MGE detailed information
MGE type: Prophage MGE length: 51859 bp
Accession: NZ_CP116188 Location: 3952534..4004392 Organism: Escherichia coli strain DETEC-E223 Replicon: chromosome
Accession: NZ_CP116188 Location: 3952534..4004392 Organism: Escherichia coli strain DETEC-E223 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| PIC88_RS19270 (3947885) | 3947885..3948844 | + | 960 | WP_000765976.1 | sugar phosphate isomerase/epimerase family protein | - |
| PIC88_RS19275 (3948866) | 3948866..3949243 | + | 378 | WP_271293243.1 | RidA family protein | - |
| PIC88_RS19280 (3949258) | 3949258..3950490 | + | 1233 | WP_001389184.1 | MFS transporter | - |
| PIC88_RS19285 (3950755) | 3950755..3951480 | - | 726 | Protein_3772 | transposase | - |
| PIC88_RS19290 (3951511) | 3951511..3951861 | - | 351 | WP_000624710.1 | IS66 family insertion sequence element accessory protein TnpB | - |
| PIC88_RS19295 (3951858) | 3951858..3952277 | - | 420 | WP_000422706.1 | transposase | - |
| PIC88_RS19305 (3954021) | 3954021..3954977 | + | 957 | WP_000301136.1 | NotI family restriction endonuclease | - |
| PIC88_RS19310 (3954958) | 3954958..3955887 | - | 930 | WP_001328257.1 | DNA (cytosine-5-)-methyltransferase | - |
| PIC88_RS19315 (3956079) | 3956079..3956244 | - | 166 | Protein_3778 | integrase | - |
| PIC88_RS19320 (3956356) | 3956356..3957927 | - | 1572 | WP_089570341.1 | IS66 family transposase ISCro1 | Transposase |
| PIC88_RS19325 (3957947) | 3957947..3958294 | - | 348 | WP_000624622.1 | IS66 family transposase ISCro1 | Transposase |
| PIC88_RS19330 (3958294) | 3958294..3958971 | - | 678 | WP_032147602.1 | IS66 family transposase ISCro1 | Transposase |
| PIC88_RS19335 (3959034) | 3959034..3959132 | + | 99 | WP_000745631.1 | IS3 family transposase ISRaq1 | Transposase |
| PIC88_RS19340 (3959112) | 3959112..3959408 | + | 297 | Protein_3783 | transposase | - |
| PIC88_RS19345 (3959555) | 3959555..3960745 | - | 1191 | Protein_3784 | IS3 family transposase | - |
| PIC88_RS19350 (3960960) | 3960960..3962507 | - | 1548 | WP_001294844.1 | hypothetical protein | - |
| PIC88_RS19355 (3962507) | 3962507..3967465 | - | 4959 | WP_000877066.1 | AAA domain-containing protein | - |
| PIC88_RS19360 (3967673) | 3967673..3967828 | + | 156 | Protein_3787 | integrase | - |
| PIC88_RS19365 (3967865) | 3967865..3968479 | - | 615 | Protein_3788 | IS3 family transposase ISEc48 | Transposase |
| PIC88_RS19370 (3968667) | 3968667..3968996 | + | 330 | WP_000042910.1 | IS66 family transposase ISEc49 | Transposase |
| PIC88_RS19375 (3968983) | 3968983..3969375 | + | 393 | WP_000950652.1 | IS66 family transposase ISEc49 | Transposase |
| PIC88_RS19380 (3969382) | 3969382..3970256 | + | 875 | Protein_3791 | IS66 family transposase ISEc49 | Transposase |
| PIC88_RS19385 (3970252) | 3970252..3971061 | - | 810 | Protein_3792 | hypothetical protein | VF |
| PIC88_RS19390 (3971025) | 3971025..3972704 | - | 1680 | Protein_3793 | hypothetical protein | VF |
| PIC88_RS19395 (3972697) | 3972697..3972867 | - | 171 | Protein_3794 | hypothetical protein | - |
| PIC88_RS19400 (3972956) | 3972956..3973468 | - | 513 | WP_271293244.1 | hypothetical protein | - |
| PIC88_RS19405 (3973734) | 3973734..3973970 | - | 237 | WP_000958152.1 | AlpA family transcriptional regulator | - |
| PIC88_RS19410 (3974039) | 3974039..3974611 | - | 573 | WP_271293245.1 | hypothetical protein | - |
| PIC88_RS19415 (3974869) | 3974869..3975435 | - | 567 | WP_001126801.1 | inovirus-type Gp2 protein | - |
| PIC88_RS19420 (3976600) | 3976600..3977813 | - | 1214 | Protein_3799 | IS3 family transposase | - |
| PIC88_RS19425 (3977851) | 3977851..3979015 | + | 1165 | Protein_3800 | IS256 family transposase ISSod4 | Transposase |
| PIC88_RS19430 (3979195) | 3979195..3981243 | - | 2049 | WP_000792543.1 | TonB-dependent siderophore receptor IreA | - |
| PIC88_RS19435 (3981437) | 3981437..3982665 | + | 1229 | WP_271293246.1 | IS3 family transposase IS2 | Transposase |
| PIC88_RS19440 (3982776) | 3982776..3983507 | - | 732 | WP_271293247.1 | inovirus Gp2 family protein | - |
