MGE detailed information
MGE type: Prophage MGE length: 89976 bp
Accession: NZ_CP117354 Location: 2657368..2747343 Organism: Salmonella enterica subsp. enterica serovar Dublin strain RM099 Replicon: chromosome
Accession: NZ_CP117354 Location: 2657368..2747343 Organism: Salmonella enterica subsp. enterica serovar Dublin strain RM099 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| PQP84_RS13070 () | 2652881..2653378 | - | 498 | WP_001518229.1 | GAF domain-containing protein | - |
| PQP84_RS13075 () | 2653507..2654790 | + | 1284 | WP_001207294.1 | membrane integrity lipid transport subunit YebS | - |
| PQP84_RS13080 () | 2654759..2657392 | + | 2634 | WP_001752430.1 | PqiB family protein | - |
| PQP84_RS13085 () | 2657470..2658909 | + | 1440 | WP_001531515.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| PQP84_RS13090 () | 2659027..2659263 | + | 237 | WP_024131108.1 | YebV family protein | - |
| PQP84_RS13095 () | 2659374..2659565 | + | 192 | WP_000457838.1 | DUF1482 family protein | - |
| PQP84_RS13100 () | 2659584..2660234 | - | 651 | WP_000986173.1 | protein-serine/threonine phosphatase | - |
| PQP84_RS13105 () | 2660458..2660622 | - | 165 | WP_001134856.1 | membrane protein | - |
| PQP84_RS13110 () | 2660907..2661629 | - | 723 | WP_000182072.1 | Guanine nucleotide exchange factor sopE2 | VF |
| PQP84_RS13115 () | 2662313..2662654 | + | 342 | WP_001752424.1 | DUF1398 family protein | - |
| PQP84_RS13120 () | 2663036..2663512 | + | 477 | WP_000030946.1 | hypothetical protein | - |
| PQP84_RS13125 () | 2663885..2664304 | - | 420 | WP_000354407.1 | GNAT family N-acetyltransferase | - |
| PQP84_RS13130 () | 2664674..2664943 | + | 270 | WP_001752421.1 | hypothetical protein | - |
| PQP84_RS13135 () | 2665109..2665249 | + | 141 | WP_001617922.1 | hypothetical protein | - |
| PQP84_RS13140 () | 2665395..2666589 | - | 1195 | Protein_2570 | IS256 family transposase IS285 | Transposase |
| PQP84_RS24745 () | 2666965..2667081 | + | 117 | WP_231919481.1 | integrase | - |
| PQP84_RS13150 () | 2668377..2669292 | + | 916 | Protein_2572 | DMT family transporter | - |
| PQP84_RS13155 () | 2669425..2669583 | + | 159 | WP_000480735.1 | DUF5993 family protein | - |
| PQP84_RS13160 () | 2669593..2670207 | + | 615 | WP_000848073.1 | disulfide bond formation protein B | - |
| PQP84_RS13165 () | 2670534..2670701 | - | 168 | WP_001751917.1 | helix-turn-helix domain-containing protein | - |
| PQP84_RS13170 () | 2671355..2671480 | - | 126 | WP_001574229.1 | hypothetical protein | - |
| PQP84_RS13175 () | 2671480..2671659 | + | 180 | Protein_2577 | IS3 family transposase | - |
| PQP84_RS13180 () | 2672048..2672248 | + | 201 | WP_001751604.1 | PagK family vesicle-borne virulence factor | - |
| PQP84_RS13185 () | 2672345..2672820 | - | 476 | Protein_2579 | tail fiber assembly protein | - |
| PQP84_RS13190 () | 2672837..2673172 | - | 336 | Protein_2580 | macro domain-containing protein | - |
| PQP84_RS13195 () | 2673387..2673652 | - | 266 | Protein_2581 | DUF1441 family protein | - |
| PQP84_RS13200 () | 2673707..2673898 | + | 192 | WP_001034751.1 | hypothetical protein | - |
