MGE detailed information
MGE type: Prophage MGE length: 72957 bp
Accession: NZ_CP117367 Location: 2713982..2786938 Organism: Salmonella enterica subsp. enterica serovar Dublin strain RM079 Replicon: chromosome
Accession: NZ_CP117367 Location: 2713982..2786938 Organism: Salmonella enterica subsp. enterica serovar Dublin strain RM079 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| PQQ12_RS13395 () | 2709020..2709178 | + | 159 | WP_000480735.1 | DUF5993 family protein | - |
| PQQ12_RS13400 () | 2709188..2709802 | + | 615 | WP_000848073.1 | disulfide bond formation protein B | - |
| PQQ12_RS13405 () | 2710129..2710296 | - | 168 | WP_001751917.1 | helix-turn-helix domain-containing protein | - |
| PQQ12_RS13410 () | 2710950..2711075 | - | 126 | WP_001574229.1 | hypothetical protein | - |
| PQQ12_RS13415 () | 2711075..2711254 | + | 180 | Protein_2625 | IS3 family transposase | - |
| PQQ12_RS13420 () | 2711643..2711843 | + | 201 | WP_001751604.1 | PagK family vesicle-borne virulence factor | - |
| PQQ12_RS13425 () | 2711940..2712415 | - | 476 | Protein_2627 | tail fiber assembly protein | - |
| PQQ12_RS13430 () | 2712432..2712767 | - | 336 | Protein_2628 | macro domain-containing protein | - |
| PQQ12_RS13435 () | 2712982..2713247 | - | 266 | Protein_2629 | DUF1441 family protein | - |
| PQQ12_RS13440 () | 2713302..2713493 | + | 192 | WP_001034751.1 | hypothetical protein | - |
| PQQ12_RS13445 () | 2713558..2713725 | + | 168 | WP_000789530.1 | lytic enzyme | - |
| PQQ12_RS13450 () | 2713982..2714515 | - | 534 | WP_000055326.1 | DUF2514 domain-containing protein | - |
| PQQ12_RS13455 () | 2714512..2714760 | - | 249 | Protein_2633 | glycoside hydrolase family 19 protein | - |
| PQQ12_RS13460 () | 2714908..2715903 | + | 996 | Protein_2634 | PD-(D/E)XK nuclease-like domain-containing protein | - |
| PQQ12_RS13465 () | 2715933..2717012 | + | 1080 | WP_000087644.1 | hypothetical protein ; Integrase | Integrase |
| PQQ12_RS13470 () | 2717966..2718766 | + | 801 | WP_001536069.1 | hypothetical protein | - |
| PQQ12_RS13475 () | 2718795..2719036 | - | 242 | Protein_2637 | recombinase family protein | - |
| PQQ12_RS13480 () | 2719246..2719968 | + | 723 | WP_000161701.1 | hypothetical protein | VF |
| PQQ12_RS13485 () | 2720170..2720739 | - | 570 | WP_000143180.1 | tail fiber assembly protein | - |
| PQQ12_RS13490 () | 2720739..2723156 | - | 2418 | WP_001574223.1 | prophage tail fiber N-terminal domain-containing protein | - |
| PQQ12_RS13495 () | 2723210..2723446 | - | 237 | WP_223229643.1 | hypothetical protein | - |
| PQQ12_RS13500 () | 2723491..2724354 | - | 864 | WP_072100756.1 | DUF1983 domain-containing protein | - |
| PQQ12_RS13505 () | 2724394..2726843 | - | 2450 | Protein_2643 | host specificity protein J | - |
| PQQ12_RS13510 () | 2726915..2727619 | - | 705 | WP_001576012.1 | tail assembly protein | - |
| PQQ12_RS13515 () | 2727523..2728254 | - | 732 | WP_000606352.1 | C40 family peptidase | - |
| PQQ12_RS13520 () | 2728264..2728959 | - | 696 | WP_001152416.1 | phage minor tail protein L | - |
| PQQ12_RS13525 () | 2729049..2729582 | + | 534 | WP_000877926.1 | hypothetical protein | VF |
| PQQ12_RS13530 () | 2729699..2730196 | - | 498 | WP_000725268.1 | Putative pre-16S rRNA nuclease | VF |
| PQQ12_RS13535 () | 2730295..2730627 | - | 333 | WP_000978295.1 | phage tail protein | - |
| PQQ12_RS13540 () | 2730624..2733611 | - | 2988 | WP_077906652.1 | phage tail tape measure protein | - |
| PQQ12_RS13545 () | 2733691..2734020 | - | 330 | WP_010989009.1 | phage tail assembly protein T | - |
