225 | WP_000743213.1 | hypothetical protein | - |
| PQQ12_RS24515 (PQQ12_24515) | 26074..27567 | + | 1494 | WP_001120888.1 | IS91 family transposase ISVsa3 | Transposase |
| PQQ12_RS24520 (PQQ12_24520) | 27598..28482 | + | 885 | WP_012728215.1 | DUF3363 domain-containing protein | - |
| PQQ12_RS24525 (PQQ12_24525) | 28699..29913 | + | 1215 | WP_012728216.1 | Bicyclomycin resistance protein | ARG |
| PQQ12_RS24530 (PQQ12_24530) | 29941..30246 | + | 306 | WP_001255015.1 | HTH-type transcriptional regulator CynR | VF |
| PQQ12_RS24535 (PQQ12_24535) | 30358..30546 | + | 189 | Protein_46 | IS91 family transposase | - |
| PQQ12_RS24540 (PQQ12_24540) | 30513..31712 | - | 1200 | WP_000804063.1 | Tetracycline resistance protein, class C | ARG |
| PQQ12_RS24545 (PQQ12_24545) | 31818..32468 | + | 651 | WP_000164043.1 | tetracycline resistance transcriptional repressor TetR(A) | - |
| PQQ12_RS24550 (PQQ12_24550) | 32500..32742 | - | 243 | WP_000844627.1 | transposase | - |
| PQQ12_RS24555 (PQQ12_24555) | 33048..33884 | - | 837 | WP_000480968.1 | hypothetical protein | ARG |
| PQQ12_RS24560 (PQQ12_24560) | 33884..34687 | - | 804 | WP_001082319.1 | Aminoglycoside 3'-phosphotransferase | ARG |
| PQQ12_RS24565 (PQQ12_24565) | 34748..35563 | - | 816 | WP_001043260.1 | Dihydropteroate synthase | ARG |
| PQQ12_RS24570 (PQQ12_24570) | 35870..36181 | + | 312 | WP_000338945.1 | hypothetical protein | - |
| PQQ12_RS24575 (PQQ12_24575) | 36355..37140 | + | 786 | WP_001151304.1 | Sporulation initiation inhibitor protein Soj | VF |
| PQQ12_RS24580 (PQQ12_24580) | 37144..38325 | + | 1182 | WP_001207227.1 | KorB domain-containing protein | - |
| PQQ12_RS24585 (PQQ12_24585) | 38374..38646 | + | 273 | WP_000703827.1 | helix-turn-helix domain-containing protein | - |
| PQQ12_RS24590 (PQQ12_24590) | 38699..39334 | - | 636 | WP_000074431.1 | N-6 DNA methylase | - |
| PQQ12_RS24595 (PQQ12_24595) | 39426..39569 | - | 144 | WP_000939033.1 | hypothetical protein | - |
| PQQ12_RS24600 (PQQ12_24600) | 39896..40273 | + | 378 | WP_001125904.1 | hypothetical protein | - |
| PQQ12_RS24605 (PQQ12_24605) | 40266..40547 | + | 282 | WP_000044823.1 | hypothetical protein | - |
| PQQ12_RS24610 (PQQ12_24610) | 40522..41196 | + | 675 | WP_000344149.1 | hypothetical protein | - |
| PQQ12_RS24615 (PQQ12_24615) | 41189..41695 | + | 507 | WP_000566443.1 | hypothetical protein | - |
| PQQ12_RS24620 (PQQ12_24620) | 41701..42012 | + | 312 | WP_001447539.1 | hypothetical protein | - |
| PQQ12_RS24625 (PQQ12_24625) | 42021..42521 | + | 501 | WP_000647188.1 | hypothetical protein | - |
| PQQ12_RS24630 (PQQ12_24630) | 42525..43952 | + | 1428 | WP_000936897.1 | DNA cytosine methyltransferase | - |
| PQQ12_RS24635 (PQQ12_24635) | 43952..44608 | + | 657 | WP_000268552.1 | hypothetical protein | - |
| PQQ12_RS24640 (PQQ12_24640) | 44664..45281 | + | 618 | WP_000464630.1 | hypothetical protein | - |
| PQQ12_RS24645 (PQQ12_24645) | 45514..45792 | + | 279 | WP_000746034.1 | hypothetical protein | - |
| PQQ12_RS24650 (PQQ12_24650) | 45883..46371 | - | 489 | WP_000467110.1 | hypothetical protein | - |
| PQQ12_RS24655 (PQQ12_24655) | 46386..48578 | - | 2193 | WP_000366823.1 | DNA topoisomerase 3 | - |
| PQQ12_RS24660 (PQQ12_24660) | 48578..48811 | - | 234 | WP_001191890.1 | hypothetical protein | - |
| PQQ12_RS24665 (PQQ12_24665) | 48793..49410 | - | 618 | WP_001249395.1 | hypothetical protein | - |
| PQQ12_RS24670 (PQQ12_24670) | 49578..52550 | + | 2973 | WP_001326173.1 | hypothetical protein | Relaxase |
