MGE detailed information
MGE type: Non-Mobilizable plasmid MGE length: 74851 bp
Accession: NZ_CP117361 Location: 1..74851 Organism: Salmonella enterica subsp. enterica serovar Dublin strain RM094 Replicon: plasmid pRM094_2
Accession: NZ_CP117361 Location: 1..74851 Organism: Salmonella enterica subsp. enterica serovar Dublin strain RM094 Replicon: plasmid pRM094_2
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| PQP87_RS24385 (PQP87_24385) | 1..882 | + | 882 | WP_001675606.1 | incFII family plasmid replication initiator RepA | - |
| PQP87_RS24390 (PQP87_24390) | 1677..2071 | - | 395 | Protein_1 | IS66 family transposase zinc-finger binding domain-containing protein | - |
| PQP87_RS24395 (PQP87_24395) | 2140..2274 | - | 135 | Protein_2 | IS66 family transposase ISEc8 | Transposase |
| PQP87_RS24400 (PQP87_24400) | 2429..2626 | - | 198 | WP_001675602.1 | transposase | - |
| PQP87_RS24405 (PQP87_24405) | 2921..3523 | - | 603 | WP_223151229.1 | hypothetical protein | - |
| PQP87_RS24410 (PQP87_24410) | 3751..4410 | - | 660 | WP_001575507.1 | hypothetical protein | - |
| PQP87_RS24415 (PQP87_24415) | 5868..6140 | + | 273 | WP_001178538.1 | hypothetical protein | - |
| PQP87_RS24420 (PQP87_24420) | 6376..7173 | + | 798 | WP_000704721.1 | hypothetical protein | VF |
| PQP87_RS24425 (PQP87_24425) | 7201..7965 | + | 765 | WP_000827659.1 | hypothetical protein | VF |
| PQP87_RS24430 (PQP87_24430) | 7952..8227 | + | 276 | WP_001020576.1 | hypothetical protein | - |
| PQP87_RS24435 (PQP87_24435) | 8227..8940 | + | 714 | WP_000801115.1 | hypothetical protein | VF |
| PQP87_RS24440 (PQP87_24440) | 9065..9649 | + | 585 | WP_001575501.1 | hypothetical protein | - |
| PQP87_RS24445 (PQP87_24445) | 9722..9934 | + | 213 | WP_000063794.1 | hypothetical protein | VF |
| PQP87_RS24450 (PQP87_24450) | 10195..10356 | + | 162 | WP_001816720.1 | hypothetical protein | - |
| PQP87_RS24455 (PQP87_24455) | 10382..11230 | + | 849 | WP_000175391.1 | SdiA-regulated domain-containing protein | - |
| PQP87_RS24460 (PQP87_24460) | 11800..12228 | - | 429 | WP_000812999.1 | type II toxin-antitoxin system VapC family toxin | Toxin Detail |
| PQP87_RS24465 (PQP87_24465) | 12225..12455 | - | 231 | WP_001261283.1 | type II toxin-antitoxin system VapB family antitoxin | Antitoxin Detail |
| PQP87_RS24470 (PQP87_24470) | 13200..13418 | + | 219 | WP_000813641.1 | type II toxin-antitoxin system antitoxin CcdA | Antitoxin Detail |
| PQP87_RS24475 (PQP87_24475) | 13420..13725 | + | 306 | WP_001159863.1 | type II toxin-antitoxin system toxin CcdB | Toxin Detail |
| PQP87_RS24480 (PQP87_24480) | 13727..14017 | + | 291 | WP_001266176.1 | hypothetical protein | - |
| PQP87_RS24485 (PQP87_24485) | 14014..14535 | + | 522 | WP_000198608.1 | hypothetical protein | - |
| PQP87_RS24490 (PQP87_24490) | 14570..15352 | + | 783 | WP_000082169.1 | site-specific integrase | - |
| PQP87_RS24495 (PQP87_24495) | 15361..16044 | + | 684 | WP_001751692.1 | Cyclic di-GMP phosphodiesterase PdeL | VF |
| PQP87_RS24500 (PQP87_24500) | 16098..16586 | + | 489 | WP_001075507.1 | CaiF/GrlA family transcriptional regulator | - |
| PQP87_RS24505 (PQP87_24505) | 16580..16916 | + | 337 | Protein_24 | hypothetical protein | - |
| PQP87_RS24510 (PQP87_24510) | 16907..17248 | + | 342 | Protein_25 | LysM peptidoglycan-binding domain-containing protein | - |
| PQP87_RS24515 (PQP87_24515) | 17143..17688 | + | 546 | WP_071591236.1 | inverse autotransporter beta domain-containing protein | - |
| PQP87_RS24520 (PQP87_24520) | 17755..18114 | - | 360 | WP_001675600.1 | IS200-IS605 family transposase ISEc46 | Transposase |
| PQP87_RS24525 (PQP87_24525) | 18171..18596 | + | 426 | WP_000064919.1 | IS200-IS605 family transposase ISEc46 | Transposase |
