MGE detailed information
MGE type: Integrative_Conjugative_Elements MGE length: 90789 bp
Accession: NZ_CP116094 Location: 3886306..3977094 Organism: Escherichia coli strain DETEC-S560 Replicon: chromosome
Accession: NZ_CP116094 Location: 3886306..3977094 Organism: Escherichia coli strain DETEC-S560 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| PIC78_RS18750 (3883251) | 3883251..3884207 | + | 957 | WP_000301136.1 | NotI family restriction endonuclease | - |
| PIC78_RS18755 (3884188) | 3884188..3885117 | - | 930 | WP_001328257.1 | DNA (cytosine-5-)-methyltransferase | - |
| PIC78_RS18760 (3885309) | 3885309..3885426 | - | 118 | Protein_3659 | integrase | - |
| PIC78_RS18765 (3885513) | 3885513..3886535 | + | 1023 | WP_096089616.1 | IS21-like element IS100 family transposase | - |
| PIC78_RS18770 (3886532) | 3886532..3887314 | + | 783 | WP_001300609.1 | IS21 family transposase IS100kyp | Transposase |
| PIC78_RS18775 (3887516) | 3887516..3887566 | + | 51 | Protein_3662 | IS3 family transposase ISRaq1 | Transposase |
| PIC78_RS18780 (3887594) | 3887594..3887890 | + | 297 | Protein_3663 | transposase | - |
| PIC78_RS18785 (3888037) | 3888037..3889227 | - | 1191 | Protein_3664 | IS3 family transposase | - |
| PIC78_RS18790 (3889442) | 3889442..3890989 | - | 1548 | WP_001294844.1 | hypothetical protein | - |
| PIC78_RS18795 (3890989) | 3890989..3895947 | - | 4959 | WP_000877066.1 | AAA domain-containing protein | - |
| PIC78_RS18800 (3896155) | 3896155..3896310 | + | 156 | Protein_3667 | integrase | - |
| PIC78_RS18805 (3896347) | 3896347..3896961 | - | 615 | Protein_3668 | IS3 family transposase ISEc48 | Transposase |
| PIC78_RS18810 (3897149) | 3897149..3897478 | + | 330 | WP_000042910.1 | IS66 family transposase ISEc49 | Transposase |
| PIC78_RS18815 (3897465) | 3897465..3897857 | + | 393 | WP_000950652.1 | IS66 family transposase ISEc49 | Transposase |
| PIC78_RS18820 (3897864) | 3897864..3898738 | + | 875 | Protein_3671 | IS66 family transposase ISEc49 | Transposase |
| PIC78_RS18825 (3898734) | 3898734..3899543 | - | 810 | Protein_3672 | hypothetical protein | VF |
| PIC78_RS18830 (3899507) | 3899507..3901186 | - | 1680 | Protein_3673 | hypothetical protein | VF |
| PIC78_RS18835 (3901179) | 3901179..3901349 | - | 171 | Protein_3674 | hypothetical protein | - |
| PIC78_RS18840 (3901438) | 3901438..3901938 | - | 501 | WP_001167446.1 | hypothetical protein | - |
| PIC78_RS18845 (3901938) | 3901938..3902177 | - | 240 | WP_000335228.1 | hypothetical protein | - |
| PIC78_RS18850 (3902206) | 3902206..3902436 | - | 231 | WP_001389194.1 | AlpA family transcriptional regulator | - |
| PIC78_RS18855 (3902505) | 3902505..3903065 | - | 561 | WP_000991581.1 | hypothetical protein | - |
| PIC78_RS18860 (3903323) | 3903323..3903889 | - | 567 | WP_001126801.1 | inovirus-type Gp2 protein | - |
| PIC78_RS18865 (3905465) | 3905465..3906169 | + | 705 | WP_001389195.1 | toll/interleukin-1 receptor domain-containing protein | - |
| PIC78_RS18870 (3906593) | 3906593..3907324 | - | 732 | WP_001075482.1 | inovirus Gp2 family protein | - |
| PIC78_RS18875 (3908843) | 3908843..3909973 | - | 1131 | WP_000147745.1 | hypothetical protein | - |
| PIC78_RS18880 (3910158) | 3910158..3911042 | + | 885 | WP_271287751.1 | 50S ribosome-binding GTPase | - |
| PIC78_RS18885 (3911245) | 3911245..3911925 | + | 681 | WP_001278649.1 | WYL domain-containing protein | - |
| PIC78_RS18890 (3912076) | 3912076..3912753 | + | 678 | WP_001097565.1 | hypothetical protein | - |
| PIC78_RS18895 (3912759) | 3912759..3912992 | + | 234 | WP_000883181.1 | DUF905 family protein | - |
| PIC78_RS18900 (3913082) | 3913082..3913900 | + | 819 | WP_001175155.1 | DUF932 domain-containing protein | - |
| PIC78_RS18905 (3914166) | 3914166..3914645 | + | 480 | WP_000706978.1 | antirestriction protein | - |