| PQQ12_RS13550 () | 2734017..2734415 | - | 399 | WP_000478858.1 | phage minor tail protein G | - |
| PQQ12_RS13555 () | 2734461..2735210 | - | 750 | WP_000132757.1 | phage tail protein | - |
| PQQ12_RS13560 () | 2735222..2735623 | - | 402 | WP_000196703.1 | phage minor tail U family protein | - |
| PQQ12_RS13565 () | 2735620..2736186 | - | 567 | WP_000453192.1 | phage tail protein | - |
| PQQ12_RS13570 () | 2736167..2736466 | - | 300 | WP_000774239.1 | ATP-binding protein | - |
| PQQ12_RS13575 () | 2736459..2736782 | - | 324 | WP_001107908.1 | DUF2190 family protein | - |
| PQQ12_RS13580 () | 2736873..2738954 | - | 2082 | WP_010989008.1 | hypothetical protein | VF |
| PQQ12_RS13585 () | 2738878..2740425 | - | 1548 | WP_001009211.1 | phage portal protein | - |
| PQQ12_RS13590 () | 2740422..2740628 | - | 207 | WP_000196190.1 | hypothetical protein | - |
| PQQ12_RS13595 () | 2740625..2742763 | - | 2139 | WP_000989241.1 | phage terminase large subunit family protein | - |
| PQQ12_RS13600 () | 2742720..2743253 | - | 534 | WP_024139201.1 | DUF1441 family protein | - |
| PQQ12_RS13605 () | 2743461..2743940 | - | 480 | WP_001541990.1 | lysis protein | - |
| PQQ12_RS13610 () | 2743958..2744410 | - | 453 | WP_000984586.1 | glycoside hydrolase family protein | - |
| PQQ12_RS13615 () | 2744394..2744723 | - | 330 | WP_001574216.1 | phage holin, lambda family | - |
| PQQ12_RS13620 () | 2744999..2745685 | + | 687 | WP_001574215.1 | type III secretion system effector protease GtgA | - |
| PQQ12_RS13625 () | 2746046..2746495 | + | 450 | WP_000798708.1 | hypothetical protein | - |
| PQQ12_RS13630 () | 2746869..2747396 | - | 528 | WP_000971762.1 | hypothetical protein | - |
| PQQ12_RS13635 () | 2747490..2748179 | - | 690 | WP_001097218.1 | bacteriophage antitermination protein Q | - |
| PQQ12_RS13640 () | 2748176..2748312 | - | 137 | Protein_2670 | YlcG family protein | - |
| PQQ12_RS13645 () | 2748309..2748449 | - | 141 | Protein_2671 | recombination protein NinG | - |
| PQQ12_RS13650 () | 2748533..2749132 | - | 600 | WP_000940753.1 | DUF1367 family protein | - |
| PQQ12_RS13655 () | 2749196..2749414 | - | 219 | WP_001524708.1 | hypothetical protein | - |
| PQQ12_RS13660 () | 2749716..2749814 | - | 99 | WP_223151200.1 | hypothetical protein | - |
| PQQ12_RS13665 () | 2750133..2752112 | - | 1980 | WP_001237395.1 | alkyl sulfatase dimerization domain-containing protein | - |
| PQQ12_RS13670 () | 2752509..2753639 | + | 1131 | WP_000529512.1 | GGDEF domain-containing protein | - |
| PQQ12_RS13675 () | 2753926..2754321 | - | 396 | WP_000089417.1 | DUF977 family protein | - |
| PQQ12_RS13680 () | 2754334..2754876 | - | 543 | WP_158000546.1 | replication protein P | - |
| PQQ12_RS13685 () | 2754788..2755786 | - | 999 | WP_000729536.1 | DUF1376 domain-containing protein | - |
| PQQ12_RS13690 () | 2755833..2756327 | - | 495 | WP_001574210.1 | toxin YdaT family protein | - |
| PQQ12_RS13695 () | 2756314..2756568 | - | 255 | WP_001033912.1 | helix-turn-helix transcriptional regulator | - |
| PQQ12_RS13700 () | 2756667..2757065 | + | 399 | WP_001574209.1 | helix-turn-helix domain-containing protein | - |
| PQQ12_RS13705 () | 2757507..2757821 | - | 315 | WP_071591195.1 | hypothetical protein | - |
| PQQ12_RS13710 () | 2758083..2758358 | + | 276 | WP_000103933.1 | hypothetical protein | - |
| PQQ12_RS13715 () | 2758362..2758568 | + | 207 | WP_000682660.1 | cell division inhibitor protein | - |
| PQQ12_RS13720 () | 2758644..2758979 | + | 336 | WP_000799627.1 | hypothetical protein | - |
| PQQ12_RS13725 () | 2759120..2761810 | + | 2691 | WP_000023732.1 | exodeoxyribonuclease VIII | - |
