MGE detailed information
MGE type: Conjugative plasmid MGE length: 82920 bp
Accession: NZ_CP116036 Location: 1..82920 Organism: Escherichia coli strain FAH Replicon: plasmid unnamed1
Accession: NZ_CP116036 Location: 1..82920 Organism: Escherichia coli strain FAH Replicon: plasmid unnamed1
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| PGH49_RS24960 (1) | 1..663 | + | 663 | WP_012783935.1 | plasmid IncI1-type surface exclusion protein ExcA | - |
| PGH49_RS24965 (735) | 735..944 | - | 210 | WP_000062602.1 | HEAT repeat domain-containing protein | - |
| PGH49_RS24970 (1276) | 1276..1452 | + | 177 | WP_001054900.1 | hypothetical protein | - |
| PGH49_RS24975 (1517) | 1517..1612 | - | 96 | WP_000609148.1 | DinQ-like type I toxin DqlB | - |
| PGH49_RS24980 (2113) | 2113..2364 | + | 252 | WP_001291964.1 | hypothetical protein | - |
| PGH49_RS24985 (2436) | 2436..2588 | - | 153 | WP_001331364.1 | Hok/Gef family protein | Toxin Detail |
| - (2638) | 2638..2700 | + | 63 | NuclAT_0 | - | Antitoxin Detail |
| - (2638) | 2638..2700 | + | 63 | NuclAT_0 | - | Antitoxin Detail |
| - (2638) | 2638..2700 | + | 63 | NuclAT_0 | - | Antitoxin Detail |
| - (2638) | 2638..2700 | + | 63 | NuclAT_0 | - | Antitoxin Detail |
| - (2941) | 2941..2996 | + | 56 | NuclAT_1 | - | - |
| - (2941) | 2941..2996 | + | 56 | NuclAT_1 | - | - |
| - (2941) | 2941..2996 | + | 56 | NuclAT_1 | - | - |
| - (2941) | 2941..2996 | + | 56 | NuclAT_1 | - | - |
| PGH49_RS24990 (3190) | 3190..4143 | + | 954 | WP_021513958.1 | hypothetical protein | - |
| PGH49_RS24995 (4361) | 4361..5569 | + | 1209 | WP_001383960.1 | IncI1-type conjugal transfer protein TrbA | - |
| PGH49_RS25000 (5588) | 5588..6658 | + | 1071 | WP_000151583.1 | IncI1-type conjugal transfer protein TrbB | - |
| PGH49_RS25005 (6651) | 6651..8942 | + | 2292 | WP_072291269.1 | F-type conjugative transfer protein TrbC | - |
| PGH49_RS25010 (8979) | 8979..11675 | - | 2697 | WP_069192527.1 | hypothetical protein | Relaxase |
| PGH49_RS25015 (11686) | 11686..12018 | - | 333 | WP_001283947.1 | IncI1-type relaxosome accessory protein NikA | - |
| PGH49_RS25020 (12252) | 12252..12587 | + | 336 | WP_000157090.1 | hypothetical protein | - |
| PGH49_RS25025 (12673) | 12673..13521 | - | 849 | WP_013307867.1 | DUF4942 domain-containing protein | - |
| PGH49_RS25030 (14101) | 14101..14352 | + | 252 | WP_000148286.1 | helix-turn-helix transcriptional regulator | - |
| PGH49_RS25035 (14383) | 14383..14628 | - | 246 | WP_001260882.1 | hypothetical protein | - |
| PGH49_RS25040 (14628) | 14628..15518 | - | 891 | WP_000038343.1 | ISNCY family transposase ISSen7 | VF |
| PGH49_RS25045 (15515) | 15515..15904 | - | 390 | WP_000833767.1 | hypothetical protein | - |
| PGH49_RS25050 (16081) | 16081..16347 | - | 267 | WP_001247860.1 | hypothetical protein | - |
| PGH49_RS25055 (16440) | 16440..16874 | - | 435 | WP_000218862.1 | hypothetical protein | - |
| PGH49_RS25060 (17607) | 17607..18107 | - | 501 | WP_000117622.1 | antirestriction protein ArdA | - |
| PGH49_RS25065 (18569) | 18569..19165 | - | 597 | WP_001401763.1 | hypothetical protein | - |
| PGH49_RS25070 (19162) | 19162..19881 | - | 720 | WP_001276268.1 | plasmid SOS inhibition protein A | - |
| PGH49_RS25075 (19878) | 19878..20312 | - | 435 | WP_001578018.1 | conjugation system SOS inhibitor PsiB | - |
| PGH49_RS25080 (20367) | 20367..22325 | - | 1959 | WP_271293221.1 | ParB/RepB/Spo0J family partition protein | - |
| PGH49_RS25085 (22384) | 22384..22617 | - | 234 | WP_271293222.1 | DUF905 domain-containing protein | - |
| PGH49_RS25090 (22675) | 22675..23202 | - | 528 | WP_001276104.1 | single-stranded DNA-binding protein | - |