| PIC78_RS18910 (3914660) | 3914660..3915136 | + | 477 | WP_001186193.1 | RadC family protein | - |
| PIC78_RS18915 (3915223) | 3915223..3915444 | + | 222 | WP_000692347.1 | DUF987 domain-containing protein | - |
| PIC78_RS18920 (3915524) | 3915524..3915892 | + | 369 | WP_001285610.1 | type IV toxin-antitoxin system YeeU family antitoxin | Antitoxin Detail |
| PIC78_RS18925 (3915981) | 3915981..3916358 | + | 378 | WP_000854820.1 | type IV toxin-antitoxin system cytoskeleton-binding toxin CbtA | Toxin Detail |
| PIC78_RS18930 (3916355) | 3916355..3916552 | + | 198 | Protein_3693 | DUF5983 family protein | - |
| PIC78_RS18935 (3916580) | 3916580..3916777 | + | 198 | WP_085949158.1 | DUF957 domain-containing protein | - |
| PIC78_RS18940 (3916862) | 3916862..3917422 | + | 561 | Protein_3695 | DUF4942 domain-containing protein | - |
| PIC78_RS18945 (3917789) | 3917789..3918325 | - | 537 | WP_000942785.1 | Type II secretion system protein M | VF |
| PIC78_RS18950 (3918327) | 3918327..3919505 | - | 1179 | WP_000094991.1 | hypothetical protein | VF |
| PIC78_RS18955 (3919502) | 3919502..3920479 | - | 978 | WP_000633209.1 | Putative type II secretion system protein K | VF |
| PIC78_RS18960 (3920482) | 3920482..3921081 | - | 600 | WP_001255034.1 | Type II secretion system protein J | VF |
| PIC78_RS18965 (3921078) | 3921078..3921449 | - | 372 | WP_000820113.1 | hypothetical protein | VF |
| PIC78_RS18970 (3921446) | 3921446..3922009 | - | 564 | WP_001115154.1 | Type II secretion system protein H | VF |
| PIC78_RS18975 (3922013) | 3922013..3922468 | - | 456 | WP_001087289.1 | Type II secretion system protein G | VF |
| PIC78_RS18980 (3922485) | 3922485..3923708 | - | 1224 | WP_001173458.1 | Type II secretion system protein F | VF |
| PIC78_RS18985 (3923708) | 3923708..3925201 | - | 1494 | Protein_3704 | Type II secretion system protein E | VF |
| PIC78_RS18990 (3925201) | 3925201..3927261 | - | 2061 | WP_000498829.1 | Secretin GspD 2 | VF |
| PIC78_RS18995 (3927291) | 3927291..3928250 | - | 960 | WP_000135076.1 | Type II secretion system protein C 2 | VF |
| PIC78_RS19000 (3928268) | 3928268..3928678 | - | 411 | WP_001324279.1 | type II secretion system pilot lipoprotein GspS-beta | - |
| PIC78_RS19005 (3928744) | 3928744..3929553 | - | 810 | WP_001333829.1 | Prepilin peptidase PppA | VF |
| PIC78_RS19010 (3929751) | 3929751..3934313 | - | 4563 | WP_001034462.1 | hypothetical protein | VF |
| PIC78_RS19015 (3934798) | 3934798..3936480 | - | 1683 | WP_000259288.1 | glycolate permease GlcA | - |
| PIC78_RS19020 (3936835) | 3936835..3939006 | - | 2172 | WP_000084131.1 | malate synthase G | - |
| PIC78_RS19025 (3939028) | 3939028..3939432 | - | 405 | WP_000853256.1 | GlcG family protein | - |
| PIC78_RS19030 (3939437) | 3939437..3940660 | - | 1224 | WP_001194662.1 | glycolate oxidase subunit GlcF | - |
| PIC78_RS19035 (3940671) | 3940671..3941723 | - | 1053 | WP_000943101.1 | glycolate oxidase subunit GlcE | - |
| PIC78_RS19040 (3941723) | 3941723..3943222 | - | 1500 | WP_000026117.1 | glycolate oxidase subunit GlcD | - |
| PIC78_RS19045 (3943473) | 3943473..3944237 | + | 765 | WP_001297764.1 | transcriptional regulator GlcC | - |
| PIC78_RS19050 (3944244) | 3944244..3945376 | - | 1133 | Protein_3717 | protein YghO | - |
| PIC78_RS19055 (3945786) | 3945786..3947474 | + | 1689 | WP_001326490.1 | Long-chain-fatty-acid--AMP ligase FadD26 | VF |
| PIC78_RS19060 (3947471) | 3947471..3948385 | + | 915 | WP_001077166.1 | NAD-dependent epimerase/dehydratase family protein | - |
| PIC78_RS19065 (3948417) | 3948417..3948665 | + | 249 | WP_000248097.1 | acyl carrier protein | - |
| PIC78_RS19070 (3948665) | 3948665..3949837 | + | 1173 | WP_000524970.1 | 8-amino-7-oxononanoate synthase | VF |
| PIC78_RS19075 (3949872) | 3949872..3950951 | - | 1080 | WP_001318997.1 | LPS export ABC transporter permease LptG | - |