| PQQ12_RS13730 () | 2761803..2762633 | + | 831 | WP_024139186.1 | recombination protein RecT | - |
| PQQ12_RS13735 () | 2762680..2762865 | + | 186 | WP_000280163.1 | DUF1187 family protein | - |
| PQQ12_RS13740 () | 2762964..2763392 | + | 429 | WP_000743301.1 | hypothetical protein | - |
| PQQ12_RS13745 () | 2763453..2763731 | + | 279 | WP_001675651.1 | excisionase | - |
| PQQ12_RS13750 () | 2763706..2764785 | + | 1080 | WP_000087638.1 | hypothetical protein ; Integrase | Integrase |
| - | 2764923..2765068 | + | 146 | - | - | Antitoxin Detail |
| - | 2764925..2765028 | - | 104 | - | - | Toxin Detail |
| PQQ12_RS13755 () | 2765168..2765521 | - | 354 | WP_000722368.1 | YebY family protein | - |
| PQQ12_RS13760 () | 2765538..2766413 | - | 876 | WP_000979703.1 | copper homeostasis membrane protein CopD | - |
| PQQ12_RS13765 () | 2766414..2766788 | - | 375 | WP_001751617.1 | CopC domain-containing protein YobA | - |
| PQQ12_RS13770 () | 2766926..2767156 | + | 231 | WP_000856224.1 | DNA polymerase III subunit theta | - |
| PQQ12_RS13775 () | 2767264..2767920 | + | 657 | WP_000100257.1 | carbon-nitrogen hydrolase family protein | - |
| PQQ12_RS13780 () | 2767944..2768642 | + | 699 | WP_000944287.1 | exodeoxyribonuclease X | - |
| PQQ12_RS13785 () | 2768679..2770730 | - | 2052 | WP_000936999.1 | oligopeptidase B | - |
| PQQ12_RS13790 () | 2770943..2771602 | - | 660 | WP_000024709.1 | tellurite resistance TerB family protein | - |
| PQQ12_RS13795 () | 2771696..2772049 | - | 354 | WP_001042123.1 | protein YebF | - |
| PQQ12_RS13800 () | 2772117..2772407 | - | 291 | WP_000257723.1 | DNA damage-inducible protein YebG | - |
| PQQ12_RS13805 () | 2772538..2773716 | + | 1179 | WP_000173430.1 | formate-dependent phosphoribosylglycinamide formyltransferase | - |
| PQQ12_RS13810 () | 2773816..2774457 | - | 642 | WP_000800494.1 | bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase | - |
| PQQ12_RS13815 () | 2774495..2776306 | - | 1812 | WP_001069124.1 | phosphogluconate dehydratase | - |
| PQQ12_RS13820 () | 2776541..2778016 | - | 1476 | WP_000301704.1 | glucose-6-phosphate dehydrogenase | - |
| PQQ12_RS13825 () | 2778358..2779227 | + | 870 | WP_001056720.1 | MurR/RpiR family transcriptional regulator | - |
| PQQ12_RS13830 () | 2779351..2780793 | + | 1443 | WP_000091156.1 | pyruvate kinase | - |
| PQQ12_RS13835 () | 2780866..2781837 | - | 972 | WP_000448401.1 | Putative fluoride ion transporter CrcB | VF |
| PQQ12_RS13840 () | 2781954..2783273 | - | 1320 | WP_001184028.1 | murein DD-endopeptidase MepM | - |
| PQQ12_RS13845 () | 2783289..2784233 | - | 945 | WP_000939597.1 | zinc ABC transporter substrate-binding protein ZnuA | - |
| PQQ12_RS13850 () | 2784312..2785067 | + | 756 | WP_000203013.1 | hypothetical protein | VF |
| PQQ12_RS13855 () | 2785064..2785849 | + | 786 | WP_000571508.1 | 3-octaprenyl-4-hydroxybenzoate carboxy-lyase | VF |
| PQQ12_RS13860 () | 2785928..2786938 | - | 1011 | WP_000568508.1 | Membrane-bound lytic murein transglycosylase C | VF |
| PQQ12_RS13865 () | 2786947..2787558 | - | 612 | WP_000580335.1 | Holliday junction branch migration protein RuvA | - |
| PQQ12_RS13870 () | 2787918..2788610 | - | 693 | WP_001675835.1 | hypothetical protein | - |
| PQQ12_RS13875 () | 2788819..2789415 | + | 597 | WP_000716751.1 | YebB family permuted papain-like enzyme | - |
| PQQ12_RS13880 () | 2789515..2791011 | - | 1497 | WP_000974701.1 | substrate-binding domain-containing protein | - |
| PQQ12_RS13885 () | 2791042..2791563 | - | 522 | WP_000022510.1 | crossover junction endodeoxyribonuclease RuvC | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|