MGE detailed information
MGE type: Non-Mobilizable plasmid MGE length: 75466 bp
Accession: NZ_CP117364 Location: 1..75466 Organism: Salmonella enterica subsp. enterica serovar Dublin strain RM092 Replicon: plasmid pRM092_2
Accession: NZ_CP117364 Location: 1..75466 Organism: Salmonella enterica subsp. enterica serovar Dublin strain RM092 Replicon: plasmid pRM092_2
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| PQQ00_RS24275 (PQQ00_24275) | 1..882 | + | 882 | WP_001675606.1 | incFII family plasmid replication initiator RepA | - |
| PQQ00_RS24280 (PQQ00_24280) | 1677..2071 | - | 395 | Protein_1 | IS66 family transposase zinc-finger binding domain-containing protein | - |
| PQQ00_RS24285 (PQQ00_24285) | 2140..2274 | - | 135 | Protein_2 | IS66 family transposase ISEc8 | Transposase |
| PQQ00_RS24290 (PQQ00_24290) | 2429..2626 | - | 198 | WP_001675602.1 | transposase | - |
| PQQ00_RS24295 (PQQ00_24295) | 2921..3523 | - | 603 | WP_223151229.1 | hypothetical protein | - |
| PQQ00_RS24300 (PQQ00_24300) | 3751..4410 | - | 660 | WP_001575507.1 | hypothetical protein | - |
| PQQ00_RS24305 (PQQ00_24305) | 5868..6140 | + | 273 | WP_001178538.1 | hypothetical protein | - |
| PQQ00_RS24310 (PQQ00_24310) | 6376..7173 | + | 798 | WP_000704721.1 | hypothetical protein | VF |
| PQQ00_RS24315 (PQQ00_24315) | 7201..7965 | + | 765 | WP_000827659.1 | hypothetical protein | VF |
| PQQ00_RS24320 (PQQ00_24320) | 7952..8227 | + | 276 | WP_001020576.1 | hypothetical protein | - |
| PQQ00_RS24325 (PQQ00_24325) | 8227..8940 | + | 714 | WP_000801115.1 | hypothetical protein | VF |
| PQQ00_RS24330 (PQQ00_24330) | 9065..9649 | + | 585 | WP_001575501.1 | hypothetical protein | - |
| PQQ00_RS24335 (PQQ00_24335) | 9722..9934 | + | 213 | WP_000063794.1 | P fimbrial regulatory protein KS71A | VF |
| PQQ00_RS24340 (PQQ00_24340) | 10195..10356 | + | 162 | WP_001816720.1 | hypothetical protein | - |
| PQQ00_RS24345 (PQQ00_24345) | 10382..11230 | + | 849 | WP_000175391.1 | SdiA-regulated domain-containing protein | - |
| PQQ00_RS24350 (PQQ00_24350) | 11800..12228 | - | 429 | WP_000812999.1 | type II toxin-antitoxin system VapC family toxin | Toxin Detail |
| PQQ00_RS24355 (PQQ00_24355) | 12225..12455 | - | 231 | WP_001261283.1 | type II toxin-antitoxin system VapB family antitoxin | Antitoxin Detail |
| PQQ00_RS24360 (PQQ00_24360) | 13200..13418 | + | 219 | WP_000813641.1 | type II toxin-antitoxin system antitoxin CcdA | Antitoxin Detail |
| PQQ00_RS24365 (PQQ00_24365) | 13420..13725 | + | 306 | WP_001159863.1 | type II toxin-antitoxin system toxin CcdB | Toxin Detail |
| PQQ00_RS24370 (PQQ00_24370) | 13727..14017 | + | 291 | WP_001266176.1 | hypothetical protein | - |
| PQQ00_RS24375 (PQQ00_24375) | 14014..14535 | + | 522 | WP_000198608.1 | hypothetical protein | - |
| PQQ00_RS24380 (PQQ00_24380) | 14570..15352 | + | 783 | WP_000082169.1 | site-specific integrase | - |