| PQP87_RS24530 (PQP87_24530) | 18723..19373 | - | 651 | WP_001575489.1 | SPI-2 type III secretion system effector cysteine hydrolase SpvD | - |
| PQP87_RS24535 (PQP87_24535) | 19634..20359 | - | 726 | WP_001122242.1 | MAPK phosphothreonine lyase | VF |
| PQP87_RS24540 (PQP87_24540) | 20640..22421 | - | 1782 | WP_001675599.1 | Mono(ADP-ribosyl)transferase SpvB | VF |
| PQP87_RS24545 (PQP87_24545) | 22473..22640 | - | 168 | WP_001526987.1 | hypothetical protein | - |
| PQP87_RS24550 (PQP87_24550) | 22603..23370 | - | 768 | WP_001575487.1 | virulence protein SpvA | - |
| PQP87_RS24555 (PQP87_24555) | 23544..23708 | - | 165 | WP_001576629.1 | glycoside hydrolase family protein | - |
| PQP87_RS24560 (PQP87_24560) | 23882..24775 | - | 894 | WP_000346692.1 | virulence genes transcriptional activator SpvR | - |
| PQP87_RS24565 (PQP87_24565) | 25382..26419 | + | 1038 | WP_001121398.1 | IS630 family transposase ISEc33 | Transposase |
| PQP87_RS24570 (PQP87_24570) | 26608..27633 | - | 1026 | WP_001576625.1 | ExeA family protein | - |
| PQP87_RS24575 (PQP87_24575) | 27566..28951 | - | 1386 | Protein_38 | IS481 family transposase ISAzs36 | Transposase |
| PQP87_RS24580 (PQP87_24580) | 29003..29707 | - | 705 | WP_001067855.1 | IS6 family transposase IS26 | Transposase |
| PQP87_RS24585 (PQP87_24585) | 29771..30064 | - | 294 | Protein_40 | Tn3 family transposase TnpR_ISPa38 | Transposase |
| PQP87_RS24590 (PQP87_24590) | 30271..31011 | - | 741 | WP_001541566.1 | carbonic anhydrase family protein | - |
| PQP87_RS24595 (PQP87_24595) | 31666..32154 | - | 489 | WP_001135407.1 | hypothetical protein | - |
| PQP87_RS24600 (PQP87_24600) | 32413..33528 | + | 1116 | WP_001247118.1 | DNA-binding protein | - |
| PQP87_RS24605 (PQP87_24605) | 33614..34030 | + | 417 | WP_001541564.1 | hypothetical protein | - |
| PQP87_RS24610 (PQP87_24610) | 34133..34549 | + | 417 | WP_000988946.1 | hypothetical protein | - |
| PQP87_RS24615 (PQP87_24615) | 34606..35207 | + | 602 | Protein_46 | DUF2913 family protein | - |
| PQP87_RS24620 (PQP87_24620) | 35204..36146 | - | 943 | Protein_47 | ISNCY family transposase ISSen7 | VF |
| PQP87_RS24625 (PQP87_24625) | 36539..37159 | + | 621 | WP_000864788.1 | ParA family protein | - |
| PQP87_RS24630 (PQP87_24630) | 37211..37441 | + | 231 | WP_000051066.1 | plasmid partition protein ParG | - |
| PQP87_RS24635 (PQP87_24635) | 38080..38433 | - | 354 | WP_001675596.1 | DNA distortion polypeptide 3 | - |
| PQP87_RS24640 (PQP87_24640) | 38570..39016 | - | 447 | WP_001074381.1 | hypothetical protein | - |
| PQP87_RS24645 (PQP87_24645) | 39056..39892 | - | 837 | WP_001575533.1 | replication initiation protein | - |
| PQP87_RS24650 (PQP87_24650) | 41128..41379 | + | 252 | WP_000121743.1 | plasmid stabilization protein | Antitoxin Detail |
| PQP87_RS24655 (PQP87_24655) | 41369..41650 | + | 282 | WP_000220560.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin Detail |
| PQP87_RS24660 (PQP87_24660) | 41796..42119 | + | 324 | WP_001181909.1 | hypothetical protein | - |
| PQP87_RS24665 (PQP87_24665) | 42164..42409 | + | 246 | WP_000356542.1 | hypothetical protein | - |
| PQP87_RS24670 (PQP87_24670) | 42399..42614 | + | 216 | WP_001180117.1 | hypothetical protein | - |
| PQP87_RS24675 (PQP87_24675) | 42707..43036 | + | 330 | WP_000866650.1 | hypothetical protein | - |
| PQP87_RS24680 (PQP87_24680) | 43079..43258 | + | 180 | WP_001575529.1 | hypothetical protein | - |
| PQP87_RS24685 (PQP87_24685) | 43280..43477 | + | 198 | WP_001675595.1 | hypothetical protein | - |
| PQP87_RS24690 (PQP87_24690) | 43490..43762 | + | 273 | WP_000160399.1 | hypothetical protein | - |
| PQP87_RS24695 (PQP87_24695) | 44088..44633 | + | 546 | WP_000757691.1 | DNA distortion polypeptide 1 | - |
