MGE detailed information
MGE type: Non-Mobilizable plasmid MGE length: 95344 bp
Accession: NZ_CP117003 Location: 1..95344 Organism: Escherichia coli strain MLI108K3 Replicon: plasmid p95_MLI108-3
Accession: NZ_CP117003 Location: 1..95344 Organism: Escherichia coli strain MLI108K3 Replicon: plasmid p95_MLI108-3
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| NL411_RS00615 (NL411_000615) | 1..861 | + | 861 | WP_021546926.1 | replication protein RepA | - |
| NL411_RS00620 (NL411_000620) | 1261..2466 | + | 1206 | WP_000817632.1 | Plasmid partition protein A | VF |
| NL411_RS00625 (NL411_000625) | 2463..3428 | + | 966 | WP_000725192.1 | ParB family protein | - |
| NL411_RS00630 (NL411_000630) | 3693..3917 | + | 225 | WP_094653748.1 | IS6 family transposase IS15 | Transposase |
| NL411_RS00635 (NL411_000635) | 3929..4633 | + | 705 | WP_001067855.1 | IS6 family transposase IS26 | Transposase |
| NL411_RS00640 (NL411_000640) | 4703..4948 | - | 246 | Protein_5 | IS3 family transposase ISEhe3 | Transposase |
| NL411_RS00645 (NL411_000645) | 4968..5402 | + | 435 | Protein_6 | GNAT family N-acetyltransferase | - |
| NL411_RS00655 (NL411_000655) | 6529..7533 | + | 1005 | WP_021546935.1 | IS110 family transposase IS4321R | Transposase |
| NL411_RS00660 (NL411_000660) | 7823..8101 | + | 279 | Protein_9 | IS3 family transposase | - |
| NL411_RS00665 (NL411_000665) | 8209..10254 | - | 2046 | WP_048659818.1 | protease Lon-related BREX system protein BrxL | - |
| NL411_RS00670 (NL411_000670) | 10316..12973 | - | 2658 | WP_004011547.1 | BREX-1 system phosphatase PglZ type A | - |
| NL411_RS00675 (NL411_000675) | 12973..16602 | - | 3630 | WP_021546937.1 | BREX-1 system adenine-specific DNA-methyltransferase PglX | - |
| NL411_RS00680 (NL411_000680) | 16618..18381 | - | 1764 | WP_021546938.1 | DUF262 domain-containing protein | - |
| NL411_RS00685 (NL411_000685) | 18398..22075 | - | 3678 | WP_000687847.1 | BREX system P-loop protein BrxC | - |
| NL411_RS00690 (NL411_000690) | 22094..22678 | - | 585 | WP_000645940.1 | DUF1788 domain-containing protein | - |
| NL411_RS00695 (NL411_000695) | 22675..23274 | - | 600 | WP_001021938.1 | DUF1819 family protein | - |
| NL411_RS00700 (NL411_000700) | 23284..24210 | - | 927 | WP_000617209.1 | WYL domain-containing protein | - |
| NL411_RS00705 (NL411_000705) | 24279..24596 | - | 318 | WP_032156934.1 | hypothetical protein | - |
| NL411_RS00710 (NL411_000710) | 24820..24999 | + | 180 | WP_012600012.1 | hypothetical protein | - |
| NL411_RS00715 (NL411_000715) | 25031..25642 | - | 612 | Protein_20 | IS3 family transposase ISRaq1 | Transposase |
| NL411_RS00720 (NL411_000720) | 26389..26658 | + | 270 | WP_021546940.1 | type II toxin-antitoxin system antitoxin YacA | Antitoxin Detail |
| NL411_RS00725 (NL411_000725) | 26658..26936 | + | 279 | WP_001384452.1 | type II toxin-antitoxin system toxin YacB | Toxin Detail |
| NL411_RS00730 (NL411_000730) | 26982..27194 | + | 213 | Protein_23 | 3'-5' exonuclease | - |
| NL411_RS00735 (NL411_000735) | 27289..27525 | + | 237 | WP_223417154.1 | transposase | - |
| NL411_RS00740 (NL411_000740) | 27778..29529 | - | 1752 | Protein_25 | Tn3 family transposase TnpA_TnAs1 | Transposase |
| NL411_RS00745 (NL411_000745) | 29533..29925 | + | 393 | WP_001351729.1 | isochorismatase family cysteine hydrolase | - |
| NL411_RS00750 (NL411_000750) | 30063..30947 | + | 885 | WP_000058717.1 | EamA family transporter | - |
| NL411_RS00755 (NL411_000755) | 30979..32178 | - | 1200 | WP_000804064.1 | Tetracycline resistance protein, class C | ARG |
| NL411_RS00760 (NL411_000760) | 32284..32934 | + | 651 | WP_000164043.1 | tetracycline resistance transcriptional repressor TetR(A) | - |
| NL411_RS00765 (NL411_000765) | 32966..33208 | - | 243 | WP_000844627.1 | transposase | - |
| NL411_RS00770 (NL411_000770) | 33266..34084 | - | 819 | Protein_31 | Tn3 family transposase TnpA_TnAs1 | Transposase |