| PQP84_RS13205 () | 2673963..2674130 | + | 168 | WP_000789530.1 | lytic enzyme | - |
| PQP84_RS13210 () | 2674387..2674920 | - | 534 | WP_000055326.1 | DUF2514 domain-containing protein | - |
| PQP84_RS13215 () | 2674917..2675165 | - | 249 | Protein_2585 | glycoside hydrolase family 19 protein | - |
| PQP84_RS13220 () | 2675313..2676308 | + | 996 | Protein_2586 | PD-(D/E)XK nuclease-like domain-containing protein | - |
| PQP84_RS13225 () | 2676338..2677417 | + | 1080 | WP_000087644.1 | hypothetical protein ; Integrase | Integrase |
| PQP84_RS13230 () | 2678371..2679171 | + | 801 | WP_001536069.1 | hypothetical protein | - |
| PQP84_RS13235 () | 2679200..2679441 | - | 242 | Protein_2589 | recombinase family protein | - |
| PQP84_RS13240 () | 2679651..2680373 | + | 723 | WP_000161701.1 | Guanine nucleotide exchange factor SopE | VF |
| PQP84_RS13245 () | 2680575..2681144 | - | 570 | WP_000143180.1 | tail fiber assembly protein | - |
| PQP84_RS13250 () | 2681144..2683561 | - | 2418 | WP_001574223.1 | prophage tail fiber N-terminal domain-containing protein | - |
| PQP84_RS13255 () | 2683615..2683857 | - | 243 | WP_000178848.1 | hypothetical protein | - |
| PQP84_RS13260 () | 2683896..2684759 | - | 864 | WP_072100756.1 | DUF1983 domain-containing protein | - |
| PQP84_RS13265 () | 2684799..2687248 | - | 2450 | Protein_2595 | host specificity protein J | - |
| PQP84_RS13270 () | 2687320..2688024 | - | 705 | WP_001576012.1 | tail assembly protein | - |
| PQP84_RS13275 () | 2687928..2688659 | - | 732 | WP_000606352.1 | C40 family peptidase | - |
| PQP84_RS13280 () | 2688669..2689364 | - | 696 | WP_001152416.1 | phage minor tail protein L | - |
| PQP84_RS13285 () | 2689454..2689987 | + | 534 | WP_000877926.1 | Superoxide dismutase [Cu-Zn] 1 | VF |
| PQP84_RS13290 () | 2690104..2690601 | - | 498 | WP_000725268.1 | Attachment invasion locus protein | VF |
| PQP84_RS13295 () | 2690700..2691032 | - | 333 | WP_000978295.1 | phage tail protein | - |
| PQP84_RS13300 () | 2691029..2694016 | - | 2988 | WP_077906652.1 | phage tail tape measure protein | - |
| PQP84_RS13305 () | 2694096..2694425 | - | 330 | WP_010989009.1 | phage tail assembly protein T | - |
| PQP84_RS13310 () | 2694422..2694820 | - | 399 | WP_000478858.1 | phage minor tail protein G | - |
| PQP84_RS13315 () | 2694866..2695615 | - | 750 | WP_000132757.1 | phage tail protein | - |
| PQP84_RS13320 () | 2695627..2696028 | - | 402 | WP_000196703.1 | phage minor tail U family protein | - |
| PQP84_RS13325 () | 2696025..2696591 | - | 567 | WP_000453192.1 | phage tail protein | - |
| PQP84_RS13330 () | 2696572..2696871 | - | 300 | WP_000774239.1 | ATP-binding protein | - |
| PQP84_RS13335 () | 2696864..2697187 | - | 324 | WP_001107908.1 | DUF2190 family protein | - |
| PQP84_RS13340 () | 2697278..2699359 | - | 2082 | WP_010989008.1 | ATP-dependent Clp protease proteolytic subunit | VF |
| PQP84_RS13345 () | 2699283..2700830 | - | 1548 | WP_001009211.1 | phage portal protein | - |
| PQP84_RS13350 () | 2700827..2701033 | - | 207 | WP_000196190.1 | hypothetical protein | - |
| PQP84_RS13355 () | 2701030..2703168 | - | 2139 | WP_000989241.1 | phage terminase large subunit family protein | - |