| PQP87_RS24700 (PQP87_24700) | 44636..45817 | + | 1182 | WP_000539536.1 | hypothetical protein | Relaxase |
| PQP87_RS24705 (PQP87_24705) | 46163..46681 | + | 519 | WP_001675951.1 | transcription termination/antitermination NusG family protein | - |
| PQP87_RS24710 (PQP87_24710) | 46611..46823 | + | 213 | WP_000125172.1 | hypothetical protein | - |
| PQP87_RS24715 (PQP87_24715) | 46856..47503 | + | 648 | WP_000953526.1 | hypothetical protein | VF |
| PQP87_RS24720 (PQP87_24720) | 47481..47777 | + | 297 | WP_000916182.1 | TrbC/VirB2 family protein | - |
| PQP87_RS24725 (PQP87_24725) | 47796..50549 | + | 2754 | WP_001675613.1 | Type IV secretion system protein virB4 | VF |
| PQP87_RS24730 (PQP87_24730) | 50560..51318 | + | 759 | WP_000744198.1 | type IV secretion system protein | - |
| PQP87_RS24735 (PQP87_24735) | 51319..51546 | + | 228 | WP_000835348.1 | EexN family lipoprotein | - |
| PQP87_RS24740 (PQP87_24740) | 51556..52689 | + | 1134 | WP_000513456.1 | type IV secretion system protein | - |
| PQP87_RS24745 (PQP87_24745) | 52816..52944 | + | 129 | WP_001328099.1 | hypothetical protein | - |
| PQP87_RS24750 (PQP87_24750) | 52934..53647 | + | 714 | WP_000394613.1 | type IV secretion system protein | - |
| PQP87_RS24755 (PQP87_24755) | 53652..54581 | + | 930 | WP_000783377.1 | TrbG/VirB9 family P-type conjugative transfer protein | - |
| PQP87_RS24760 (PQP87_24760) | 54578..55783 | + | 1206 | WP_000139139.1 | hypothetical protein | VF |
| PQP87_RS24765 (PQP87_24765) | 55785..56815 | + | 1031 | Protein_76 | Type IV secretion system protein VirB11 | VF |
| PQP87_RS24770 (PQP87_24770) | 56818..58653 | + | 1836 | WP_000053823.1 | type IV secretory system conjugative DNA transfer family protein | - |
| PQP87_RS24775 (PQP87_24775) | 58650..59063 | + | 414 | WP_001575522.1 | cag pathogenicity island Cag12 family protein | - |
| PQP87_RS24780 (PQP87_24780) | 59060..59362 | + | 303 | WP_015059377.1 | TrbM/KikA/MpfK family conjugal transfer protein | - |
| PQP87_RS24785 (PQP87_24785) | 59475..59669 | + | 195 | Protein_80 | ATP-binding protein | - |
| PQP87_RS24790 (PQP87_24790) | 59673..60248 | + | 576 | WP_001198970.1 | hypothetical protein | - |
| PQP87_RS24795 (PQP87_24795) | 60253..62406 | + | 2154 | WP_001235753.1 | type IA DNA topoisomerase | - |
| PQP87_RS24800 (PQP87_24800) | 62403..62609 | + | 207 | WP_000850859.1 | hemolysin expression modulator Hha | - |
| PQP87_RS24805 (PQP87_24805) | 62625..63059 | + | 435 | WP_001293135.1 | H-NS family nucleoid-associated regulatory protein | - |
| PQP87_RS24810 (PQP87_24810) | 63722..64207 | + | 486 | WP_001281416.1 | Abi family protein | - |
| PQP87_RS24815 (PQP87_24815) | 64366..65493 | - | 1128 | WP_000156234.1 | hypothetical protein | - |
| PQP87_RS24820 (PQP87_24820) | 66319..66414 | + | 96 | WP_000609147.1 | DinQ-like type I toxin DqlB | - |
| PQP87_RS24825 (PQP87_24825) | 66571..67215 | - | 645 | WP_000203397.1 | Tn3 family transposase TnpR_TnEc1 | Transposase |
| PQP87_RS24830 (PQP87_24830) | 67289..71545 | + | 4257 | Protein_89 | Multifunctional conjugation protein TraI | Relaxase |
| PQP87_RS24835 (PQP87_24835) | 71565..72305 | + | 741 | WP_000177628.1 | conjugal transfer pilus acetylase TraX | - |
| PQP87_RS24840 (PQP87_24840) | 72360..72923 | + | 564 | WP_000129019.1 | fertility inhibition protein FinO | - |
| PQP87_RS24845 (PQP87_24845) | 73040..73321 | + | 282 | Protein_92 | disulfide bond formation protein DsbA | - |
| PQP87_RS24850 (PQP87_24850) | 73602..74169 | + | 568 | Protein_93 | phospholipase D family protein | - |
| PQP87_RS24855 (PQP87_24855) | 74280..74546 | + | 267 | WP_001576653.1 | replication regulatory protein RepA | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|