| PQQ00_RS24385 (PQQ00_24385) | 15361..16044 | + | 684 | WP_001751692.1 | Cyclic di-GMP phosphodiesterase PdeL | VF |
| PQQ00_RS24390 (PQQ00_24390) | 16098..16586 | + | 489 | WP_001075507.1 | CaiF/GrlA family transcriptional regulator | - |
| PQQ00_RS24395 (PQQ00_24395) | 16580..16916 | + | 337 | Protein_24 | hypothetical protein | - |
| PQQ00_RS24400 (PQQ00_24400) | 16907..17248 | + | 342 | Protein_25 | LysM peptidoglycan-binding domain-containing protein | - |
| PQQ00_RS24405 (PQQ00_24405) | 17143..17688 | + | 546 | WP_071591236.1 | inverse autotransporter beta domain-containing protein | - |
| PQQ00_RS24410 (PQQ00_24410) | 17755..18114 | - | 360 | WP_001675600.1 | IS200-IS605 family transposase ISEc46 | Transposase |
| PQQ00_RS24415 (PQQ00_24415) | 18171..18596 | + | 426 | WP_000064919.1 | IS200-IS605 family transposase ISEc46 | Transposase |
| PQQ00_RS24420 (PQQ00_24420) | 18723..19373 | - | 651 | WP_001575489.1 | SPI-2 type III secretion system effector cysteine hydrolase SpvD | - |
| PQQ00_RS24425 (PQQ00_24425) | 19634..20359 | - | 726 | WP_001122242.1 | MAPK phosphothreonine lyase | VF |
| PQQ00_RS24430 (PQQ00_24430) | 20640..22421 | - | 1782 | WP_001675599.1 | Mono(ADP-ribosyl)transferase SpvB | VF |
| PQQ00_RS24435 (PQQ00_24435) | 22473..22640 | - | 168 | WP_001526987.1 | hypothetical protein | - |
| PQQ00_RS24440 (PQQ00_24440) | 22603..23370 | - | 768 | WP_001575487.1 | virulence protein SpvA | - |
| PQQ00_RS24445 (PQQ00_24445) | 23544..23708 | - | 165 | WP_001576629.1 | glycoside hydrolase family protein | - |
| PQQ00_RS24450 (PQQ00_24450) | 23882..24775 | - | 894 | WP_000346692.1 | virulence genes transcriptional activator SpvR | - |
| PQQ00_RS24455 (PQQ00_24455) | 25382..26419 | + | 1038 | WP_001121398.1 | IS630 family transposase ISEc33 | Transposase |
| PQQ00_RS24460 (PQQ00_24460) | 26608..27633 | - | 1026 | WP_001576625.1 | ExeA family protein | - |
| PQQ00_RS24465 (PQQ00_24465) | 27566..29230 | - | 1665 | WP_000098783.1 | IS481 family transposase ISAzs36 | Transposase |
| PQQ00_RS24470 (PQQ00_24470) | 29214..29483 | - | 270 | Protein_39 | Tn3 family transposase TnpR_TnAs3 | Transposase |
| PQQ00_RS24475 (PQQ00_24475) | 29548..30252 | + | 705 | WP_001067855.1 | IS6 family transposase IS26 | Transposase |
| PQQ00_RS24480 (PQQ00_24480) | 30306..30602 | - | 297 | Protein_41 | Tn3 family transposase TnpR_ISPa38 | Transposase |
| PQQ00_RS24485 (PQQ00_24485) | 30809..31549 | - | 741 | WP_001541566.1 | carbonic anhydrase family protein | - |
| PQQ00_RS24490 (PQQ00_24490) | 32204..32692 | - | 489 | WP_001135407.1 | hypothetical protein | - |
| PQQ00_RS24495 (PQQ00_24495) | 32951..34066 | + | 1116 | WP_001247118.1 | DNA-binding protein | - |
| PQQ00_RS24500 (PQQ00_24500) | 34152..34568 | + | 417 | WP_001541564.1 | hypothetical protein | - |
