MGE detailed information
MGE type: Prophage MGE length: 62423 bp
Accession: NZ_CP116923 Location: 2266929..2329351 Organism: Escherichia coli strain MLI104K1 Replicon: chromosome
Accession: NZ_CP116923 Location: 2266929..2329351 Organism: Escherichia coli strain MLI104K1 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| NL419_RS11500 (2262828) | 2262828..2264048 | + | 1221 | WP_000225276.1 | DNA-binding transcriptional repressor Mlc | - |
| NL419_RS11505 (2264173) | 2264173..2264868 | + | 696 | WP_000919226.1 | dethiobiotin synthase | - |
| NL419_RS11510 (2264821) | 2264821..2266113 | - | 1293 | WP_071593517.1 | voltage-gated ClC-type chloride channel ClcB | - |
| NL419_RS11515 (2266272) | 2266272..2266886 | - | 615 | WP_000148710.1 | Tat proofreading chaperone DmsD | - |
| NL419_RS11520 (2266929) | 2266929..2267783 | - | 855 | WP_000526503.1 | dimethyl sulfoxide reductase anchor subunit family protein | - |
| NL419_RS11525 (2267785) | 2267785..2268402 | - | 618 | WP_000213028.1 | dimethylsulfoxide reductase subunit B | - |
| NL419_RS11530 (2268413) | 2268413..2270836 | - | 2424 | Protein_2162 | dimethyl sulfoxide reductase subunit A | - |
| NL419_RS11535 (2270897) | 2270897..2273323 | - | 2427 | WP_000041681.1 | DmsA/YnfE/YnfF family dimethyl sulfoxide reductase | - |
| NL419_RS11540 (2273522) | 2273522..2273827 | - | 306 | WP_072667322.1 | DUF1161 domain-containing protein | - |
| NL419_RS11545 (2273935) | 2273935..2274645 | + | 711 | WP_001321287.1 | YnfC family lipoprotein | - |
| NL419_RS11550 (2274648) | 2274648..2275208 | - | 561 | WP_001138581.1 | spermidine N1-acetyltransferase | - |
| NL419_RS11555 (2275243) | 2275243..2275584 | - | 342 | WP_000705211.1 | DUF1283 family protein | - |
| NL419_RS11560 (2275719) | 2275719..2276045 | + | 327 | WP_000598292.1 | YnfA family protein | - |
| NL419_RS11565 (2276251) | 2276251..2277465 | + | 1215 | WP_255055551.1 | starvation-sensing protein RspA | - |
| NL419_RS11570 (2277477) | 2277477..2278496 | + | 1020 | WP_000836066.1 | Zn-dependent oxidoreductase | - |
| NL419_RS11575 (2278684) | 2278684..2279964 | - | 1281 | WP_139244249.1 | Putative defective protein IntQ ; Integrase | Integrase |
| NL419_RS11580 (2279999) | 2279999..2280250 | - | 252 | WP_000005552.1 | excisionase family protein | - |
| NL419_RS11585 (2280323) | 2280323..2282794 | - | 2472 | WP_060617814.1 | exonuclease | - |
| NL419_RS11595 (2284211) | 2284211..2284632 | + | 422 | Protein_2175 | hypothetical protein | - |
| NL419_RS11600 (2285267) | 2285267..2285638 | + | 372 | WP_001406656.1 | ISNCY family transposase ISRel10 | Transposase |
| NL419_RS11605 (2285676) | 2285676..2286338 | + | 663 | Protein_2177 | ISNCY family transposase ISCARN112 | Transposase |
| NL419_RS11610 (2286459) | 2286459..2286608 | + | 150 | WP_011443592.1 | ISNCY family transposase ISCARN112 | Transposase |
| NL419_RS11615 (2287045) | 2287045..2287377 | - | 333 | Protein_2179 | FlxA-like family protein | - |
| NL419_RS11620 (2287268) | 2287268..2287561 | - | 294 | WP_255055842.1 | hypothetical protein | - |
| NL419_RS11625 (2287640) | 2287640..2287705 | - | 66 | Protein_2181 | hypothetical protein | - |