| PQP84_RS13360 () | 2703125..2703658 | - | 534 | WP_024139201.1 | DUF1441 family protein | - |
| PQP84_RS13365 () | 2703866..2704345 | - | 480 | WP_001541990.1 | lysis protein | - |
| PQP84_RS13370 () | 2704363..2704815 | - | 453 | WP_000984586.1 | glycoside hydrolase family protein | - |
| PQP84_RS13375 () | 2704799..2705128 | - | 330 | WP_001574216.1 | phage holin, lambda family | - |
| PQP84_RS13380 () | 2705404..2706090 | + | 687 | WP_001574215.1 | type III secretion system effector protease GtgA | - |
| PQP84_RS13385 () | 2706451..2706900 | + | 450 | WP_000798708.1 | hypothetical protein | - |
| PQP84_RS13390 () | 2707274..2707801 | - | 528 | WP_000971762.1 | hypothetical protein | - |
| PQP84_RS13395 () | 2707895..2708584 | - | 690 | WP_001097218.1 | bacteriophage antitermination protein Q | - |
| PQP84_RS13400 () | 2708581..2708717 | - | 137 | Protein_2622 | YlcG family protein | - |
| PQP84_RS13405 () | 2708714..2708854 | - | 141 | Protein_2623 | recombination protein NinG | - |
| PQP84_RS13410 () | 2708938..2709537 | - | 600 | WP_000940753.1 | DUF1367 family protein | - |
| PQP84_RS13415 () | 2709601..2709819 | - | 219 | WP_001524708.1 | hypothetical protein | - |
| PQP84_RS13420 () | 2710121..2710219 | - | 99 | WP_223151200.1 | hypothetical protein | - |
| PQP84_RS13425 () | 2710538..2712517 | - | 1980 | WP_001237395.1 | alkyl sulfatase dimerization domain-containing protein | - |
| PQP84_RS13430 () | 2712914..2714044 | + | 1131 | WP_000529512.1 | GGDEF domain-containing protein | - |
| PQP84_RS13435 () | 2714331..2714726 | - | 396 | WP_000089417.1 | DUF977 family protein | - |
| PQP84_RS13440 () | 2714739..2715281 | - | 543 | WP_158000546.1 | replication protein P | - |
| PQP84_RS13445 () | 2715193..2716191 | - | 999 | WP_000729536.1 | DUF1376 domain-containing protein | - |
| PQP84_RS13450 () | 2716238..2716732 | - | 495 | WP_001574210.1 | toxin YdaT family protein | - |
| PQP84_RS13455 () | 2716719..2716973 | - | 255 | WP_001033912.1 | helix-turn-helix transcriptional regulator | - |
| PQP84_RS13460 () | 2717072..2717470 | + | 399 | WP_001574209.1 | helix-turn-helix domain-containing protein | - |
| PQP84_RS13465 () | 2717912..2718226 | - | 315 | WP_071591195.1 | hypothetical protein | - |
| PQP84_RS13470 () | 2718488..2718763 | + | 276 | WP_000103933.1 | hypothetical protein | - |
| PQP84_RS13475 () | 2718767..2718973 | + | 207 | WP_000682660.1 | cell division inhibitor protein | - |
| PQP84_RS13480 () | 2719049..2719384 | + | 336 | WP_000799627.1 | hypothetical protein | - |
| PQP84_RS13485 () | 2719525..2722215 | + | 2691 | WP_000023732.1 | exodeoxyribonuclease VIII | - |
| PQP84_RS13490 () | 2722208..2723038 | + | 831 | WP_024139186.1 | recombination protein RecT | - |
| PQP84_RS13495 () | 2723085..2723270 | + | 186 | WP_000280163.1 | DUF1187 family protein | - |
| PQP84_RS13500 () | 2723369..2723797 | + | 429 | WP_000743301.1 | hypothetical protein | - |
| PQP84_RS13505 () | 2723858..2724136 | + | 279 | WP_001675651.1 | excisionase | - |
| PQP84_RS13510 () | 2724111..2725190 | + | 1080 | WP_000087638.1 | hypothetical protein ; Integrase | Integrase |