| NL411_RS00775 (NL411_000775) | 34145..34849 | + | 705 | WP_001067855.1 | IS6 family transposase IS26 | Transposase |
| NL411_RS00780 (NL411_000780) | 34795..35907 | - | 1113 | WP_024166810.1 | IS91 family transposase ISAzo26 | Transposase |
| NL411_RS00785 (NL411_000785) | 36063..36536 | + | 474 | WP_004201280.1 | Dihydrofolate reductase type 1 | ARG |
| NL411_RS00790 (NL411_000790) | 36783..37487 | + | 705 | WP_001067855.1 | IS6 family transposase IS26 | Transposase |
| NL411_RS00795 (NL411_000795) | 37539..39305 | + | 1767 | Protein_36 | Tn3 family transposase TnpA_ISPa38 | Transposase |
| NL411_RS00800 (NL411_000800) | 39384..40388 | + | 1005 | WP_000427619.1 | IS110 family transposase IS5075 | Transposase |
| NL411_RS00805 (NL411_000805) | 40660..40746 | - | 87 | Protein_38 | Arm DNA-binding domain-containing protein | - |
| NL411_RS00810 (NL411_000810) | 41076..41891 | + | 816 | WP_001043260.1 | Dihydropteroate synthase | ARG |
| NL411_RS00815 (NL411_000815) | 41952..42755 | + | 804 | WP_001082319.1 | Aminoglycoside 3'-phosphotransferase | ARG |
| NL411_RS00820 (NL411_000820) | 42755..43591 | + | 837 | WP_000480968.1 | hypothetical protein | ARG |
| NL411_RS00825 (NL411_000825) | 43698..44102 | - | 405 | Protein_42 | IS91 family transposase ISPps1 | Transposase |
| NL411_RS00830 (NL411_000830) | 44312..45172 | - | 861 | WP_000027057.1 | Beta-lactamase TEM | ARG |
| NL411_RS00835 (NL411_000835) | 45355..45912 | - | 558 | WP_001235713.1 | Tn3 family transposase TnpR_Tn3 | Transposase |
| NL411_RS00840 (NL411_000840) | 46076..46294 | + | 219 | WP_001143771.1 | Tn3 family transposase TnpA_Tn3 | Transposase |
| NL411_RS00845 (NL411_000845) | 46476..47738 | + | 1263 | WP_000608644.1 | IS1380 family transposase ISEcp1 | Transposase |
| NL411_RS00850 (NL411_000850) | 47994..48869 | + | 876 | WP_000239590.1 | Beta-lactamase CTX-M-1 | ARG |
| NL411_RS00855 (NL411_000855) | 48916..49248 | - | 333 | WP_001393253.1 | WbuC family cupin fold metalloprotein | - |
| NL411_RS00860 (NL411_000860) | 49262..50020 | + | 759 | Protein_49 | Tn3 family transposase TnpA_Tn3 | Transposase |
| NL411_RS00865 (NL411_000865) | 50034..51380 | - | 1347 | WP_000483767.1 | IS4 family transposase IS4 | Transposase |
| NL411_RS00870 (NL411_000870) | 51447..53495 | + | 2049 | Protein_51 | Tn3 family transposase TnpA_Tn3 | Transposase |
| NL411_RS00875 (NL411_000875) | 53538..54553 | - | 1016 | Protein_52 | IS3 family transposase ISEc36 | Transposase |
| NL411_RS00880 (NL411_000880) | 54948..55604 | + | 657 | WP_001516695.1 | Pentapeptide repeat protein | ARG |
| NL411_RS00885 (NL411_000885) | 55923..56351 | - | 429 | Protein_54 | Tn3 family transposase TnpR_ISMex22 | Transposase |
| NL411_RS00890 (NL411_000890) | 56384..57775 | - | 1392 | WP_001493761.1 | ISKra4 family transposase ISKpn19 | Transposase |
| NL411_RS00895 (NL411_000895) | 57812..58384 | - | 573 | WP_001493762.1 | Tn3 family transposase TnpR_ISPa40 | Transposase |
| NL411_RS00900 (NL411_000900) | 58521..59066 | - | 546 | WP_001493763.1 | plasmid pRiA4b ORF-3 family protein | - |
| NL411_RS00905 (NL411_000905) | 59201..59362 | - | 162 | Protein_58 | type II toxin-antitoxin system mRNA interferase RelE | - |
| NL411_RS00910 (NL411_000910) | 59362..59601 | - | 240 | WP_000534857.1 | type II toxin-antitoxin system antitoxin RelB | - |
| NL411_RS00915 (NL411_000915) | 59626..59730 | + | 105 | Protein_60 | protein YdfV | - |
| NL411_RS00920 (NL411_000920) | 59982..61979 | + | 1998 | WP_005032116.1 | choline BCCT transporter BetT | - |
| NL411_RS00925 (NL411_000925) | 62043..63320 | + | 1278 | WP_000625667.1 | DUF2254 domain-containing protein | - |
| NL411_RS00930 (NL411_000930) | 63870..64567 | + | 698 | WP_103215986.1 | IS1 family transposase IS1R | Transposase |
| NL411_RS00935 (NL411_000935) | 64893..65870 | + | 978 | WP_000600827.1 | IS91 family transposase ISWz1 | Transposase |