| PGH49_RS25095 (23586) | 23586..23900 | - | 315 | WP_001434357.1 | hypothetical protein | - |
| PGH49_RS25100 (23971) | 23971..24162 | - | 192 | WP_072105515.1 | hypothetical protein | - |
| PGH49_RS25105 (24159) | 24159..24581 | - | 423 | WP_000271732.1 | DUF1380 family protein | - |
| PGH49_RS25110 (24628) | 24628..25053 | - | 426 | WP_001198882.1 | antirestriction protein | - |
| PGH49_RS25115 (25466) | 25466..26236 | - | 771 | WP_175120365.1 | hypothetical protein | - |
| PGH49_RS25120 (26281) | 26281..26799 | - | 519 | WP_231530587.1 | DUF1380 family protein | - |
| PGH49_RS25125 (26729) | 26729..26950 | - | 222 | WP_001104873.1 | hypothetical protein | - |
| PGH49_RS25130 (26951) | 26951..27634 | - | 684 | WP_137467167.1 | DNA methylase | - |
| PGH49_RS25135 (27710) | 27710..28021 | - | 312 | WP_033863049.1 | hypothetical protein | - |
| PGH49_RS25140 (28025) | 28025..28447 | - | 423 | WP_000774832.1 | plasmid partitioning/stability family protein | - |
| PGH49_RS25145 (28450) | 28450..29430 | - | 981 | WP_012783921.1 | plasmid segregation protein ParM | - |
| PGH49_RS25150 (29768) | 29768..30103 | + | 336 | WP_271293223.1 | hypothetical protein | - |
| PGH49_RS25155 (30108) | 30108..30194 | - | 87 | Protein_39 | hypothetical protein | - |
| PGH49_RS25160 (30198) | 30198..31100 | - | 903 | WP_001739825.1 | DUF1281 domain-containing protein | - |
| PGH49_RS25165 (31518) | 31518..31766 | + | 249 | WP_000618110.1 | DinI-like family protein | - |
| PGH49_RS25170 (31763) | 31763..32200 | + | 438 | WP_000109071.1 | translesion error-prone DNA polymerase V autoproteolytic subunit | - |
| PGH49_RS25175 (32200) | 32200..33471 | + | 1272 | WP_001703910.1 | Y-family DNA polymerase | - |
| PGH49_RS25180 (33659) | 33659..34285 | + | 627 | WP_000587689.1 | ParA family plasmid-partitioning AAA ATPase | - |
| PGH49_RS25185 (34282) | 34282..34584 | + | 303 | WP_001245884.1 | hypothetical protein | - |
| PGH49_RS25190 (35083) | 35083..36429 | - | 1347 | WP_063118133.1 | protein YagA | - |
| PGH49_RS25195 (36782) | 36782..37384 | + | 603 | WP_000517687.1 | ProQ/FINO family protein | - |
| PGH49_RS25200 (37440) | 37440..37949 | + | 510 | WP_032291091.1 | hypothetical protein | - |
| PGH49_RS25205 (38265) | 38265..39113 | - | 849 | WP_032291092.1 | 3'-5' exonuclease | - |
| PGH49_RS25210 (39153) | 39153..39431 | - | 279 | WP_001384452.1 | type II toxin-antitoxin system toxin YacB | Toxin Detail |
| PGH49_RS25215 (39431) | 39431..39700 | - | 270 | WP_032291093.1 | type II toxin-antitoxin system antitoxin YacA | - |
| PGH49_RS25220 (39755) | 39755..39913 | - | 159 | WP_038349023.1 | hypothetical protein | - |
| PGH49_RS25225 (40611) | 40611..41642 | - | 1032 | WP_000907863.1 | plasmid replication initiator RepA | - |
| PGH49_RS25230 (42600) | 42600..42878 | + | 279 | WP_219065241.1 | ash family protein | - |
| PGH49_RS25235 (42796) | 42796..43083 | + | 288 | WP_000074849.1 | conjugal transfer protein TraA | - |
| PGH49_RS25240 (43525) | 43525..44058 | + | 534 | WP_001306770.1 | transcription termination/antitermination NusG family protein | - |
| PGH49_RS25245 (44311) | 44311..44994 | + | 684 | WP_000213859.1 | conjugal transfer protein TraC | - |
| PGH49_RS25250 (45167) | 45167..45718 | + | 552 | WP_000744644.1 | hypothetical protein | - |
| PGH49_RS25255 (45883) | 45883..46137 | + | 255 | WP_053921312.1 | PilI type IV pilus biogenesis protein | - |
| PGH49_RS25260 (46180) | 46180..46632 | + | 453 | WP_182927282.1 | pili assembly chaperone | - |
| PGH49_RS25265 (47601) | 47601..48668 | + | 1068 | WP_001360287.1 | hypothetical protein | VF |