| - | 2725328..2725473 | + | 146 | - | - | Antitoxin Detail |
| - | 2725330..2725433 | - | 104 | - | - | Toxin Detail |
| PQP84_RS13515 () | 2725573..2725926 | - | 354 | WP_000722368.1 | YebY family protein | - |
| PQP84_RS13520 () | 2725943..2726818 | - | 876 | WP_000979703.1 | copper homeostasis membrane protein CopD | - |
| PQP84_RS13525 () | 2726819..2727193 | - | 375 | WP_001751617.1 | CopC domain-containing protein YobA | - |
| PQP84_RS13530 () | 2727331..2727561 | + | 231 | WP_000856224.1 | DNA polymerase III subunit theta | - |
| PQP84_RS13535 () | 2727669..2728325 | + | 657 | WP_274891657.1 | carbon-nitrogen hydrolase family protein | - |
| PQP84_RS13540 () | 2728349..2729047 | + | 699 | WP_000944287.1 | exodeoxyribonuclease X | - |
| PQP84_RS13545 () | 2729084..2731135 | - | 2052 | WP_000936999.1 | oligopeptidase B | - |
| PQP84_RS13550 () | 2731348..2732007 | - | 660 | WP_000024709.1 | tellurite resistance TerB family protein | - |
| PQP84_RS13555 () | 2732101..2732454 | - | 354 | WP_001042123.1 | protein YebF | - |
| PQP84_RS13560 () | 2732522..2732812 | - | 291 | WP_000257723.1 | DNA damage-inducible protein YebG | - |
| PQP84_RS13565 () | 2732943..2734121 | + | 1179 | WP_000173430.1 | formate-dependent phosphoribosylglycinamide formyltransferase | - |
| PQP84_RS13570 () | 2734221..2734862 | - | 642 | WP_000800494.1 | bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase | - |
| PQP84_RS13575 () | 2734900..2736711 | - | 1812 | WP_001069124.1 | phosphogluconate dehydratase | - |
| PQP84_RS13580 () | 2736946..2738421 | - | 1476 | WP_000301704.1 | glucose-6-phosphate dehydrogenase | - |
| PQP84_RS13585 () | 2738763..2739632 | + | 870 | WP_001056720.1 | MurR/RpiR family transcriptional regulator | - |
| PQP84_RS13590 () | 2739756..2741198 | + | 1443 | WP_000091156.1 | pyruvate kinase | - |
| PQP84_RS13595 () | 2741271..2742242 | - | 972 | WP_000448401.1 | Lipid A biosynthesis myristoyltransferase | VF |
| PQP84_RS13600 () | 2742359..2743678 | - | 1320 | WP_001184028.1 | murein DD-endopeptidase MepM | - |
| PQP84_RS13605 () | 2743694..2744638 | - | 945 | WP_000939597.1 | zinc ABC transporter substrate-binding protein ZnuA | - |
| PQP84_RS13610 () | 2744717..2745472 | + | 756 | WP_000203013.1 | Zinc import ATP-binding protein ZnuC | VF |
| PQP84_RS13615 () | 2745469..2746254 | + | 786 | WP_000571508.1 | High-affinity zinc uptake system membrane protein ZnuB | VF |
| PQP84_RS13620 () | 2746333..2747343 | - | 1011 | WP_000568508.1 | Holliday junction ATP-dependent DNA helicase RuvB | VF |
| PQP84_RS13625 () | 2747352..2747963 | - | 612 | WP_000580335.1 | Holliday junction branch migration protein RuvA | - |
| PQP84_RS13630 () | 2748323..2749015 | - | 693 | WP_001675835.1 | hypothetical protein | - |
| PQP84_RS13635 () | 2749224..2749820 | + | 597 | WP_000716751.1 | YebB family permuted papain-like enzyme | - |
| PQP84_RS13640 () | 2749920..2751416 | - | 1497 | WP_000974701.1 | substrate-binding domain-containing protein | - |
| PQP84_RS13645 () | 2751447..2751968 | - | 522 | WP_000022510.1 | crossover junction endodeoxyribonuclease RuvC | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|