| NL411_RS00940 (NL411_000940) | 65918..66181 | - | 264 | WP_001531263.1 | hypothetical protein | - |
| NL411_RS00945 (NL411_000945) | 66216..67766 | - | 1551 | Protein_66 | Tn3 family transposase TnpA_TnAs1 | Transposase |
| NL411_RS00950 (NL411_000950) | 67821..68525 | - | 705 | WP_001067852.1 | IS6 family transposase IS26 | Transposase |
| NL411_RS00955 (NL411_000955) | 68871..69680 | + | 810 | WP_000161640.1 | hypothetical protein | - |
| NL411_RS00960 (NL411_000960) | 69777..70379 | - | 603 | WP_001752951.1 | IS91 family transposase ISMno24 | Transposase |
| NL411_RS00965 (NL411_000965) | 70520..71950 | - | 1431 | WP_001460374.1 | hypothetical protein | - |
| NL411_RS00970 (NL411_000970) | 72137..72834 | + | 698 | WP_103215986.1 | IS1 family transposase IS1R | Transposase |
| NL411_RS00975 (NL411_000975) | 72965..73627 | + | 663 | WP_000958205.1 | Type IV secretion system protein virB1 | VF |
| NL411_RS00980 (NL411_000980) | 73638..73937 | + | 300 | WP_000175462.1 | TrbC/VirB2 family protein | - |
| NL411_RS00985 (NL411_000985) | 73947..76697 | + | 2751 | WP_048659795.1 | Type IV secretion system protein virB4 | VF |
| NL411_RS00990 (NL411_000990) | 76716..77432 | + | 717 | WP_000770034.1 | type IV secretion system protein | - |
| NL411_RS00995 (NL411_000995) | 77444..77728 | + | 285 | WP_000769859.1 | EexN family lipoprotein | - |
| NL411_RS01000 (NL411_001000) | 77746..78753 | + | 1008 | WP_000014166.1 | type IV secretion system protein | - |
| NL411_RS01005 (NL411_001005) | 78830..78970 | + | 141 | WP_000873539.1 | hypothetical protein | - |
| NL411_RS01010 (NL411_001010) | 78963..79649 | + | 687 | WP_001293055.1 | type IV secretion system protein | - |
| NL411_RS01015 (NL411_001015) | 79642..80535 | + | 894 | WP_001045307.1 | P-type conjugative transfer protein VirB9 | - |
| NL411_RS01020 (NL411_001020) | 80532..81728 | + | 1197 | WP_000980841.1 | Type IV secretion system protein virB10 | VF |
| NL411_RS01025 (NL411_001025) | 81732..82781 | + | 1050 | WP_000342114.1 | Type IV secretion system protein VirB11 | VF |
| NL411_RS01030 (NL411_001030) | 82768..83169 | + | 402 | WP_000979494.1 | cag pathogenicity island Cag12 family protein | - |
| NL411_RS01035 (NL411_001035) | 83260..83577 | + | 318 | WP_000683352.1 | TrbM/KikA/MpfK family conjugal transfer protein | - |
| NL411_RS01040 (NL411_001040) | 83604..83939 | + | 336 | WP_000610141.1 | hypothetical protein | - |
| NL411_RS01045 (NL411_001045) | 83915..84223 | + | 309 | WP_000212005.1 | hypothetical protein | - |
| NL411_RS01050 (NL411_001050) | 84220..86421 | + | 2202 | WP_023281073.1 | type IA DNA topoisomerase | - |
| NL411_RS01055 (NL411_001055) | 86418..86810 | + | 393 | WP_001079960.1 | H-NS family nucleoid-associated regulatory protein | - |
| NL411_RS01060 (NL411_001060) | 87519..89426 | + | 1908 | WP_033546593.1 | type IV secretion system DNA-binding domain-containing protein | - |
| NL411_RS01065 (NL411_001065) | 89441..90187 | + | 747 | WP_000909125.1 | MobC family replication-relaxation protein | - |
| NL411_RS01070 (NL411_001070) | 90180..90707 | + | 528 | WP_048659789.1 | Phospholipase D | VF |
| NL411_RS01075 (NL411_001075) | 90739..91170 | - | 432 | WP_001776120.1 | hypothetical protein | - |
| NL411_RS01080 (NL411_001080) | 91302..91478 | - | 177 | WP_013438824.1 | hypothetical protein | - |
| NL411_RS01085 (NL411_001085) | 91650..92615 | - | 966 | WP_023281075.1 | zincin-like metallopeptidase domain-containing protein | - |
| NL411_RS01090 (NL411_001090) | 93067..93177 | + | 111 | Protein_95 | peptidase | - |
| NL411_RS01095 (NL411_001095) | 93294..93482 | + | 189 | WP_048230572.1 | hypothetical protein | - |
| NL411_RS01100 (NL411_001100) | 93492..94691 | + | 1200 | WP_000948429.1 | IS91 family transposase ISSbo1 | Transposase |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|