| PIC78_RS19080 (3950948) | 3950948..3952018 | - | 1071 | WP_000779636.1 | LPS export ABC transporter permease LptF | - |
| PIC78_RS19085 (3952049) | 3952049..3952609 | - | 561 | WP_001298770.1 | YtfJ family protein | - |
| PIC78_RS19090 (3952621) | 3952621..3953445 | - | 825 | WP_000984978.1 | hypothetical protein | - |
| PIC78_RS19095 (3953445) | 3953445..3954794 | - | 1350 | WP_000896896.1 | lipopolysaccharide biosynthesis protein | - |
| PIC78_RS19100 (3954840) | 3954840..3955598 | - | 759 | WP_000339531.1 | ATP-binding protein | - |
| PIC78_RS19105 (3955630) | 3955630..3956343 | - | 714 | WP_001076243.1 | dTMP kinase | - |
| PIC78_RS19110 (3956517) | 3956517..3957209 | + | 693 | WP_001190781.1 | dTMP kinase | - |
| PIC78_RS19115 (3957258) | 3957258..3958757 | - | 1500 | WP_000933250.1 | inorganic phosphate transporter PitB | - |
| PIC78_RS19120 (3959046) | 3959046..3959743 | + | 698 | WP_095033700.1 | IS1 family transposase IS1R | Transposase |
| PIC78_RS19125 (3959825) | 3959825..3961684 | - | 1860 | WP_001297309.1 | bifunctional glutathionylspermidine amidase/synthase | - |
| PIC78_RS19130 (3961889) | 3961889..3962755 | + | 867 | WP_001295515.1 | glutathione-dependent disulfide-bond oxidoreductase | - |
| PIC78_RS19135 (3962784) | 3962784..3962865 | - | 82 | Protein_3734 | hypothetical protein | - |
| PIC78_RS19140 (3962878) | 3962878..3963126 | - | 249 | WP_000334896.1 | hydrogenase maturation factor HybG | - |
| PIC78_RS19145 (3963139) | 3963139..3963480 | - | 342 | WP_000544953.1 | hydrogenase maturation nickel metallochaperone HypA | - |
| PIC78_RS19150 (3963473) | 3963473..3963961 | - | 489 | WP_000134014.1 | hydrogenase-2 assembly chaperone | - |
| PIC78_RS19155 (3963954) | 3963954..3964448 | - | 495 | WP_001221939.1 | HyaD/HybD family hydrogenase maturation endopeptidase | - |
| PIC78_RS19160 (3964448) | 3964448..3966151 | - | 1704 | WP_000083065.1 | hydrogenase 2 large subunit | - |
| PIC78_RS19165 (3966148) | 3966148..3967326 | - | 1179 | WP_000017703.1 | Ni/Fe-hydrogenase cytochrome b subunit | - |
| PIC78_RS19170 (3967316) | 3967316..3968302 | - | 987 | WP_001081870.1 | hydrogenase 2 operon protein HybA | - |
| PIC78_RS19175 (3968305) | 3968305..3969423 | - | 1119 | WP_000145410.1 | hydrogenase 2 small subunit | - |
| PIC78_RS19180 (3969612) | 3969612..3969899 | - | 288 | WP_001059136.1 | DUF2623 family protein YghW | - |
| PIC78_RS19185 (3970018) | 3970018..3970902 | - | 885 | Protein_3744 | YghX family hydrolase | - |
| PIC78_RS19190 (3971059) | 3971059..3972099 | + | 1041 | WP_000262172.1 | L-glyceraldehyde 3-phosphate reductase | - |
| PIC78_RS19195 (3972139) | 3972139..3972633 | - | 495 | WP_001333828.1 | TIGR00645 family protein | - |
| PIC78_RS19200 (3972824) | 3972824..3973708 | + | 885 | WP_000018760.1 | putative oxidoreductase YghA | VF |
| PIC78_RS19205 (3973980) | 3973980..3974405 | - | 426 | WP_001240712.1 | TonB system transport protein ExbD | - |
| PIC78_RS19210 (3974412) | 3974412..3975146 | - | 735 | WP_000527844.1 | tol-pal system-associated acyl-CoA thioesterase | - |
| PIC78_RS19215 (3975398) | 3975398..3976585 | + | 1188 | WP_001375244.1 | cystathionine beta-lyase | - |
| PIC78_RS19220 (3976725) | 3976725..3977384 | + | 660 | WP_000268419.1 | DedA family general envelope maintenance protein YghB | - |
| PIC78_RS19225 (3977424) | 3977424..3978323 | - | 900 | WP_001298382.1 | DNA-binding transcriptional regulator YqhC | - |
| PIC78_RS19230 (3978517) | 3978517..3979680 | + | 1164 | WP_001058802.1 | alcohol dehydrogenase | - |
| PIC78_RS19235 (3979785) | 3979785..3980612 | + | 828 | WP_000013149.1 | 2,5-didehydrogluconate reductase DkgA | - |
| PIC78_RS19240 (3980812) | 3980812..3981738 | + | 927 | WP_000691619.1 | YbjP/YqhG family protein | - |
| PIC78_RS19245 (3981789) | 3981789..3982046 | + | 258 | WP_000848528.1 | lipoprotein YqhH | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|