| PQQ00_RS24505 (PQQ00_24505) | 34671..35087 | + | 417 | WP_000988946.1 | hypothetical protein | - |
| PQQ00_RS24510 (PQQ00_24510) | 35144..35745 | + | 602 | Protein_47 | DUF2913 family protein | - |
| PQQ00_RS24515 (PQQ00_24515) | 35742..36684 | - | 943 | Protein_48 | Recombination-promoting nuclease RpnA | VF |
| PQQ00_RS24520 (PQQ00_24520) | 37077..37697 | + | 621 | WP_000864788.1 | ParA family protein | - |
| PQQ00_RS24525 (PQQ00_24525) | 37749..37979 | + | 231 | WP_000051066.1 | plasmid partition protein ParG | - |
| PQQ00_RS24530 (PQQ00_24530) | 38618..38971 | - | 354 | WP_001675596.1 | DNA distortion polypeptide 3 | - |
| PQQ00_RS24535 (PQQ00_24535) | 39108..39554 | - | 447 | WP_001074381.1 | hypothetical protein | - |
| PQQ00_RS24540 (PQQ00_24540) | 39594..40430 | - | 837 | WP_001575533.1 | replication initiation protein | - |
| PQQ00_RS24545 (PQQ00_24545) | 41743..41994 | + | 252 | WP_000121743.1 | plasmid stabilization protein | Antitoxin Detail |
| PQQ00_RS24550 (PQQ00_24550) | 41984..42265 | + | 282 | WP_000220560.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin Detail |
| PQQ00_RS24555 (PQQ00_24555) | 42411..42734 | + | 324 | WP_001181909.1 | hypothetical protein | - |
| PQQ00_RS24560 (PQQ00_24560) | 42779..43024 | + | 246 | WP_000356542.1 | hypothetical protein | - |
| PQQ00_RS24565 (PQQ00_24565) | 43014..43229 | + | 216 | WP_001180117.1 | hypothetical protein | - |
| PQQ00_RS24570 (PQQ00_24570) | 43322..43651 | + | 330 | WP_000866650.1 | hypothetical protein | - |
| PQQ00_RS24575 (PQQ00_24575) | 43694..43873 | + | 180 | WP_001575529.1 | hypothetical protein | - |
| PQQ00_RS24580 (PQQ00_24580) | 43943..44092 | + | 150 | WP_000003880.1 | hypothetical protein | - |
| PQQ00_RS24585 (PQQ00_24585) | 44105..44377 | + | 273 | WP_000160399.1 | hypothetical protein | - |
| PQQ00_RS24590 (PQQ00_24590) | 44703..45248 | + | 546 | WP_000757691.1 | DNA distortion polypeptide 1 | - |
| PQQ00_RS24595 (PQQ00_24595) | 45251..46432 | + | 1182 | WP_000539536.1 | hypothetical protein | Relaxase |
| PQQ00_RS24600 (PQQ00_24600) | 46778..47296 | + | 519 | WP_001675951.1 | transcription termination/antitermination NusG family protein | - |
| PQQ00_RS24605 (PQQ00_24605) | 47226..47438 | + | 213 | WP_000125172.1 | hypothetical protein | - |
| PQQ00_RS24610 (PQQ00_24610) | 47471..48118 | + | 648 | WP_000953526.1 | Type IV secretion system protein virB1 | VF |
| PQQ00_RS24615 (PQQ00_24615) | 48096..48392 | + | 297 | WP_000916182.1 | TrbC/VirB2 family protein | - |
| PQQ00_RS24620 (PQQ00_24620) | 48411..51164 | + | 2754 | WP_001675613.1 | Type IV secretion system protein virB4 | VF |
| PQQ00_RS24625 (PQQ00_24625) | 51175..51933 | + | 759 | WP_000744198.1 | type IV secretion system protein | - |
| PQQ00_RS24630 (PQQ00_24630) | 51934..52161 | + | 228 | WP_000835348.1 | EexN family lipoprotein | - |