| PQQ12_RS24675 (PQQ12_24675) | 52547..54412 | + | 1866 | WP_077779971.1 | conjugative transfer system coupling protein TraD | - |
| PQQ12_RS24680 (PQQ12_24680) | 54462..55007 | + | 546 | WP_000228720.1 | hypothetical protein | - |
| PQQ12_RS24685 (PQQ12_24685) | 54964..55593 | + | 630 | WP_000743449.1 | DUF4400 domain-containing protein | - |
| PQQ12_RS24690 (PQQ12_24690) | 55603..56049 | + | 447 | WP_000122507.1 | hypothetical protein | - |
| PQQ12_RS24695 (PQQ12_24695) | 56059..56436 | + | 378 | WP_000869297.1 | hypothetical protein | - |
| PQQ12_RS24700 (PQQ12_24700) | 56436..57098 | + | 663 | WP_001231464.1 | hypothetical protein | - |
| PQQ12_RS24705 (PQQ12_24705) | 57434..57799 | + | 366 | WP_001052530.1 | hypothetical protein | - |
| PQQ12_RS24710 (PQQ12_24710) | 57944..58225 | + | 282 | WP_000805625.1 | type IV conjugative transfer system protein TraL | - |
| PQQ12_RS24715 (PQQ12_24715) | 58222..58848 | + | 627 | WP_001049717.1 | TraE/TraK family type IV conjugative transfer system protein | - |
| PQQ12_RS24720 (PQQ12_24720) | 58832..59749 | + | 918 | WP_000794249.1 | type-F conjugative transfer system secretin TraK | - |
| PQQ12_RS24725 (PQQ12_24725) | 59749..61062 | + | 1314 | WP_024131605.1 | TraB/VirB10 family protein | - |
| PQQ12_RS24730 (PQQ12_24730) | 61059..61637 | + | 579 | WP_000793435.1 | type IV conjugative transfer system lipoprotein TraV | - |
| PQQ12_RS24735 (PQQ12_24735) | 61641..62033 | + | 393 | WP_000479535.1 | TraA family conjugative transfer protein | - |
| PQQ12_RS24740 (PQQ12_24740) | 62318..63580 | + | 1263 | WP_000608644.1 | IS1380 family transposase ISEcp1 | Transposase |
| PQQ12_RS24745 (PQQ12_24745) | 63904..65049 | + | 1146 | WP_000976514.1 | Beta-lactamase | ARG |
| PQQ12_RS24750 (PQQ12_24750) | 65143..65724 | + | 582 | WP_058663077.1 | lipocalin family protein | - |
| PQQ12_RS24755 (PQQ12_24755) | 65670..66374 | - | 705 | WP_001067855.1 | IS6 family transposase IS26 | Transposase |
| PQQ12_RS24760 (PQQ12_24760) | 66527..67342 | + | 816 | WP_000018329.1 | Aminoglycoside 3'-phosphotransferase | ARG |
| PQQ12_RS24765 (PQQ12_24765) | 67532..68236 | - | 705 | WP_001067855.1 | IS6 family transposase IS26 | Transposase |
| PQQ12_RS24770 (PQQ12_24770) | 68301..69551 | - | 1251 | Protein_93 | transposase | - |
| PQQ12_RS24775 (PQQ12_24775) | 69626..70294 | - | 669 | WP_001300294.1 | putative signaling protein | VF |
| PQQ12_RS24780 (PQQ12_24780) | 70330..70566 | - | 237 | WP_000993386.1 | broad-spectrum mercury transporter MerE | - |
| PQQ12_RS24785 (PQQ12_24785) | 70563..70925 | - | 363 | WP_001277456.1 | mercury resistance co-regulator MerD | - |
| PQQ12_RS24790 (PQQ12_24790) | 70943..71440 | - | 498 | Protein_97 | mercuric reductase | - |
| PQQ12_RS24795 (PQQ12_24795) | 71601..72437 | - | 837 | WP_012728227.1 | Beta-lactamase TEM | ARG |
| PQQ12_RS24800 (PQQ12_24800) | 72477..73181 | - | 705 | WP_001067858.1 | IS6 family transposase IS15DI | Transposase |
| PQQ12_RS24805 (PQQ12_24805) | 73391..74380 | - | 990 | WP_001276635.1 | putative signaling protein | VF |
| PQQ12_RS24810 (PQQ12_24810) | 74377..74613 | - | 237 | WP_001087810.1 | broad-spectrum mercury transporter MerE | - |
| PQQ12_RS24815 (PQQ12_24815) | 74610..74975 | - | 366 | WP_000995361.1 | mercury resistance co-regulator MerD | - |
| PQQ12_RS24820 (PQQ12_24820) | 75087..75725 | - | 639 | WP_000761850.1 | organomercurial lyase MerB | - |
| PQQ12_RS24825 (PQQ12_24825) | 75740..77425 | - | 1686 | WP_000149288.1 | mercury(II) reductase | - |
| PQQ12_RS24830 (PQQ12_24830) | 77497..77772 | - | 276 | WP_000732290.1 | mercury resistance system periplasmic binding protein MerP | - |