| NL419_RS11630 (2287764) | 2287764..2288732 | - | 969 | WP_012904651.1 | IS5 family transposase IS903B | Transposase |
| NL419_RS11635 (2288766) | 2288766..2288951 | - | 186 | Protein_2183 | protein YdfV | - |
| NL419_RS11640 (2288976) | 2288976..2289215 | + | 240 | WP_000534858.1 | type II toxin-antitoxin system antitoxin RelB | Antitoxin Detail |
| NL419_RS11645 (2289215) | 2289215..2289502 | + | 288 | WP_000323025.1 | type II toxin-antitoxin system mRNA interferase RelE | Toxin Detail |
| NL419_RS11650 (2289574) | 2289574..2289729 | + | 156 | WP_000813254.1 | type I toxin-antitoxin system toxin HokD | - |
| NL419_RS11655 (2289946) | 2289946..2290197 | + | 252 | WP_001463433.1 | protein Rem | - |
| NL419_RS11660 (2290264) | 2290264..2290542 | + | 279 | WP_001515373.1 | hypothetical protein | - |
| NL419_RS11665 (2290544) | 2290544..2291593 | + | 1050 | WP_001515372.1 | DUF968 domain-containing protein | - |
| NL419_RS11670 (2291611) | 2291611..2291922 | + | 312 | WP_072667520.1 | antiterminator Q family protein | - |
| NL419_RS11680 (2293405) | 2293405..2293929 | - | 525 | WP_000780584.1 | lipocalin family protein | - |
| NL419_RS11685 (2294062) | 2294062..2294759 | + | 698 | Protein_2193 | IS1 family transposase IS1R | Transposase |
| NL419_RS11690 (2295154) | 2295154..2295867 | + | 714 | WP_001146314.1 | HTH-type transcriptional regulator GadW | VF |
| NL419_RS11695 (2296058) | 2296058..2296273 | + | 216 | WP_001515371.1 | phage lysis protein EssD | - |
| NL419_RS11700 (2296278) | 2296278..2296592 | + | 315 | WP_001515370.1 | YdfR family protein | - |
| NL419_RS11705 (2296648) | 2296648..2297181 | + | 534 | WP_001515369.1 | lysozyme | - |
| NL419_RS11710 (2297178) | 2297178..2297675 | + | 498 | WP_001071769.1 | DUF2514 domain-containing protein | - |
| NL419_RS11715 (2298037) | 2298037..2298249 | + | 213 | WP_000066495.1 | cold shock protein CspI | - |
| NL419_RS11720 (2298260) | 2298260..2298448 | + | 189 | WP_071524604.1 | cold-shock protein | - |
| NL419_RS11725 (2298451) | 2298451..2298516 | + | 66 | WP_120795388.1 | small protein YnfR | - |
| NL419_RS11730 (2298574) | 2298574..2298750 | + | 177 | WP_012304871.1 | hypothetical protein | - |
| NL419_RS11735 (2298922) | 2298922..2299095 | + | 174 | WP_001019606.1 | addiction module toxin, GnsA/GnsB family | - |
| NL419_RS11740 (2299247) | 2299247..2299657 | - | 411 | WP_000373090.1 | DUF1398 domain-containing protein | - |
| NL419_RS11745 (2299715) | 2299715..2299948 | - | 234 | WP_001368374.1 | YlcI/YnfO family protein | - |
| NL419_RS11750 (2300337) | 2300337..2300882 | + | 546 | WP_000453611.1 | DNA-packaging protein | - |
| NL419_RS11755 (2300857) | 2300857..2302782 | + | 1926 | WP_001027297.1 | phage terminase large subunit family protein | - |
| NL419_RS11760 (2302779) | 2302779..2302985 | + | 207 | WP_000198149.1 | gpW family protein | - |
| NL419_RS11765 (2302982) | 2302982..2304583 | + | 1602 | WP_001316944.1 | phage portal protein | - |
| NL419_RS11770 (2304564) | 2304564..2305883 | + | 1320 | WP_000123271.1 | S49 family peptidase | - |
| NL419_RS11775 (2305893) | 2305893..2306225 | + | 333 | WP_001299443.1 | head decoration protein | - |