| PQQ00_RS24635 (PQQ00_24635) | 52171..53304 | + | 1134 | WP_000513456.1 | type IV secretion system protein | - |
| PQQ00_RS24640 (PQQ00_24640) | 53431..53559 | + | 129 | WP_001328099.1 | hypothetical protein | - |
| PQQ00_RS24645 (PQQ00_24645) | 53549..54262 | + | 714 | WP_000394613.1 | type IV secretion system protein | - |
| PQQ00_RS24650 (PQQ00_24650) | 54267..55196 | + | 930 | WP_000783377.1 | TrbG/VirB9 family P-type conjugative transfer protein | - |
| PQQ00_RS24655 (PQQ00_24655) | 55193..56398 | + | 1206 | WP_000139139.1 | Type IV secretion system protein virB10 | VF |
| PQQ00_RS24660 (PQQ00_24660) | 56400..57430 | + | 1031 | Protein_77 | Type IV secretion system protein VirB11 | VF |
| PQQ00_RS24665 (PQQ00_24665) | 57433..59268 | + | 1836 | WP_000053823.1 | type IV secretory system conjugative DNA transfer family protein | - |
| PQQ00_RS24670 (PQQ00_24670) | 59265..59678 | + | 414 | WP_001575522.1 | cag pathogenicity island Cag12 family protein | - |
| PQQ00_RS24675 (PQQ00_24675) | 59675..59977 | + | 303 | WP_015059377.1 | TrbM/KikA/MpfK family conjugal transfer protein | - |
| PQQ00_RS24680 (PQQ00_24680) | 60090..60284 | + | 195 | Protein_81 | ATP-binding protein | - |
| PQQ00_RS24685 (PQQ00_24685) | 60288..60863 | + | 576 | WP_001198970.1 | hypothetical protein | - |
| PQQ00_RS24690 (PQQ00_24690) | 60868..63021 | + | 2154 | WP_001235753.1 | type IA DNA topoisomerase | - |
| PQQ00_RS24695 (PQQ00_24695) | 63018..63224 | + | 207 | WP_000850859.1 | hemolysin expression modulator Hha | - |
| PQQ00_RS24700 (PQQ00_24700) | 63240..63674 | + | 435 | WP_001293135.1 | H-NS family nucleoid-associated regulatory protein | - |
| PQQ00_RS24705 (PQQ00_24705) | 64337..64822 | + | 486 | WP_001281416.1 | Abi family protein | - |
| PQQ00_RS24710 (PQQ00_24710) | 64981..66108 | - | 1128 | WP_000156234.1 | hypothetical protein | - |
| PQQ00_RS24715 (PQQ00_24715) | 66934..67029 | + | 96 | WP_000609147.1 | DinQ-like type I toxin DqlB | - |
| PQQ00_RS24720 (PQQ00_24720) | 67186..67830 | - | 645 | WP_000203397.1 | Tn3 family transposase TnpR_TnEc1 | Transposase |
| PQQ00_RS24725 (PQQ00_24725) | 67904..72160 | + | 4257 | Protein_90 | Multifunctional conjugation protein TraI | Relaxase |
| PQQ00_RS24730 (PQQ00_24730) | 72180..72920 | + | 741 | WP_000177628.1 | conjugal transfer pilus acetylase TraX | - |
| PQQ00_RS24735 (PQQ00_24735) | 72975..73538 | + | 564 | WP_000129019.1 | fertility inhibition protein FinO | - |
| PQQ00_RS24740 (PQQ00_24740) | 73655..73936 | + | 282 | Protein_93 | disulfide bond formation protein DsbA | - |
| PQQ00_RS24745 (PQQ00_24745) | 74217..74784 | + | 568 | Protein_94 | phospholipase D family protein | - |
| PQQ00_RS24750 (PQQ00_24750) | 74895..75161 | + | 267 | WP_001576653.1 | replication regulatory protein RepA | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|