| PQQ12_RS24835 (PQQ12_24835) | 77788..78138 | - | 351 | WP_001294666.1 | mercuric transport protein MerT | - |
| PQQ12_RS24840 (PQQ12_24840) | 78210..78644 | + | 435 | WP_000414383.1 | IS607 family transposase ISChh1 | Transposase |
| PQQ12_RS24845 (PQQ12_24845) | 78744..79748 | + | 1005 | WP_000427623.1 | IS110 family transposase IS4321R | Transposase |
| PQQ12_RS24850 (PQQ12_24850) | 80025..80144 | + | 120 | Protein_109 | permease | - |
| PQQ12_RS24855 (PQQ12_24855) | 80154..80270 | + | 117 | WP_000338626.1 | hypothetical protein | - |
| PQQ12_RS24860 (PQQ12_24860) | 80391..80765 | + | 375 | WP_000868820.1 | hypothetical protein | - |
| PQQ12_RS24865 (PQQ12_24865) | 80879..81604 | + | 726 | WP_000988731.1 | hypothetical protein | - |
| PQQ12_RS24870 (PQQ12_24870) | 81845..85990 | + | 4146 | WP_011872905.1 | RHS repeat-associated core domain-containing protein | - |
| PQQ12_RS24875 (PQQ12_24875) | 85980..86402 | + | 423 | WP_001165345.1 | hypothetical protein | - |
| PQQ12_RS24880 (PQQ12_24880) | 86573..87025 | + | 453 | Protein_115 | hypothetical protein | - |
| PQQ12_RS24885 (PQQ12_24885) | 87041..87643 | - | 603 | WP_000278322.1 | hypothetical protein | - |
| PQQ12_RS24890 (PQQ12_24890) | 87913..88194 | + | 282 | WP_000575657.1 | hypothetical protein | - |
| PQQ12_RS24895 (PQQ12_24895) | 88493..89029 | + | 537 | WP_000949433.1 | hypothetical protein | - |
| PQQ12_RS24900 (PQQ12_24900) | 89032..90042 | + | 1011 | WP_000543934.1 | IS91 family transposase ISWz1 | Transposase |
| PQQ12_RS24905 (PQQ12_24905) | 90047..90916 | + | 870 | WP_012728230.1 | 3'-5' exonuclease | - |
| PQQ12_RS24910 (PQQ12_24910) | 90913..91404 | + | 492 | WP_000139717.1 | hypothetical protein | - |
| PQQ12_RS24915 (PQQ12_24915) | 91731..92606 | + | 876 | WP_001097010.1 | DNA replication terminus site-binding protein | - |
| PQQ12_RS24920 (PQQ12_24920) | 92751..93791 | + | 1041 | WP_000101568.1 | DNA-binding protein | - |
| PQQ12_RS24925 (PQQ12_24925) | 94078..95589 | + | 1512 | WP_000811656.1 | UvrD-helicase domain-containing protein | - |
| PQQ12_RS24930 (PQQ12_24930) | 95700..96740 | + | 1041 | WP_001326396.1 | conjugal transfer protein TraF | - |
| PQQ12_RS24935 (PQQ12_24935) | 96742..98175 | + | 1434 | WP_000256129.1 | conjugal transfer protein TraH | - |
| PQQ12_RS24940 (PQQ12_24940) | 98188..101802 | + | 3615 | WP_000534551.1 | conjugal transfer protein TraG N-terminal domain-containing protein | - |
| PQQ12_RS24945 (PQQ12_24945) | 101840..102202 | - | 363 | WP_000683483.1 | hypothetical protein | - |
| PQQ12_RS24950 (PQQ12_24950) | 102918..103190 | + | 273 | WP_000356489.1 | helix-turn-helix domain-containing protein | - |
| PQQ12_RS24955 (PQQ12_24955) | 103190..103723 | + | 534 | WP_000790610.1 | transglycosylase SLT domain-containing protein | - |
| PQQ12_RS24960 (PQQ12_24960) | 103734..104342 | + | 609 | WP_000891157.1 | hypothetical protein | - |
| PQQ12_RS24965 (PQQ12_24965) | 104339..104890 | + | 552 | WP_001020646.1 | FlhC family transcriptional regulator | - |
| PQQ12_RS24970 (PQQ12_24970) | 104950..105369 | - | 420 | WP_000651490.1 | H-NS family nucleoid-associated regulatory protein | - |
| PQQ12_RS24975 (PQQ12_24975) | 105371..105664 | - | 294 | WP_000919078.1 | hypothetical protein | - |
| PQQ12_RS24980 (PQQ12_24980) | 105681..106664 | - | 984 | WP_000077458.1 | ParM/StbA family protein | - |
| PQQ12_RS24985 (PQQ12_24985) | 107163..107702 | + | 540 | WP_001447712.1 | conjugative transfer protein MobI(A/C) | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|