MGE detailed information
MGE type: Genomic_island MGE length: 56869 bp
Accession: NZ_CP117235 Location: 3986686..4043554 Organism: Escherichia coli strain ATCC 25922 Replicon: chromosome
Accession: NZ_CP117235 Location: 3986686..4043554 Organism: Escherichia coli strain ATCC 25922 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| PQQ28_RS19625 (3982446) | 3982446..3983477 | - | 1032 | WP_000416159.1 | LacI family DNA-binding transcriptional regulator | - |
| PQQ28_RS19630 (3983748) | 3983748..3984191 | + | 444 | WP_000916811.1 | PTS sugar transporter subunit IIA | - |
| PQQ28_RS19635 (3984207) | 3984207..3984494 | + | 288 | WP_000705927.1 | PTS sugar transporter subunit IIB | - |
| PQQ28_RS19640 (3984507) | 3984507..3985763 | + | 1257 | WP_000345349.1 | PTS ascorbate transporter subunit IIC | - |
| PQQ28_RS19645 (3986010) | 3986010..3986264 | - | 255 | WP_001327567.1 | transposase | - |
| PQQ28_RS19650 (3986686) | 3986686..3987699 | - | 1014 | WP_000107474.1 | aldose 1-epimerase family protein | - |
| PQQ28_RS19655 (3987711) | 3987711..3989027 | - | 1317 | WP_000998353.1 | L-fucose:H+ symporter permease | - |
| PQQ28_RS19660 (3989055) | 3989055..3989975 | - | 921 | WP_000350265.1 | ribokinase | - |
| PQQ28_RS19665 (3990281) | 3990281..3991063 | + | 783 | WP_001305338.1 | DeoR family transcriptional regulator | - |
| PQQ28_RS19670 (3991065) | 3991065..3991291 | - | 227 | Protein_3784 | acetolactate synthase small subunit | - |
| PQQ28_RS19675 (3992602) | 3992602..3993060 | + | 459 | WP_001529506.1 | hypothetical protein | - |
| PQQ28_RS19680 (3993496) | 3993496..3993831 | + | 336 | WP_223931571.1 | CPBP family intramembrane metalloprotease | - |
| PQQ28_RS19685 (3994151) | 3994151..3995116 | - | 966 | WP_001305344.1 | hypothetical protein | - |
| PQQ28_RS19690 (3995224) | 3995224..3997458 | - | 2235 | WP_001032962.1 | exopolygalacturonate lyase | - |
| PQQ28_RS19695 (3997460) | 3997460..3998974 | - | 1515 | WP_000134160.1 | MFS transporter | - |
| PQQ28_RS19700 (3999340) | 3999340..3999663 | - | 324 | WP_000497518.1 | cupin domain-containing protein | - |
| PQQ28_RS19705 (3999718) | 3999718..4000518 | - | 801 | WP_000345753.1 | hypothetical protein | VF |
| PQQ28_RS19710 (4000548) | 4000548..4001720 | - | 1173 | WP_001051732.1 | oligogalacturonate lyase family protein | - |
| PQQ28_RS19715 (4001962) | 4001962..4002600 | + | 639 | WP_000684812.1 | RpiB/LacA/LacB family sugar-phosphate isomerase | - |
| PQQ28_RS19720 (4002838) | 4002838..4003035 | - | 198 | WP_001305346.1 | AlpA family transcriptional regulator | - |
| PQQ28_RS19725 (4003103) | 4003103..4003373 | - | 271 | Protein_3795 | hypothetical protein | - |
| PQQ28_RS19730 (4003423) | 4003423..4003989 | - | 567 | WP_000287897.1 | inovirus-type Gp2 protein | - |
| PQQ28_RS19735 (4004461) | 4004461..4004886 | - | 426 | WP_001013326.1 | putative zinc ribbon protein | - |
| PQQ28_RS19740 (4004883) | 4004883..4005266 | - | 384 | WP_000270955.1 | putative zinc ribbon protein | - |
| PQQ28_RS19745 (4005638) | 4005638..4006237 | - | 600 | WP_000860849.1 | inovirus-type Gp2 protein | - |
| PQQ28_RS19750 (4006469) | 4006469..4006618 | - | 150 | WP_072146520.1 | Hha/YmoA family nucleoid-associated regulatory protein | - |
| PQQ28_RS19755 (4007684) | 4007684..4008475 | + | 792 | WP_001367564.1 | hypothetical protein | - |
| PQQ28_RS19760 (4008859) | 4008859..4009065 | + | 207 | WP_001305352.1 | AlpA family transcriptional regulator | - |
| PQQ28_RS19765 (4009153) | 4009153..4009761 | + | 609 | WP_000782654.1 | hypothetical protein | - |
| PQQ28_RS19770 (4010224) | 4010224..4010376 | + | 153 | Protein_3804 | ATP-binding protein | - |
| PQQ28_RS19775 (4011555) | 4011555..4011769 | + | 215 | Protein_3805 | hypothetical protein | - |
| PQQ28_RS19780 (4012294) | 4012294..4012551 | - | 258 | WP_001163787.1 | hypothetical protein | - |
| PQQ28_RS19785 (4012605) | 4012605..4013372 | - | 768 | WP_000016205.1 | hypothetical protein | VF |
| PQQ28_RS19790 (4013369) | 4013369..4014427 | - | 1059 | WP_000217077.1 | hypothetical protein | VF |
| PQQ28_RS19795 (4014446) | 4014446..4015435 | - | 990 | WP_000778018.1 | ABC transporter substrate-binding protein | - |
| PQQ28_RS19800 (4015446) | 4015446..4017611 | - | 2166 | WP_000856947.1 | TonB-dependent receptor | - |