| PGH49_RS25270 (48668) | 48668..49105 | + | 438 | WP_000539807.1 | hypothetical protein | VF |
| PGH49_RS25275 (49119) | 49119..50801 | + | 1683 | WP_000748143.1 | hypothetical protein | VF |
| PGH49_RS25280 (50794) | 50794..52089 | + | 1296 | WP_000752780.1 | type 4b pilus protein PilO2 | - |
| PGH49_RS25285 (52076) | 52076..52528 | + | 453 | WP_182927280.1 | hypothetical protein | VF |
| PGH49_RS25290 (52539) | 52539..54092 | + | 1554 | WP_000362206.1 | hypothetical protein | VF |
| PGH49_RS25295 (54105) | 54105..55190 | + | 1086 | WP_001208802.1 | hypothetical protein | VF |
| PGH49_RS25300 (55207) | 55207..55821 | + | 615 | WP_049011474.1 | hypothetical protein | VF |
| PGH49_RS25305 (55831) | 55831..56391 | + | 561 | WP_000014005.1 | hypothetical protein | VF |
| PGH49_RS25310 (56376) | 56376..57032 | + | 657 | WP_001401940.1 | hypothetical protein | VF |
| PGH49_RS25315 (57032) | 57032..58324 | + | 1293 | WP_049011475.1 | hypothetical protein | VF |
| PGH49_RS25320 (58381) | 58381..58506 | - | 126 | Protein_72 | transposase | - |
| PGH49_RS25325 (58714) | 58714..59538 | + | 825 | WP_001238942.1 | conjugal transfer protein TraE | - |
| PGH49_RS25330 (59624) | 59624..60826 | + | 1203 | WP_000976353.1 | conjugal transfer protein TraF | - |
| PGH49_RS25335 (60886) | 60886..61470 | + | 585 | WP_182927276.1 | lipopolysaccharide core heptose(II)-phosphate phosphatase | - |
| PGH49_RS25340 (61865) | 61865..62323 | + | 459 | WP_001079805.1 | hypothetical protein | VF |
| PGH49_RS25345 (62320) | 62320..63138 | + | 819 | WP_001611721.1 | hypothetical protein | VF |
| PGH49_RS25350 (63135) | 63135..64283 | + | 1149 | WP_001024974.1 | putative protein YggR | VF |
| PGH49_RS25355 (64280) | 64280..64570 | + | 291 | WP_001299214.1 | hypothetical protein | - |
| PGH49_RS25360 (64585) | 64585..65136 | + | 552 | WP_000014584.1 | Phospholipase D | VF |
| PGH49_RS25365 (65226) | 65226..68993 | + | 3768 | WP_049011477.1 | DUF5710 domain-containing protein | - |
| PGH49_RS25370 (69011) | 69011..69358 | + | 348 | WP_001055900.1 | conjugal transfer protein | - |
| PGH49_RS25375 (69355) | 69355..70047 | + | 693 | WP_000138552.1 | DotI/IcmL family type IV secretion protein | - |
| PGH49_RS25380 (70058) | 70058..71041 | + | 984 | WP_250243423.1 | hypothetical protein | VF |
| PGH49_RS25385 (71044) | 71044..72333 | + | 1290 | WP_001271994.1 | conjugal transfer protein TraO | - |
| PGH49_RS25390 (72333) | 72333..73037 | + | 705 | WP_250243421.1 | IncI1-type conjugal transfer protein TraP | - |
| PGH49_RS25395 (73037) | 73037..73564 | + | 528 | WP_001055569.1 | conjugal transfer protein TraQ | - |
| PGH49_RS25400 (73615) | 73615..74019 | + | 405 | WP_000086965.1 | IncI1-type conjugal transfer protein TraR | - |
| PGH49_RS25405 (74083) | 74083..74271 | + | 189 | WP_001277253.1 | putative conjugal transfer protein TraS | - |
| PGH49_RS25410 (74255) | 74255..75055 | + | 801 | WP_001164784.1 | IncI1-type conjugal transfer protein TraT | - |
| PGH49_RS25415 (75145) | 75145..78189 | + | 3045 | WP_001024789.1 | IncI1-type conjugal transfer protein TraU | - |
| PGH49_RS25420 (78189) | 78189..78803 | + | 615 | WP_000337395.1 | IncI1-type conjugal transfer protein TraV | - |
| PGH49_RS25425 (78770) | 78770..79972 | + | 1203 | WP_089438463.1 | IncI1-type conjugal transfer protein TraW | - |
| PGH49_RS25430 (80001) | 80001..80585 | + | 585 | WP_001037987.1 | IncI1-type conjugal transfer protein TraX | - |
| PGH49_RS25435 (80682) | 80682..82850 | + | 2169 | WP_023518847.1 | DotA/TraY family protein | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|