| NL419_RS11780 (2306281) | 2306281..2307306 | + | 1026 | WP_000063238.1 | major capsid protein | - |
| NL419_RS11785 (2307348) | 2307348..2307743 | + | 396 | WP_000158875.1 | DNA-packaging protein FI | - |
| NL419_RS11790 (2307755) | 2307755..2308108 | + | 354 | WP_000785282.1 | head-tail joining protein | - |
| NL419_RS11795 (2308120) | 2308120..2308698 | + | 579 | WP_000975081.1 | phage tail protein | - |
| NL419_RS11800 (2308695) | 2308695..2309090 | + | 396 | WP_000683129.1 | phage minor tail U family protein | - |
| NL419_RS11805 (2309098) | 2309098..2309838 | + | 741 | WP_001361512.1 | phage tail protein | - |
| NL419_RS11810 (2309854) | 2309854..2310276 | + | 423 | WP_000479193.1 | phage minor tail protein G | - |
| NL419_RS11815 (2310258) | 2310258..2310692 | + | 435 | WP_016242135.1 | phage tail assembly protein T | - |
| NL419_RS11820 (2310685) | 2310685..2313264 | + | 2580 | WP_000840337.1 | phage tail tape measure protein | - |
| NL419_RS11825 (2313261) | 2313261..2313590 | + | 330 | WP_001543782.1 | phage tail protein | - |
| NL419_RS11830 (2313590) | 2313590..2314288 | + | 699 | WP_001152624.1 | phage minor tail protein L | - |
| NL419_RS11835 (2314294) | 2314294..2315037 | + | 744 | WP_000194780.1 | C40 family peptidase | - |
| NL419_RS11840 (2315034) | 2315034..2315606 | + | 573 | WP_000847666.1 | tail assembly protein | - |
| NL419_RS11845 (2315667) | 2315667..2319065 | + | 3399 | WP_016242134.1 | host specificity protein J | - |
| NL419_RS11850 (2319132) | 2319132..2319731 | + | 600 | WP_001230352.1 | Outer membrane protein X | VF |
| NL419_RS11855 (2319796) | 2319796..2322819 | + | 3024 | WP_024195673.1 | phage tail protein | - |
| NL419_RS11860 (2322819) | 2322819..2323394 | + | 576 | WP_072667395.1 | tail fiber assembly protein | - |
| NL419_RS11865 (2323492) | 2323492..2324082 | - | 591 | WP_000086527.1 | Tn3 family transposase TnpR_ISSba14 | Transposase |
| NL419_RS11870 (2324399) | 2324399..2324632 | - | 234 | WP_000836768.1 | cold shock protein YdfK | - |
| NL419_RS11875 (2324701) | 2324701..2324814 | - | 114 | WP_120795384.1 | YnaM/YnfT family protein | - |
| NL419_RS11880 (2325419) | 2325419..2326701 | + | 1283 | Protein_2232 | MHS family MFS transporter YdfJ | - |
| NL419_RS11885 (2326790) | 2326790..2328250 | + | 1461 | WP_255055730.1 | mannitol dehydrogenase family protein | - |
| NL419_RS11890 (2328285) | 2328285..2328488 | - | 204 | WP_000214712.1 | putative selenium delivery protein YdfZ | - |
| NL419_RS11895 (2328665) | 2328665..2329351 | - | 687 | WP_000215549.1 | DNA-binding transcriptional regulator rspR | - |
| NL419_RS11900 (2329440) | 2329440..2330186 | - | 747 | WP_000636571.1 | bifunctional NADP-dependent 3-hydroxy acid dehydrogenase/3-hydroxypropionate dehydrogenase YdfG | - |
| NL419_RS11905 (2330323) | 2330323..2332368 | + | 2046 | WP_000210373.1 | peptidyl-dipeptidase Dcp | - |
| NL419_RS11910 (2332412) | 2332412..2332930 | - | 519 | WP_255055729.1 | 2-oxo-tetronate isomerase | - |
| NL419_RS11915 (2333206) | 2333206..2333598 | + | 393 | WP_000671737.1 | YdeI family stress tolerance OB fold protein | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|