| PQQ28_RS19805 (4018094) | 4018094..4018903 | + | 810 | WP_001305362.1 | hypothetical protein | - |
| PQQ28_RS19810 (4019021) | 4019021..4019758 | - | 738 | WP_000019301.1 | hypothetical protein | - |
| PQQ28_RS19815 (4019986) | 4019986..4020588 | - | 603 | WP_001305361.1 | IS91 family transposase ISMno24 | Transposase |
| PQQ28_RS19820 (4020987) | 4020987..4022087 | + | 1101 | WP_001313577.1 | hypothetical protein | - |
| PQQ28_RS19825 (4022309) | 4022309..4022743 | + | 435 | WP_001069809.1 | hypothetical protein | - |
| PQQ28_RS19830 (4022961) | 4022961..4025357 | + | 2397 | WP_000544741.1 | dynamin family protein | - |
| PQQ28_RS19835 (4025354) | 4025354..4026259 | + | 906 | WP_000203555.1 | diguanylate cyclase regulator RdcB family protein | - |
| PQQ28_RS19840 (4026256) | 4026256..4027326 | + | 1071 | WP_000102646.1 | hypothetical protein | VF |
| PQQ28_RS19845 (4027455) | 4027455..4027922 | + | 468 | WP_001239911.1 | hypothetical protein | - |
| PQQ28_RS19850 (4027978) | 4027978..4028607 | + | 630 | WP_000680181.1 | hypothetical protein | - |
| PQQ28_RS19855 (4029042) | 4029042..4029494 | + | 453 | WP_000682723.1 | hypothetical protein | - |
| PQQ28_RS19860 (4029612) | 4029612..4029845 | + | 234 | WP_001213776.1 | DUF905 family protein | - |
| PQQ28_RS19865 (4029945) | 4029945..4030766 | + | 822 | WP_001234359.1 | DUF932 domain-containing protein | - |
| PQQ28_RS19870 (4030766) | 4030766..4031011 | + | 246 | WP_001164966.1 | hypothetical protein | - |
| PQQ28_RS19875 (4031105) | 4031105..4031578 | + | 474 | WP_001313575.1 | antirestriction protein | - |
| PQQ28_RS19880 (4031594) | 4031594..4032070 | + | 477 | WP_001313574.1 | RadC family protein | - |
| PQQ28_RS19885 (4032133) | 4032133..4032354 | + | 222 | WP_000692315.1 | DUF987 domain-containing protein | - |
| PQQ28_RS19890 (4032373) | 4032373..4033017 | + | 645 | WP_000086761.1 | hypothetical protein | - |
| PQQ28_RS19895 (4033067) | 4033067..4033441 | + | 375 | WP_001285481.1 | type IV toxin-antitoxin system YeeU family antitoxin | Antitoxin Detail |
| PQQ28_RS19900 (4033488) | 4033488..4033865 | + | 378 | WP_000854730.1 | TA system toxin CbtA family protein | Toxin Detail |
| PQQ28_RS19905 (4033862) | 4033862..4034354 | + | 493 | Protein_3831 | DUF5983 family protein | - |
| PQQ28_RS19910 (4034433) | 4034433..4035421 | - | 989 | Protein_3832 | IS630 family transposase IS630 | Transposase |
| PQQ28_RS19915 (4035569) | 4035569..4035757 | - | 189 | Protein_3833 | IS66 family transposase | - |
| PQQ28_RS19920 (4035818) | 4035818..4036951 | + | 1134 | WP_000555401.1 | IS110 family transposase ISEc45 | Transposase |
| PQQ28_RS19925 (4037205) | 4037205..4038609 | - | 1405 | Protein_3835 | IS66 family transposase ISEc47 | Transposase |
| PQQ28_RS19930 (4038640) | 4038640..4038990 | - | 351 | WP_000624707.1 | IS66 family transposase IS682 | Transposase |
| PQQ28_RS19935 (4038987) | 4038987..4039278 | - | 292 | Protein_3837 | IS66 family transposase ISEc43 | Transposase |
| PQQ28_RS19940 (4039320) | 4039320..4039514 | + | 195 | WP_001313570.1 | DUF957 domain-containing protein | - |
| PQQ28_RS19945 (4039596) | 4039596..4040453 | + | 858 | Protein_3839 | DUF4942 domain-containing protein | - |
| PQQ28_RS19955 (4040783) | 4040783..4041514 | - | 732 | WP_001308374.1 | DNA polymerase III subunit epsilon | - |
| PQQ28_RS19960 (4041579) | 4041579..4042046 | + | 468 | WP_000917878.1 | ribonuclease HI | - |
| PQQ28_RS19965 (4042043) | 4042043..4042765 | - | 723 | WP_001295200.1 | class I SAM-dependent methyltransferase | - |
| PQQ28_RS19970 (4042799) | 4042799..4043554 | + | 756 | WP_001052735.1 | hydroxyacylglutathione hydrolase | - |
| PQQ28_RS19975 (4043626) | 4043626..4044984 | + | 1359 | WP_000644685.1 | murein transglycosylase D | - |
| PQQ28_RS19980 (4045033) | 4045033..4045803 | - | 771 | WP_000211716.1 | class I SAM-dependent methyltransferase | - |
| PQQ28_RS19985 (4045881) | 4045881..4046681 | - | 801 | WP_001230983.1 | endonuclease/exonuclease/phosphatase family protein | - |
| PQQ28_RS19990 (4046922) | 4046922..4047836 | + | 915 | WP_000648563.1 | DNA-binding transcriptional regulator YafC | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|