| PIC88_RS19445 (3985026) | 3985026..3986156 | - | 1131 | WP_000147745.1 | hypothetical protein | - |
| PIC88_RS19450 (3986341) | 3986341..3987225 | + | 885 | WP_000010402.1 | 50S ribosome-binding GTPase | - |
| PIC88_RS19455 (3987428) | 3987428..3988108 | + | 681 | WP_001282919.1 | WYL domain-containing protein | - |
| PIC88_RS19460 (3988256) | 3988256..3988933 | + | 678 | WP_001097302.1 | hypothetical protein | - |
| PIC88_RS19465 (3988939) | 3988939..3989172 | + | 234 | WP_001278287.1 | DUF905 family protein | - |
| PIC88_RS19470 (3989262) | 3989262..3990080 | + | 819 | WP_001175148.1 | DUF932 domain-containing protein | - |
| PIC88_RS19475 (3990162) | 3990162..3990641 | + | 480 | WP_000844100.1 | antirestriction protein | - |
| PIC88_RS19480 (3990657) | 3990657..3991133 | + | 477 | WP_001366855.1 | RadC family protein | - |
| PIC88_RS19485 (3991196) | 3991196..3991417 | + | 222 | WP_000692309.1 | DUF987 domain-containing protein | - |
| PIC88_RS19490 (3991497) | 3991497..3991871 | + | 375 | WP_001285415.1 | type IV toxin-antitoxin system YeeU family antitoxin | Antitoxin Detail |
| PIC88_RS19495 (3991918) | 3991918..3992295 | + | 378 | WP_000854735.1 | TA system toxin CbtA family protein | Toxin Detail |
| PIC88_RS19500 (3992292) | 3992292..3992780 | + | 489 | WP_000761676.1 | DUF5983 family protein | - |
| PIC88_RS19505 (3992792) | 3992792..3992989 | + | 198 | WP_000839291.1 | DUF957 domain-containing protein | - |
| PIC88_RS19510 (3993074) | 3993074..3993940 | + | 867 | WP_001280433.1 | DUF4942 domain-containing protein | - |
| PIC88_RS19515 (3994012) | 3994012..3994275 | + | 264 | WP_001143297.1 | type II toxin-antitoxin system ParD family antitoxin | - |
| PIC88_RS19520 (3994272) | 3994272..3994598 | + | 327 | WP_000779483.1 | type II toxin-antitoxin system RelE/ParE family toxin | - |
| PIC88_RS19525 (3995062) | 3995062..3996324 | + | 1263 | WP_033554035.1 | Prophage integrase IntA ; Integrase | Integrase |
| PIC88_RS19530 (3996510) | 3996510..3997199 | - | 690 | Protein_3821 | IS1 family transposase | - |
| PIC88_RS19535 (3997337) | 3997337..3998012 | + | 676 | Protein_3822 | IS1 family transposase IS1N | Transposase |
| PIC88_RS19540 (3998648) | 3998648..3998995 | + | 348 | WP_001616050.1 | alcohol dehydrogenase catalytic domain-containing protein | - |
| PIC88_RS19545 (3999065) | 3999065..3999322 | + | 258 | Protein_3824 | IS3 family transposase IS911 | Transposase |
| PIC88_RS19550 (3999335) | 3999335..3999494 | - | 160 | Protein_3825 | IS3 family transposase IS911 | Transposase |
| PIC88_RS19555 (3999563) | 3999563..4000543 | - | 981 | WP_047928846.1 | IS5 family transposase ISKpn26 | Transposase |
| PIC88_RS19560 (4000724) | 4000724..4000858 | + | 135 | Protein_3827 | hypothetical protein | - |
| PIC88_RS19565 (4000965) | 4000965..4002164 | + | 1200 | Protein_3828 | IS3 family transposase IS629 | Transposase |
| PIC88_RS19570 (4002455) | 4002455..4003033 | + | 579 | WP_032298845.1 | TetR/AcrR family transcriptional regulator | - |
| PIC88_RS19575 (4003056) | 4003056..4003874 | + | 819 | WP_001270145.1 | winged helix-turn-helix domain-containing protein | - |
| PIC88_RS19580 (4003874) | 4003874..4004392 | + | 519 | WP_001217009.1 | FidL-like protein | - |
| PIC88_RS19585 (4004912) | 4004912..4005190 | + | 279 | WP_000502008.1 | BMC domain-containing protein | - |
| PIC88_RS19590 (4005208) | 4005208..4005492 | + | 285 | WP_000502010.1 | BMC domain-containing protein | - |
| PIC88_RS19595 (4005507) | 4005507..4005785 | + | 279 | WP_001206281.1 | BMC domain-containing protein | - |
| PIC88_RS19600 (4005839) | 4005839..4007425 | + | 1587 | WP_050491571.1 | acetaldehyde dehydrogenase (acetylating) | - |
| PIC88_RS19605 (4007452) | 4007452..4007709 | + | 258 | WP_000599365.1 | EutN/CcmL family microcompartment protein | - |
| PIC88_RS19610 (4007725) | 4007725..4008879 | + | 1155 | WP_001288714.1 | 1-propanol dehydrogenase PduQ | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|